TCONS_00069436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069436
Unique NameTCONS_00069436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069436 ID=TCONS_00069436|Name=TCONS_00069436|organism=Clytia hemisphaerica|type=transcript|length=515bp
ATTTACGAATACTAAAGTGCACAATGGAAAAGTAATCAATAGAATATTAT
TAATTTATCTTATTATACAAAATATCTTCGgtaataccgggtgcgccaaa
aaatcttttttgagacACCCGGTATAGTTGCAGAAAAACCACGAATGTCT
ATTTGATAGCTTATATTGAGCCTGGTTGCTGCTTTCTTCGTTATCCCTCA
CTTTTCAGACGTTCGTCCAACTCCTCAACGATCAATTGCATCTCAACAAT
CGACGTTGGTCTCAAGTTCAATAATTGCAATTTTTCTGCTTTGGTGAAAT
TGTACGGTGCTAAAGCGGTCATGAATTTCTGTACGGCTTCCGTGTCTTGA
TGCTTGGCAGGCGTCTTCTCAAGGTATTTGATGGTTTCGTAAGCTACGGT
TGCCACATTAGTGATCCGGTgttcaatcaatttttcatcttccaGGAGTT
GGAAGACTTCAGCGTTACTTAAAGTTGCCACATTCTCATTCACTACCTCC
ATTCTATATTATTGT
Run BLAST on NCBI

transcript from alignment at scaffold_5:121077..121830-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069436 ID=TCONS_00069436|Name=TCONS_00069436|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at scaffold_5:121077..121830- (Clytia hemisphaerica)
ATTTACGAATACTAAAGTGCACAATGGAAAAGTAATCAATAGAATATTAT
TAATTTATCTTATTATACAAAATATCTTCGGTAATACCGGGTGCGCCAAA
AAATCTTTTTTGAGACACCCGGTATAGTTGCAGAAAAACCACGAATGTCT
ATTTGATAGCTTATATTGAGCCTGGTTGCTGCTTTCTTCGTTATCCCTCA
CGTTTAGGAGAAGCCAATGTAAAATATTCCCAAGCAGATAAAGCAAGGAT
ATATCAATAAAATCGCAATGTAGAGGTAAACCATGACGATTAACAGAGCT
TCGTCTTCTTCATTAGATGCTTCTCAAGAAAACTGTAACTTTAAGGACGA
GGCTCGTCTCAAGTATCATTATTTATTCTTCTTGAGGTAAAGGTAACATT
TGTTGAATAATATTGATCAACTTCTCTAATTCTTCCTCAGTTTTCAGACG
TTCGTCCAACTCCTCAACGATCAATTGCATCTCAACAATCGACGTTGGTC
TCAAGTTCAATAATTGCAATTTTTCTGCTTTGGTGAAATTGTACGGTGCT
AAAGCGGTCATGAATTTCTGTACGGCTTCCGTGTCTTGATGCTTGGCAGG
CGTCTTCTCAAGGTATTTGATGGTTTCGTAAGCTACGGTTGCCACATTAG
TGATCCGGTGTTCAATCAATTTTTCATCTTCCAGGAGTTGGAAGACTTCA
GCGTTACTTAAAGTTGCCACATTCTCATTCACTACCTCCATTCTATATTA
TTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043271XLOC_043271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069436-exon-scaffold_5-1575043694:121630..121830TCONS_00069436-exon-scaffold_5-1575043694:121630..121830Clytia hemisphaericaexon
TCONS_00069436-exon-scaffold_5-1575043694:121077..121390TCONS_00069436-exon-scaffold_5-1575043694:121077..121390Clytia hemisphaericaexon
TCONS_00069436-exon-scaffold_5-1510915933:121630..121830TCONS_00069436-exon-scaffold_5-1510915933:121630..121830Clytia hemisphaericaexon
TCONS_00069436-exon-scaffold_5-1510915933:121077..121390TCONS_00069436-exon-scaffold_5-1510915933:121077..121390Clytia hemisphaericaexon
TCONS_00069436-exon-scaffold_5-1491911889:121630..121830TCONS_00069436-exon-scaffold_5-1491911889:121630..121830Clytia hemisphaericaexon
TCONS_00069436-exon-scaffold_5-1491911889:121077..121390TCONS_00069436-exon-scaffold_5-1491911889:121077..121390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:121077..121830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.2416	45.1568	37.1706	38.6668	3.24377	3.88015	0.00843646	2.2826	6.05	4.49928	9.42222	3.84148	4.49431	3.50626	3.42106	1.90757	5.63869	7.21	1.73426	0.248726	4.91228	5.27831	17.1011	17.4854	2.89416	1.97988	6.85305	6.17459	8.76435	8.73282
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_II_Rpb4_core
IPR005574RNA_pol_II_Rpb4
IPR010997HRDC-like
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0044237cellular metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
Blast
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BLAST of TCONS_00069436 vs. Swiss-Prot (Human)
Match: RPC9 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.335e-23
Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = -2 
Query:  227 MEVVNENVATLSNAEVFQLLEDEKLIEHRI-----------TNVATVAYETIKYLEKTPAKHQDTEAVQKFMTALAPYNFTKAEKLQLLNLRPTSIVEMQLIV 502
            MEV + N A LSN EVFQLL D  L E R             N+ T+ YET+KY+ KTP +HQ  E V++F+TAL  +  TKAEKLQLLN RP + VE+QL+V
Sbjct:    1 MEVKDANSALLSNYEVFQLLTD--LKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMV 101
The following BLAST results are available for this feature:
BLAST of TCONS_00069436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC91.335e-2351.46DNA-directed RNA polymerase III subunit RPC9 OS=Ho... [more]
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