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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069441 ID=TCONS_00069441|Name=TCONS_00069441|organism=Clytia hemisphaerica|type=transcript|length=1177bp
GAAAAGTTTTCAGCGTTTTATTCACGGTTGAGATTTTATTATAAAATTGG
TACTTTATTATTGTGTCATTATCCAAAAATCTGTAAATTTCGATAAATTT
CGATTGTAAACCAACCAACACAATTGTGTACCAATCACTATTTTGGTCAG
AGAATATAGATTTAGCCACCGAATTAAACTGATTCATTACGAAGGTGGTT
TCTCCATTTTCTCTTTCAACCTACTCTTCAAGTCATCCATACGACTTTCC
AATAAATGCATATTATTTTGGTATGAAGCTGATGTTTCTGTATTCAAACC
TTCAGTAGAGATCGCATTCTCGTTCATGTTCGAAAACCTATTCGTTTGTT
TTCTCATTGAGAAATATTCGGGAGATAACGTTTCAAGGTACAACACTTTG
TTTTCAAGCTCACGTAAAGTTCCATACACATCAGTGGTAGGGTCTATACG
TCCTGTTGGCTTGACAACCGTATGTAGATTCTTAATTCGTTCTTTGATGT
CACGTGGTGCGTTTGAGTAGGTTAGGGCGTTTGAAGGGTGGATGGGCGGC
CAACTTTTTAAGCGATCCGTCTTAAGAGgtgattttaatttcttttgagG
ATTGTTGTACACGCGTTCAATCCGAAGAAGACTTTTGGTCGAACGGCGGT
GCACGCGAACTGAGTCCGTCCGCGCACACGAAAATTGTTCATCTTCTTCA
TGTAGTTTGCAGAATTCTCTACGATTGAAGGCGTCTGCTTGAGTGCGCTT
ACGTTTAATGAAAGCGTTTATACGTCGATTAAACTCCTCGCTACTACATG
TGATCTGCACATATTTATTATCTGTCAATTGCGTTTCGAGATCTGTCTGA
ACGCCCATGTCGGATGTCGGGCGGATATTATCCATCCAATGTCTCATTtg
ctttggaaaattttgagttgCCTCTAGAATATGACGTAATTCTTCTAACA
TAACCCAAACGAGGTTGACTATTTCTTGTTCTGATAAATTACTTTTGTGA
CCGGCATCCATATTGAATTGTGGGTATAAGAGGTTGGATAGAGGTGCATA
ATTATGATCATTGGTCATTCCGTGTAACTTGCACATAAATTTTTGTATTG
GGTTCGTGATCTCGTCAAGAAattccattttttaaattttcagaattatt
atttgcttttctatttttttaagaTCT Run BLAST on NCBI protein sequence of TCONS_00069441-protein >TCONS_00069441-protein ID=TCONS_00069441-protein|Name=TCONS_00069441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MEFLDEITNPIQKFMCKLHGMTNDHNYAPLSNLLYPQFNMDAGHKSNLSE
QEIVNLVWVMLEELRHILEATQNFPKQMRHWMDNIRPTSDMGVQTDLETQ
LTDNKYVQITCSSEEFNRRINAFIKRKRTQADAFNRREFCKLHEEDEQFS
CARTDSVRVHRRSTKSLLRIERVYNNPQKKLKSPLKTDRLKSWPPIHPSN
ALTYSNAPRDIKERIKNLHTVVKPTGRIDPTTDVYGTLRELENKVLYLET
LSPEYFSMRKQTNRFSNMNENAISTEGLNTETSASYQNNMHLLESRMDDL
KSRLKEKMEKPPS Run BLAST on NCBI transcript from alignment at scaffold_5:122313..123489 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069441 ID=TCONS_00069441|Name=TCONS_00069441|organism=Clytia hemisphaerica|type=transcript|length=1177bp|location=Sequence derived from alignment at scaffold_5:122313..123489 (Clytia hemisphaerica)
AGAtcttaaaaaaatagaaaagcaaataataattctgaaaatttaaaaaa
tggaatTTCTTGACGAGATCACGAACCCAATACAAAAATTTATGTGCAAG
TTACACGGAATGACCAATGATCATAATTATGCACCTCTATCCAACCTCTT
ATACCCACAATTCAATATGGATGCCGGTCACAAAAGTAATTTATCAGAAC
AAGAAATAGTCAACCTCGTTTGGGTTATGTTAGAAGAATTACGTCATATT
CTAGAGGcaactcaaaattttccaaagcaAATGAGACATTGGATGGATAA
TATCCGCCCGACATCCGACATGGGCGTTCAGACAGATCTCGAAACGCAAT
TGACAGATAATAAATATGTGCAGATCACATGTAGTAGCGAGGAGTTTAAT
CGACGTATAAACGCTTTCATTAAACGTAAGCGCACTCAAGCAGACGCCTT
CAATCGTAGAGAATTCTGCAAACTACATGAAGAAGATGAACAATTTTCGT
GTGCGCGGACGGACTCAGTTCGCGTGCACCGCCGTTCGACCAAAAGTCTT
CTTCGGATTGAACGCGTGTACAACAATCctcaaaagaaattaaaatcacC
TCTTAAGACGGATCGCTTAAAAAGTTGGCCGCCCATCCACCCTTCAAACG
CCCTAACCTACTCAAACGCACCACGTGACATCAAAGAACGAATTAAGAAT
CTACATACGGTTGTCAAGCCAACAGGACGTATAGACCCTACCACTGATGT
GTATGGAACTTTACGTGAGCTTGAAAACAAAGTGTTGTACCTTGAAACGT
TATCTCCCGAATATTTCTCAATGAGAAAACAAACGAATAGGTTTTCGAAC
ATGAACGAGAATGCGATCTCTACTGAAGGTTTGAATACAGAAACATCAGC
TTCATACCAAAATAATATGCATTTATTGGAAAGTCGTATGGATGACTTGA
AGAGTAGGTTGAAAGAGAAAATGGAGAAACCACCTTCGTAATGAATCAGT
TTAATTCGGTGGCTAAATCTATATTCTCTGACCAAAATAGTGATTGGTAC
ACAATTGTGTTGGTTGGTTTACAATCGAAATTTATCGAAATTTACAGATT
TTTGGATAATGACACAATAATAAAGTACCAATTTTATAATAAAATCTCAA
CCGTGAATAAAACGCTGAAAACTTTTC Coding sequence (CDS) from alignment at scaffold_5:122313..123489 >TCONS_00069441 ID=TCONS_00069441|Name=TCONS_00069441|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_5:122313..123489 (Clytia hemisphaerica)
atggaatTTCTTGACGAGATCACGAACCCAATACAAAAATTTATGTGCAA
GTTACACGGAATGACCAATGATCATAATTATGCACCTCTATCCAACCTCT
TATACCCACAATTCAATATGGATGCCGGTCACAAAAGTAATTTATCAGAA
CAAGAAATAGTCAACCTCGTTTGGGTTATGTTAGAAGAATTACGTCATAT
TCTAGAGGcaactcaaaattttccaaagcaAATGAGACATTGGATGGATA
ATATCCGCCCGACATCCGACATGGGCGTTCAGACAGATCTCGAAACGCAA
TTGACAGATAATAAATATGTGCAGATCACATGTAGTAGCGAGGAGTTTAA
TCGACGTATAAACGCTTTCATTAAACGTAAGCGCACTCAAGCAGACGCCT
TCAATCGTAGAGAATTCTGCAAACTACATGAAGAAGATGAACAATTTTCG
TGTGCGCGGACGGACTCAGTTCGCGTGCACCGCCGTTCGACCAAAAGTCT
TCTTCGGATTGAACGCGTGTACAACAATCctcaaaagaaattaaaatcac
CTCTTAAGACGGATCGCTTAAAAAGTTGGCCGCCCATCCACCCTTCAAAC
GCCCTAACCTACTCAAACGCACCACGTGACATCAAAGAACGAATTAAGAA
TCTACATACGGTTGTCAAGCCAACAGGACGTATAGACCCTACCACTGATG
TGTATGGAACTTTACGTGAGCTTGAAAACAAAGTGTTGTACCTTGAAACG
TTATCTCCCGAATATTTCTCAATGAGAAAACAAACGAATAGGTTTTCGAA
CATGAACGAGAATGCGATCTCTACTGAAGGTTTGAATACAGAAACATCAG
CTTCATACCAAAATAATATGCATTTATTGGAAAGTCGTATGGATGACTTG
AAGAGTAGGTTGAAAGAGAAAATGGAGAAACCACCTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069441-exon-scaffold_5-1491911889:122313..123489 | TCONS_00069441-exon-scaffold_5-1491911889:122313..123489 | Clytia hemisphaerica | exon |
| TCONS_00069441-exon-scaffold_5-1510915933:122313..123489 | TCONS_00069441-exon-scaffold_5-1510915933:122313..123489 | Clytia hemisphaerica | exon |
| TCONS_00069441-exon-scaffold_5-1575043694:122313..123489 | TCONS_00069441-exon-scaffold_5-1575043694:122313..123489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:122313..123489 . |
Blast
BLAST of TCONS_00069441 vs. Swiss-Prot (Human)
Match: MBIP1 (MAP3K12-binding inhibitory protein 1 OS=Homo sapiens GN=MBIP PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 8.466e-18 Identity = 52/157 (33.12%), Postives = 89/157 (56.69%), Query Frame = -2
Query: 361 DNKYVQITCSSEEFNRRINAFIKRKRTQADAFNRREFCKLHEEDEQFSCARTDSVRVHRRSTKSLLRIERVYN--NPQKKLKSPLKTDRLKSWPPIHPSNALTYSNAPRDIKERIKNLHTVVK-PTGRIDPTTDVYGTLRELENKVLYLETLSPEYF 822
D + VQI E +RRI+AFI+RK+ + + N REFC + + +++ SCARTD++ KS +++ RV N PQ + + + H N++ + ++ER++N+ ++ TG P D+Y +++LE+K+L LE +SPEYF
Sbjct: 146 DPEVVQIKAGKAEIDRRISAFIERKQAEINENNVREFCNVIDCNQENSCARTDAIFTPYPGFKSHVKVSRVVNTYGPQTRPEGIPGSG--------HKPNSMLRDCGNQAVEERLQNIEAHLRLQTGGPVP-RDIYQRIKKLEDKILELEGISPEYF 293
The following BLAST results are available for this feature:
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