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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069431 ID=TCONS_00069431|Name=TCONS_00069431|organism=Clytia hemisphaerica|type=transcript|length=3947bp GTTTTCGAGAACATTCTAGAGTTGATTACCGCATCAATAAGCAGTTTCAA AAGAGGGGGAGAGTCAAAGTTACGTCAGTCCATTTTTTTGTAATCGGATA AGAGATTTTATGATGAGCGAATCAGTTTTCTTTTGTCTTGTCAATTCTAT AAAAACTGTGAACTGTTCATGAAAAATTCAGTACACATCACAACACATTG AGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCA AATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAAC CAAGTGATACCATTGACAACgtcaaagccaaaattcaaGATAAAGAAGGA ATCCCACCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGA TGGCCGAACCCTTTCAGACTACAACATCCAAAAAGAATCAACCCTTCACT TGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTCGTCAAAACCTTGACT GGCAAAACCATCACTTTGGAAGTCGAACCAAGTGATACCATCGACAACgt caaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACAACGTT TGATCTTCGCTGGTAAACAATTAGAAGATGGCCGAACCCTTTCCGACTAC AACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGG ACAATAACTTTTATTATCCTCATAACTTCCTTTGtaactttttgtaaatt tagcatttaaaaaaacccaaaaaataaGAGCACAAATcttaatcgaaaaa aaaatcataacactgtcgtttatttttttttttttgattattttcctcCT GTTTCGACTCATCAAGTGAACTTAcatttaatttttgaaagttgatTTTG ACCAGTTCTTAAATGAAACGTCCCTTTTCTAGGCTTAATGTCATTGATTG TCGttgattttcattgaaattaagCTATTTTCGCGAATGATTATGCatcc tttaaaaaattttgaacaggGTAATTCGCAAATCTGTCCCAGCCAAAAAA TCCTTTAAAACTTCTAAAAAGGCACAAAATAGTCTTAAACAGTATTTCGG GACCCTAAAATGCCTAAACTTTCACGGATTTTGCCCTCTTCGTAAAAAAT TGATACAAATCGATGAAGCTTCGAAATCACAATAAACTGGTACCTGTTTT CAGCCCTCaaattgaaaaacaacaaatttgaGTGAATTCAAAATGTGTGG AAGATGTTTAAACCAACCTGCAAAGGGTCNtgaaaaacaacaaatttgaG TGAATTCAAAATGTGTGGAAGATGTTTAAACCATCCTGCAAAGGGttatt tttactctttacgACTTTTGATATGGTATTCTAAATCTTACGAGAGGATC TAATTTTTTGTCCGGTACTACCGgatgacccacgaaaaagtataagagtt tggagggaaaaattaaattttaactaatttcttttttcatggtaaagagg aaaggcaaacttaaattttaatgtatcatattttaattttggaaaagtag ttatcgagatatggaggtataaagtcaaaagtcattataaaacacagtca aaaaacaaataaaaagagaCATCGAGTGAGAAgcatattttgatttcttt tgccGGAAGGATTCAGAAAAGAATAACAAAGGTTGACAattcttttttat gatattcATTCATTTGGAAAAATACGACCCCTAGCATTAATATAGCGACG AGCCCTAGAAGTAATTCCATCGAAAGCGCCTCTGATCATTTCCTGATCTG AGTTGTTACAAGCTCTGACGATTGCTGCTTTCAACTGATTGATGGTTagg cattttgaaaaaaattctttatgcTACTTTTGGTACTTTTCATTTATTCC CAAAAGAACGATTTGGGAATTGTCTAAAATTCGATAGACAAAGAAATAGC AAATGATCAAAGGAAAGTTGTTTGTTCTGATACAAATTtgatactgtctt ttttgacgttttttgactgtttttttataatgacttttgactttatacct ccatatctcgataactacttttccaaaattaaaaaattgatacatcaaaa ttttaagtttgcctttcctctttaccatgaaaagagaatttttttctgaC ACAGTCACCCTCCAAACTCTTACattttttcgtgggtcacccggtagggT TGGCCAAGCTTGACGTTAATACTCTCAGATTTACGAAATGCGACCGAACT TTTCGACCTTGCGACAGTTTGTAATACCGCCTAAGTTAAAGTcattgaaa atgcttttgaagaGGAGTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAA ATCTTTGTAATCTTGTAAAACAATATTCTAACTTCAAAATCGTAAAGTTT CATTGCATTATTAGCCTTTACAGTAAAGGCCTTTTTAAACTCAAAGAACA ACCGTTTTTATCGGATTCGAGGATCGTTTGTCGCTTTTTACTATTATGTT TACGattaaattaatatttttgaataattgtTTCACAGTGATGATAATGA TACAAGAATCCAAGAATCAGTGTTGTCAAAATTGTGATAGCTACGCACTT CTTCACAAAGTTGatttctttcttcattttcgattttttttatatgtatt ttgtttttcttttcaagaagACGAAAACCGAATCTTTTATATGATAGCAT ACGGCTTCTATCCATTTCTcgacaaaaatatgttccatcATTCGTCATAT TTCTCACCTTTCTTTCAGGCAATGGCACAGATCCAGATAACAGCAACAGT ACAATCACCATGAACTCTTCGTCTTCCATCATCATGCCCTCTTCGTCTTC CATCAACGTGTCTTCTACATTGTCCACAGAATCTGTCTCAATGAACGTCA CCGTCTCCCCAAATGTTTCATCGTCGGCAACAATGAATGAAACATCGTCC GTCGTTTCGCCCTCCTCTTCTTCATCCACCGTTGCCTCCTCCACTGTGGC TCCACCCACTACCACCACTACAACCAAAATGCCACCAAAGAAAGGAAGTG GGCGCCGCTTTGATACCGGTTCGTTTATCGGTGGAATGTTTGTCATGATC TTCGTGATCGGATTGGTTTATTTCATTCGCAAGTTATACAAGCGAAGAAA CCCGAACTACTCCACACTCCACTAAACCGATTAACATTCTCGTCATTAAG TTTTTACTGATGATGACGACACATAAACACTTACACTATTTTTATGCATT GATCTTTGGAggtataattttcttttctcaGCTTGTATAATTGTAATACT TTTAGAAATagataactttttgttttttaaccGCATCTTAGGTGTAGGAC TTATTTGGTTATGTTaagtttttttgtatgttttaaaatattgttttgta tattttatgtttgaggACTATGTATAATGCTAATCATTTTTATAGTGGAT TTCATGACATTATAGAATATACACGAAGCCAGATCGTATCTGtaggaaat aataaaaatggttttaaataatttgactAACATCCGGTCAATATTCAACT TGTTTTTAAGCCTATTTTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCA TGGTTAATAAATTCTCTTTTGTTCCGCTCACCTGAACGAGGTAATGGAGC CATGGCCTTTGTATTTTAgatttctttgtttgtttgtaagAGACTACGCT TaggtttttgtaatttctttcttttatttttaatttgtgCACCCGCTTAA TggtatacattttttatttatttgtttatttttggtttttgataAGATTC TGGTTTTTAGTTGCAAAAGGTAATTAATGCATTCGtgttaatgtcaaaaa ttcGTTCTACGATTTCCTGTTCGCCAAACGTTTAATATACTCACTTTGCA TCagcaaattttattattgctaAAATTAACTATTTCGGTCAATAGCT Run BLAST on NCBI transcript from alignment at scaffold_5:56860..61392- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069431 ID=TCONS_00069431|Name=TCONS_00069431|organism=Clytia hemisphaerica|type=transcript|length=4533bp|location=Sequence derived from alignment at scaffold_5:56860..61392- (Clytia hemisphaerica) GTTTTCGAGAACATTCTAGAGTTGATTACCGCATCAATAAGCAGTTTCAA
AAGAGGGGGAGAGTCAAAGTTACGTCAGTCCATTTTTTTGTAATCGGATA
AGAGATTTTATGATGAGCGAATCAGTTTTCTTTTGTCTTGTCAATTCTAT
AAAAACTGTGAACTGTTCATGAAAAATTCAGTACACATCACAACACATTG
AGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCA
AATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAAC
CAAGTGATACCATTGACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGA
ATCCCACCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGA
TGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAACCCTTCACT
TGGTCTTGCGATTGAGAGGAGGTATGCAAATTTTCGTCAAGACTTTGACT
GGTAAAACCATCACTTTAGNCTGTTCATGAAAAATTCAGTACACATCACA
ACACATTGAGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATC
AAGATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGA
AGTCGAACCAAGTGATACCATTGACAACGTCAAAGCCAAAATTCAAGATA
AAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCGGGCAAACAA
TTAGAAGATGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAAC
CCTTCACTTGGTTTTGCGATTGAGAGGAGGTATGCAAATTTTCGTCAAGA
CTTTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATC
GACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGACCA
ACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTT
CCGATTACAACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGATTG
AGAGGAGGTATGCAAATCTTCGTCAAAACCTTGACTGGCAAAACCATCAC
TTTGGAAGTCGAACCAAGTGATACCATCGACAACGTCAAAGCCAAAATTC
AAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTGGT
AAACAATTAGAAGATGGCCGAACCCTTTCCGACTACAACATCCAAAAAGA
ATCAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGGACAATAACTTTTAT
TATCCTCATAACTTCCTTTGTAACTTTTTGTAAATTTAGCATTTAAAAAA
ACCCAAAAAATAAGAGCACAAATCTTAATCGAAAAAAAAATCATAACACT
GTCGTTTATTTTTTTTTTTTTGATTATTTTCCTCCTGTTTCGACTCATCA
AGTGAACTTACATTTAATTTTTGAAAGTTGATTTTGACCAGTTCTTAAAT
GAAACGTCCCTTTTCTAGGCTTAATGTCATTGATTGTCGTTGATTTTCAT
TGAAATTAAGCTATTTTCGCGAATGATTATGCATCCTTTAAAAAATTTTG
AACAGGGTAATTCGCAAATCTGTCCCAGCCAAAAAATCCTTTAAAACTTC
TAAAAAGGCACAAAATAGTCTTAAACAGTATTTCGGGACCCTAAAATGCC
TAAACTTTCACGGATTTTGCCCTCTTCGTAAAAAATTGATACAAATCGAT
GAAGCTTCGAAATCACAATAAACTGGTACCTGTTTTCAGCCCTCAAATTG
AAAAACAACAAATTTGAGTGAATTCAAAATGTGTGGAAGATGTTTAAACC
AACCTGCAAAGGGTCNTGAAAAACAACAAATTTGAGTGAATTCAAAATGT
GTGGAAGATGTTTAAACCATCCTGCAAAGGGTTATTTTTACTCTTTACGA
CTTTTGATATGGTATTCTAAATCTTACGAGAGGATCTAATTTTTTGTCCG
GTACTACCGGATGACCCACGAAAAAGTATAAGAGTTTGGAGGGAAAAATT
AAATTTTAACTAATTTCTTTTTTCATGGTAAAGAGGAAAGGCAAACTTAA
ATTTTAATGTATCATATTTTAATTTTGGAAAAGTAGTTATCGAGATATGG
AGGTATAAAGTCAAAAGTCATTATAAAACACAGTCAAAAAACAAATAAAA
AGAGACATCGAGTGAGAAGCATATTTTGATTTCTTTTGCCGGAAGGATTC
AGAAAAGAATAACAAAGGTTGACAATTCTTTTTTATGATATTCATTCATT
TGGAAAAATACGACCCCTAGCATTAATATAGCGACGAGCCCTAGAAGTAA
TTCCATCGAAAGCGCCTCTGATCATTTCCTGATCTGAGTTGTTACAAGCT
CTGACGATTGCTGCTTTCAACTGATTGATGGTTAGGCATTTTGAAAAAAA
TTCTTTATGCTACTTTTGGTACTTTTCATTTATTCCCAAAAGAACGATTT
GGGAATTGTCTAAAATTCGATAGACAAAGAAATAGCAAATGATCAAAGGA
AAGTTGTTTGTTCTGATACAAATTTGATACTGTCTTTTTTGACGTTTTTT
GACTGTTTTTTTATAATGACTTTTGACTTTATACCTCCATATCTCGATAA
CTACTTTTCCAAAATTAAAAAATTGATACATCAAAATTTTAAGTTTGCCT
TTCCTCTTTACCATGAAAAGAGAATTTTTTTCTGACACAGTCACCCTCCA
AACTCTTACATTTTTTCGTGGGTCACCCGGTAGGGTTGGCCAAGCTTGAC
GTTAATACTCTCAGATTTACGAAATGCGACCGAACTTTTCGACCTTGCGA
CAGTTTGTAATACCGCCTAAGTTAAAGTCATTGAAAATGCTTTTGAAGAG
GAGTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAAATCTTTGTAATCTT
GTAAAACAATATTCTAACTTCAAAATCGTAAAGTTTCATTGCATTATTAG
CCTTTACAGTAAAGGCCTTTTTAAACTCAAAGAACAACCGTTTTTATCGG
ATTCGAGGATCGTTTGTCGCTTTTTACTATTATGTTTACGATTAAATTAA
TATTTTTGAATAATTGTTTCACAGTGATGATAATGATACAAGAATCCAAG
AATCAGTGTTGTCAAAATTGTGATAGCTACGCACTTCTTCACAAAGTTGA
TTTCTTTCTTCATTTTCGATTTTTTTTATATGTATTTTGTTTTTCTTTTC
AAGAAGACGAAAACCGAATCTTTTATATGATAGCATACGGCTTCTATCCA
TTTCTCGACAAAAATATGTTCCATCATTCGTCATATTTCTCACCTTTCTT
TCAGGCAATGGCACAGATCCAGATAACAGCAACAGTACAATCACCATGAA
CTCTTCGTCTTCCATCATCATGCCCTCTTCGTCTTCCATCAACGTGTCTT
CTACATTGTCCACAGAATCTGTCTCAATGAACGTCACCGTCTCCCCAAAT
GTTTCATCGTCGGCAACAATGAATGAAACATCGTCCGTCGTTTCGCCCTC
CTCTTCTTCATCCACCGTTGCCTCCTCCACTGTGGCTCCACCCACTACCA
CCACTACAACCAAAATGCCACCAAAGAAAGGAAGTGGGCGCCGCTTTGAT
ACCGGTTCGTTTATCGGTGGAATGTTTGTCATGATCTTCGTGATCGGATT
GGTTTATTTCATTCGCAAGTTATACAAGCGAAGAAACCCGAACTACTCCA
CACTCCACTAAACCGATTAACATTCTCGTCATTAAGTTTTTACTGATGAT
GACGACACATAAACACTTACACTATTTTTATGCATTGATCTTTGGAGGTA
TAATTTTCTTTTCTCAGCTTGTATAATTGTAATACTTTTAGAAATAGATA
ACTTTTTGTTTTTTAACCGCATCTTAGGTGTAGGACTTATTTGGTTATGT
TAAGTTTTTTTGTATGTTTTAAAATATTGTTTTGTATATTTTATGTTTGA
GGACTATGTATAATGCTAATCATTTTTATAGTGGATTTCATGACATTATA
GAATATACACGAAGCCAGATCGTATCTGTAGGAAATAATAAAAATGGTTT
TAAATAATTTGACTAACATCCGGTCAATATTCAACTTGTTTTTAAGCCTA
TTTTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCATGGTTAATAAATTC
TCTTTTGTTCCGCTCACCTGAACGAGGTAATGGAGCCATGGCCTTTGTAT
TTTAGATTTCTTTGTTTGTTTGTAAGAGACTACGCTTAGGTTTTTGTAAT
TTCTTTCTTTTATTTTTAATTTGTGCACCCGCTTAATGGTATACATTTTT
TATTTATTTGTTTATTTTTGGTTTTTGATAAGATTCTGGTTTTTAGTTGC
AAAAGGTAATTAATGCATTCGTGTTAATGTCAAAAATTCGTTCTACGATT
TCCTGTTCGCCAAACGTTTAATATACTCACTTTGCATCAGCAAATTTTAT
TATTGCTAAAATTAACTATTTCGGTCAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069431-exon-scaffold_5-1575043694:60968..61392 | TCONS_00069431-exon-scaffold_5-1575043694:60968..61392 | Clytia hemisphaerica | exon |
TCONS_00069431-exon-scaffold_5-1575043694:56860..60381 | TCONS_00069431-exon-scaffold_5-1575043694:56860..60381 | Clytia hemisphaerica | exon |
TCONS_00069431-exon-scaffold_5-1510915933:60968..61392 | TCONS_00069431-exon-scaffold_5-1510915933:60968..61392 | Clytia hemisphaerica | exon |
TCONS_00069431-exon-scaffold_5-1510915933:56860..60381 | TCONS_00069431-exon-scaffold_5-1510915933:56860..60381 | Clytia hemisphaerica | exon |
TCONS_00069431-exon-scaffold_5-1491911889:60968..61392 | TCONS_00069431-exon-scaffold_5-1491911889:60968..61392 | Clytia hemisphaerica | exon |
TCONS_00069431-exon-scaffold_5-1491911889:56860..60381 | TCONS_00069431-exon-scaffold_5-1491911889:56860..60381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:56860..61392 - |
Blast
BLAST of TCONS_00069431 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.604e-86 Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 3
Query: 246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 671
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 142 HSP 2 Score: 281.952 bits (720), Expect = 2.604e-86 Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 3
Query: 246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 671
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218 HSP 3 Score: 154.066 bits (388), Expect = 4.524e-41 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3
Query: 246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 476
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229
The following BLAST results are available for this feature:
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