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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069450 ID=TCONS_00069450|Name=TCONS_00069450|organism=Clytia hemisphaerica|type=transcript|length=705bp
aattgataaaatatctcTGTTAATAACAGAAACGTAAAACAATTCAAATT
GAATCAGGGACCGGACAGGTTCTGTTTAGTCCCTATCTTTTTACTGATAA
TTATACAAAAGGATTGacattttgagtatttttctaattcaaaacatttc
atttattttaagCCCATTTTCGGATGAAAACTCATTTCAACTGAATTGGT
AGACGTTGTACGTGGACTAATGCCATCCACCAGTGTTGATGAAATACAAA
GTGCCGTATACATTAGTTTCAATTCAAAAGTAGACACCAAGAAGAAAAAA
GCAAGAATTGGAGACGAATTCAACTCGTTGATGGCAAGAAAGGGCAGAAA
AGATTATAAAGTGGCAAAACGAAAACTGTCGTTAGGAAAAATCAAATTCG
ATCAAAAGACAAAGGCAACTTGGAGCAAACTAATTACCTCTGACATGGTC
TCTTCAGAAGATGAAGAAATCCAAGATAACGAGAAGACATTTGTCACCCG
CCCAAAACCAAATCGTCCTGCAAAAGtatcaaagttttttcaaaaattgg
acgAGGTGGACAGACAAACAATGGCTACAACATCGAGGTTTCGAGCTAAC
AAAAGGATGAAAGGAAATGTAAGTGAAAATGAGATCTCATTTTCAAAAGA
ACATAAAGAAGCAATGGCTTCATTGGAAATAACTTATGATTAATTTTTAT
GTgac Run BLAST on NCBI protein sequence of TCONS_00069450-protein >TCONS_00069450-protein ID=TCONS_00069450-protein|Name=TCONS_00069450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MPSTSVDEIQSAVYISFNSKVDTKKKKARIGDEFNSLMARKGRKDYKVAK
RKLSLGKIKFDQKTKATWSKLITSDMVSSEDEEIQDNEKTFVTRPKPNRP
AKVSKFFQKLDEVDRQTMATTSRFRANKRMKGNVSENEISFSKEHKEAMA
SLEITYD Run BLAST on NCBI transcript from alignment at scaffold_50:38348..39487+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069450 ID=TCONS_00069450|Name=TCONS_00069450|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at scaffold_50:38348..39487+ (Clytia hemisphaerica)
aattgataaaatatctcTGTTAATAACAGAAACGTAAAACAATTCAAATT
GAATCAGGGACCGGACAGGTTCTGTTTAGTCCCTATCTTTTTACTGATAA
TTATACAAAAGGATTGacattttgagtatttttctaattcaaaacatttc
atttattttaagCCCATTTTCGGATGAAAACTCATTTCAACTGAATTGGT
AGACGTTGTACGTGGACTAATGCCATCCACCAGTGTTGATGAAATACAAA
GTAAGTATCTAGAAACTTTTGCTGAAATTCAGCCTAAATGTTAGACAAAG
GTGTATATTATTGTTGCATTTCTATTGGACTCTTGTTTAAAGTAACTATT
TGTATGGCTTTGGTTTTTCTGTTTGTCTTTTCTTCTACCTTCAGCTGTAC
TTTCTGATTGTTTTGTGTGTCTAtcataaaattcaataaatattATTCTC
AGGTGCCGTATACATTAGTTTCAATTCAAAAGTAGACACCAAGAAGAAAA
AAGCAAGAATTGGAGACGAATTCAACTCGTTGATGGCAAGAAAGGGCAGA
AAAGATTATGTAAGTTCTTGGGGCTTATAACATTTTAATACATGAAAAGA
TGgctcaaaaaaacttattttgaattcttccatcttttattttatttttt
cgagGACTTTATTAGTGAAGCTTTTTTGTATAATATCTTTTTACCTCCCT
TTTTTATTGCTCCAGTTGCATTCCTATGCAAACAATTGTTTTTTTCAATT
GCTATTTACTAATACCTTAATatctttcttttatttcaacAGAAAGTGGC
AAAACGAAAACTGTCGTTAGGAAAAATCAAATTCGATCAAAAGACAAAGG
CAACTTGGAGCAAACTAATTACCTCTGACATGGTCTCTTCAGAAGATGAA
GAAATCCAAGATAACGAGAAGACATTTGTCACCCGCCCAAAACCAAATCG
TCCTGCAAAAGtatcaaagttttttcaaaaattggacgAGGTGGACAGAC
AAACAATGGCTACAACATCGAGGTTTCGAGCTAACAAAAGGATGAAAGGA
AATGTAAGTGAAAATGAGATCTCATTTTCAAAAGAACATAAAGAAGCAAT
GGCTTCATTGGAAATAACTTATGATTAATTTTTATGTgac Coding sequence (CDS) from alignment at scaffold_50:38348..39487+ >TCONS_00069450 ID=TCONS_00069450|Name=TCONS_00069450|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_50:38348..39487+ (Clytia hemisphaerica)
ATGCCATCCACCAGTGTTGATGAAATACAAAGTGCCGTATACATTAGTTT
CAATTCAAAAGTAGACACCAAGAAGAAAAAAGCAAGAATTGGAGACGAAT
TCAACTCGTTGATGGCAAGAAAGGGCAGAAAAGATTATAAAGTGGCAAAA
CGAAAACTGTCGTTAGGAAAAATCAAATTCGATCAAAAGACAAAGGCAAC
TTGGAGCAAACTAATTACCTCTGACATGGTCTCTTCAGAAGATGAAGAAA
TCCAAGATAACGAGAAGACATTTGTCACCCGCCCAAAACCAAATCGTCCT
GCAAAAGtatcaaagttttttcaaaaattggacgAGGTGGACAGACAAAC
AATGGCTACAACATCGAGGTTTCGAGCTAACAAAAGGATGAAAGGAAATG
TAAGTGAAAATGAGATCTCATTTTCAAAAGAACATAAAGAAGCAATGGCT
TCATTGGAAATAACTTATGATTAAATGCCATCCACCAGTGTTGATGAAAT
ACAAAGTGCCGTATACATTAGTTTCAATTCAAAAGTAGACACCAAGAAGA
AAAAAGCAAGAATTGGAGACGAATTCAACTCGTTGATGGCAAGAAAGGGC
AGAAAAGATTATAAAGTGGCAAAACGAAAACTGTCGTTAGGAAAAATCAA
ATTCGATCAAAAGACAAAGGCAACTTGGAGCAAACTAATTACCTCTGACA
TGGTCTCTTCAGAAGATGAAGAAATCCAAGATAACGAGAAGACATTTGTC
ACCCGCCCAAAACCAAATCGTCCTGCAAAAGtatcaaagttttttcaaaa
attggacgAGGTGGACAGACAAACAATGGCTACAACATCGAGGTTTCGAG
CTAACAAAAGGATGAAAGGAAATGTAAGTGAAAATGAGATCTCATTTTCA
AAAGAACATAAAGAAGCAATGGCTTCATTGGAAATAACTTATGATTAAAT
GCCATCCACCAGTGTTGATGAAATACAAAGTGCCGTATACATTAGTTTCA
ATTCAAAAGTAGACACCAAGAAGAAAAAAGCAAGAATTGGAGACGAATTC
AACTCGTTGATGGCAAGAAAGGGCAGAAAAGATTATAAAGTGGCAAAACG
AAAACTGTCGTTAGGAAAAATCAAATTCGATCAAAAGACAAAGGCAACTT
GGAGCAAACTAATTACCTCTGACATGGTCTCTTCAGAAGATGAAGAAATC
CAAGATAACGAGAAGACATTTGTCACCCGCCCAAAACCAAATCGTCCTGC
AAAAGtatcaaagttttttcaaaaattggacgAGGTGGACAGACAAACAA
TGGCTACAACATCGAGGTTTCGAGCTAACAAAAGGATGAAAGGAAATGTA
AGTGAAAATGAGATCTCATTTTCAAAAGAACATAAAGAAGCAATGGCTTC
ATTGGAAATAACTTATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069450-exon-scaffold_50-1491911889:38348..38597 | TCONS_00069450-exon-scaffold_50-1491911889:38348..38597 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1510915933:38348..38597 | TCONS_00069450-exon-scaffold_50-1510915933:38348..38597 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1575043694:38348..38597 | TCONS_00069450-exon-scaffold_50-1575043694:38348..38597 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1491911889:38800..38906 | TCONS_00069450-exon-scaffold_50-1491911889:38800..38906 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1510915933:38800..38906 | TCONS_00069450-exon-scaffold_50-1510915933:38800..38906 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1575043694:38800..38906 | TCONS_00069450-exon-scaffold_50-1575043694:38800..38906 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1491911889:39140..39487 | TCONS_00069450-exon-scaffold_50-1491911889:39140..39487 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1510915933:39140..39487 | TCONS_00069450-exon-scaffold_50-1510915933:39140..39487 | Clytia hemisphaerica | exon |
| TCONS_00069450-exon-scaffold_50-1575043694:39140..39487 | TCONS_00069450-exon-scaffold_50-1575043694:39140..39487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:38348..39487 + |
Blast
The following BLAST results are available for this feature:
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