TCONS_00069431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069431
Unique NameTCONS_00069431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069431 ID=TCONS_00069431|Name=TCONS_00069431|organism=Clytia hemisphaerica|type=transcript|length=3947bp
GTTTTCGAGAACATTCTAGAGTTGATTACCGCATCAATAAGCAGTTTCAA
AAGAGGGGGAGAGTCAAAGTTACGTCAGTCCATTTTTTTGTAATCGGATA
AGAGATTTTATGATGAGCGAATCAGTTTTCTTTTGTCTTGTCAATTCTAT
AAAAACTGTGAACTGTTCATGAAAAATTCAGTACACATCACAACACATTG
AGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCA
AATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAAC
CAAGTGATACCATTGACAACgtcaaagccaaaattcaaGATAAAGAAGGA
ATCCCACCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGA
TGGCCGAACCCTTTCAGACTACAACATCCAAAAAGAATCAACCCTTCACT
TGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTCGTCAAAACCTTGACT
GGCAAAACCATCACTTTGGAAGTCGAACCAAGTGATACCATCGACAACgt
caaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACAACGTT
TGATCTTCGCTGGTAAACAATTAGAAGATGGCCGAACCCTTTCCGACTAC
AACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGG
ACAATAACTTTTATTATCCTCATAACTTCCTTTGtaactttttgtaaatt
tagcatttaaaaaaacccaaaaaataaGAGCACAAATcttaatcgaaaaa
aaaatcataacactgtcgtttatttttttttttttgattattttcctcCT
GTTTCGACTCATCAAGTGAACTTAcatttaatttttgaaagttgatTTTG
ACCAGTTCTTAAATGAAACGTCCCTTTTCTAGGCTTAATGTCATTGATTG
TCGttgattttcattgaaattaagCTATTTTCGCGAATGATTATGCatcc
tttaaaaaattttgaacaggGTAATTCGCAAATCTGTCCCAGCCAAAAAA
TCCTTTAAAACTTCTAAAAAGGCACAAAATAGTCTTAAACAGTATTTCGG
GACCCTAAAATGCCTAAACTTTCACGGATTTTGCCCTCTTCGTAAAAAAT
TGATACAAATCGATGAAGCTTCGAAATCACAATAAACTGGTACCTGTTTT
CAGCCCTCaaattgaaaaacaacaaatttgaGTGAATTCAAAATGTGTGG
AAGATGTTTAAACCAACCTGCAAAGGGTCNtgaaaaacaacaaatttgaG
TGAATTCAAAATGTGTGGAAGATGTTTAAACCATCCTGCAAAGGGttatt
tttactctttacgACTTTTGATATGGTATTCTAAATCTTACGAGAGGATC
TAATTTTTTGTCCGGTACTACCGgatgacccacgaaaaagtataagagtt
tggagggaaaaattaaattttaactaatttcttttttcatggtaaagagg
aaaggcaaacttaaattttaatgtatcatattttaattttggaaaagtag
ttatcgagatatggaggtataaagtcaaaagtcattataaaacacagtca
aaaaacaaataaaaagagaCATCGAGTGAGAAgcatattttgatttcttt
tgccGGAAGGATTCAGAAAAGAATAACAAAGGTTGACAattcttttttat
gatattcATTCATTTGGAAAAATACGACCCCTAGCATTAATATAGCGACG
AGCCCTAGAAGTAATTCCATCGAAAGCGCCTCTGATCATTTCCTGATCTG
AGTTGTTACAAGCTCTGACGATTGCTGCTTTCAACTGATTGATGGTTagg
cattttgaaaaaaattctttatgcTACTTTTGGTACTTTTCATTTATTCC
CAAAAGAACGATTTGGGAATTGTCTAAAATTCGATAGACAAAGAAATAGC
AAATGATCAAAGGAAAGTTGTTTGTTCTGATACAAATTtgatactgtctt
ttttgacgttttttgactgtttttttataatgacttttgactttatacct
ccatatctcgataactacttttccaaaattaaaaaattgatacatcaaaa
ttttaagtttgcctttcctctttaccatgaaaagagaatttttttctgaC
ACAGTCACCCTCCAAACTCTTACattttttcgtgggtcacccggtagggT
TGGCCAAGCTTGACGTTAATACTCTCAGATTTACGAAATGCGACCGAACT
TTTCGACCTTGCGACAGTTTGTAATACCGCCTAAGTTAAAGTcattgaaa
atgcttttgaagaGGAGTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAA
ATCTTTGTAATCTTGTAAAACAATATTCTAACTTCAAAATCGTAAAGTTT
CATTGCATTATTAGCCTTTACAGTAAAGGCCTTTTTAAACTCAAAGAACA
ACCGTTTTTATCGGATTCGAGGATCGTTTGTCGCTTTTTACTATTATGTT
TACGattaaattaatatttttgaataattgtTTCACAGTGATGATAATGA
TACAAGAATCCAAGAATCAGTGTTGTCAAAATTGTGATAGCTACGCACTT
CTTCACAAAGTTGatttctttcttcattttcgattttttttatatgtatt
ttgtttttcttttcaagaagACGAAAACCGAATCTTTTATATGATAGCAT
ACGGCTTCTATCCATTTCTcgacaaaaatatgttccatcATTCGTCATAT
TTCTCACCTTTCTTTCAGGCAATGGCACAGATCCAGATAACAGCAACAGT
ACAATCACCATGAACTCTTCGTCTTCCATCATCATGCCCTCTTCGTCTTC
CATCAACGTGTCTTCTACATTGTCCACAGAATCTGTCTCAATGAACGTCA
CCGTCTCCCCAAATGTTTCATCGTCGGCAACAATGAATGAAACATCGTCC
GTCGTTTCGCCCTCCTCTTCTTCATCCACCGTTGCCTCCTCCACTGTGGC
TCCACCCACTACCACCACTACAACCAAAATGCCACCAAAGAAAGGAAGTG
GGCGCCGCTTTGATACCGGTTCGTTTATCGGTGGAATGTTTGTCATGATC
TTCGTGATCGGATTGGTTTATTTCATTCGCAAGTTATACAAGCGAAGAAA
CCCGAACTACTCCACACTCCACTAAACCGATTAACATTCTCGTCATTAAG
TTTTTACTGATGATGACGACACATAAACACTTACACTATTTTTATGCATT
GATCTTTGGAggtataattttcttttctcaGCTTGTATAATTGTAATACT
TTTAGAAATagataactttttgttttttaaccGCATCTTAGGTGTAGGAC
TTATTTGGTTATGTTaagtttttttgtatgttttaaaatattgttttgta
tattttatgtttgaggACTATGTATAATGCTAATCATTTTTATAGTGGAT
TTCATGACATTATAGAATATACACGAAGCCAGATCGTATCTGtaggaaat
aataaaaatggttttaaataatttgactAACATCCGGTCAATATTCAACT
TGTTTTTAAGCCTATTTTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCA
TGGTTAATAAATTCTCTTTTGTTCCGCTCACCTGAACGAGGTAATGGAGC
CATGGCCTTTGTATTTTAgatttctttgtttgtttgtaagAGACTACGCT
TaggtttttgtaatttctttcttttatttttaatttgtgCACCCGCTTAA
TggtatacattttttatttatttgtttatttttggtttttgataAGATTC
TGGTTTTTAGTTGCAAAAGGTAATTAATGCATTCGtgttaatgtcaaaaa
ttcGTTCTACGATTTCCTGTTCGCCAAACGTTTAATATACTCACTTTGCA
TCagcaaattttattattgctaAAATTAACTATTTCGGTCAATAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_5:56860..61392-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069431 ID=TCONS_00069431|Name=TCONS_00069431|organism=Clytia hemisphaerica|type=transcript|length=4533bp|location=Sequence derived from alignment at scaffold_5:56860..61392- (Clytia hemisphaerica)
GTTTTCGAGAACATTCTAGAGTTGATTACCGCATCAATAAGCAGTTTCAA AAGAGGGGGAGAGTCAAAGTTACGTCAGTCCATTTTTTTGTAATCGGATA AGAGATTTTATGATGAGCGAATCAGTTTTCTTTTGTCTTGTCAATTCTAT AAAAACTGTGAACTGTTCATGAAAAATTCAGTACACATCACAACACATTG AGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCA AATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAAC CAAGTGATACCATTGACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGA ATCCCACCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGA TGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAACCCTTCACT TGGTCTTGCGATTGAGAGGAGGTATGCAAATTTTCGTCAAGACTTTGACT GGTAAAACCATCACTTTAGNCTGTTCATGAAAAATTCAGTACACATCACA ACACATTGAGAGTAAACATTGAAGAAAAACTTCTCAACACTTCACAAATC AAGATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGA AGTCGAACCAAGTGATACCATTGACAACGTCAAAGCCAAAATTCAAGATA AAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCGGGCAAACAA TTAGAAGATGGCCGAACCCTTTCAGACTACAACATCCAGAAAGAATCAAC CCTTCACTTGGTTTTGCGATTGAGAGGAGGTATGCAAATTTTCGTCAAGA CTTTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATC GACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGACCA ACAACGTTTGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTT CCGATTACAACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGATTG AGAGGAGGTATGCAAATCTTCGTCAAAACCTTGACTGGCAAAACCATCAC TTTGGAAGTCGAACCAAGTGATACCATCGACAACGTCAAAGCCAAAATTC AAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTGGT AAACAATTAGAAGATGGCCGAACCCTTTCCGACTACAACATCCAAAAAGA ATCAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGGACAATAACTTTTAT TATCCTCATAACTTCCTTTGTAACTTTTTGTAAATTTAGCATTTAAAAAA ACCCAAAAAATAAGAGCACAAATCTTAATCGAAAAAAAAATCATAACACT GTCGTTTATTTTTTTTTTTTTGATTATTTTCCTCCTGTTTCGACTCATCA AGTGAACTTACATTTAATTTTTGAAAGTTGATTTTGACCAGTTCTTAAAT GAAACGTCCCTTTTCTAGGCTTAATGTCATTGATTGTCGTTGATTTTCAT TGAAATTAAGCTATTTTCGCGAATGATTATGCATCCTTTAAAAAATTTTG AACAGGGTAATTCGCAAATCTGTCCCAGCCAAAAAATCCTTTAAAACTTC TAAAAAGGCACAAAATAGTCTTAAACAGTATTTCGGGACCCTAAAATGCC TAAACTTTCACGGATTTTGCCCTCTTCGTAAAAAATTGATACAAATCGAT GAAGCTTCGAAATCACAATAAACTGGTACCTGTTTTCAGCCCTCAAATTG AAAAACAACAAATTTGAGTGAATTCAAAATGTGTGGAAGATGTTTAAACC AACCTGCAAAGGGTCNTGAAAAACAACAAATTTGAGTGAATTCAAAATGT GTGGAAGATGTTTAAACCATCCTGCAAAGGGTTATTTTTACTCTTTACGA CTTTTGATATGGTATTCTAAATCTTACGAGAGGATCTAATTTTTTGTCCG GTACTACCGGATGACCCACGAAAAAGTATAAGAGTTTGGAGGGAAAAATT AAATTTTAACTAATTTCTTTTTTCATGGTAAAGAGGAAAGGCAAACTTAA ATTTTAATGTATCATATTTTAATTTTGGAAAAGTAGTTATCGAGATATGG AGGTATAAAGTCAAAAGTCATTATAAAACACAGTCAAAAAACAAATAAAA AGAGACATCGAGTGAGAAGCATATTTTGATTTCTTTTGCCGGAAGGATTC AGAAAAGAATAACAAAGGTTGACAATTCTTTTTTATGATATTCATTCATT TGGAAAAATACGACCCCTAGCATTAATATAGCGACGAGCCCTAGAAGTAA TTCCATCGAAAGCGCCTCTGATCATTTCCTGATCTGAGTTGTTACAAGCT CTGACGATTGCTGCTTTCAACTGATTGATGGTTAGGCATTTTGAAAAAAA TTCTTTATGCTACTTTTGGTACTTTTCATTTATTCCCAAAAGAACGATTT GGGAATTGTCTAAAATTCGATAGACAAAGAAATAGCAAATGATCAAAGGA AAGTTGTTTGTTCTGATACAAATTTGATACTGTCTTTTTTGACGTTTTTT GACTGTTTTTTTATAATGACTTTTGACTTTATACCTCCATATCTCGATAA CTACTTTTCCAAAATTAAAAAATTGATACATCAAAATTTTAAGTTTGCCT TTCCTCTTTACCATGAAAAGAGAATTTTTTTCTGACACAGTCACCCTCCA AACTCTTACATTTTTTCGTGGGTCACCCGGTAGGGTTGGCCAAGCTTGAC GTTAATACTCTCAGATTTACGAAATGCGACCGAACTTTTCGACCTTGCGA CAGTTTGTAATACCGCCTAAGTTAAAGTCATTGAAAATGCTTTTGAAGAG GAGTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAAATCTTTGTAATCTT GTAAAACAATATTCTAACTTCAAAATCGTAAAGTTTCATTGCATTATTAG CCTTTACAGTAAAGGCCTTTTTAAACTCAAAGAACAACCGTTTTTATCGG ATTCGAGGATCGTTTGTCGCTTTTTACTATTATGTTTACGATTAAATTAA TATTTTTGAATAATTGTTTCACAGTGATGATAATGATACAAGAATCCAAG AATCAGTGTTGTCAAAATTGTGATAGCTACGCACTTCTTCACAAAGTTGA TTTCTTTCTTCATTTTCGATTTTTTTTATATGTATTTTGTTTTTCTTTTC AAGAAGACGAAAACCGAATCTTTTATATGATAGCATACGGCTTCTATCCA TTTCTCGACAAAAATATGTTCCATCATTCGTCATATTTCTCACCTTTCTT TCAGGCAATGGCACAGATCCAGATAACAGCAACAGTACAATCACCATGAA CTCTTCGTCTTCCATCATCATGCCCTCTTCGTCTTCCATCAACGTGTCTT CTACATTGTCCACAGAATCTGTCTCAATGAACGTCACCGTCTCCCCAAAT GTTTCATCGTCGGCAACAATGAATGAAACATCGTCCGTCGTTTCGCCCTC CTCTTCTTCATCCACCGTTGCCTCCTCCACTGTGGCTCCACCCACTACCA CCACTACAACCAAAATGCCACCAAAGAAAGGAAGTGGGCGCCGCTTTGAT ACCGGTTCGTTTATCGGTGGAATGTTTGTCATGATCTTCGTGATCGGATT GGTTTATTTCATTCGCAAGTTATACAAGCGAAGAAACCCGAACTACTCCA CACTCCACTAAACCGATTAACATTCTCGTCATTAAGTTTTTACTGATGAT GACGACACATAAACACTTACACTATTTTTATGCATTGATCTTTGGAGGTA TAATTTTCTTTTCTCAGCTTGTATAATTGTAATACTTTTAGAAATAGATA ACTTTTTGTTTTTTAACCGCATCTTAGGTGTAGGACTTATTTGGTTATGT TAAGTTTTTTTGTATGTTTTAAAATATTGTTTTGTATATTTTATGTTTGA GGACTATGTATAATGCTAATCATTTTTATAGTGGATTTCATGACATTATA GAATATACACGAAGCCAGATCGTATCTGTAGGAAATAATAAAAATGGTTT TAAATAATTTGACTAACATCCGGTCAATATTCAACTTGTTTTTAAGCCTA TTTTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCATGGTTAATAAATTC TCTTTTGTTCCGCTCACCTGAACGAGGTAATGGAGCCATGGCCTTTGTAT TTTAGATTTCTTTGTTTGTTTGTAAGAGACTACGCTTAGGTTTTTGTAAT TTCTTTCTTTTATTTTTAATTTGTGCACCCGCTTAATGGTATACATTTTT TATTTATTTGTTTATTTTTGGTTTTTGATAAGATTCTGGTTTTTAGTTGC AAAAGGTAATTAATGCATTCGTGTTAATGTCAAAAATTCGTTCTACGATT TCCTGTTCGCCAAACGTTTAATATACTCACTTTGCATCAGCAAATTTTAT TATTGCTAAAATTAACTATTTCGGTCAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043270XLOC_043270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069431-exon-scaffold_5-1575043694:60968..61392TCONS_00069431-exon-scaffold_5-1575043694:60968..61392Clytia hemisphaericaexon
TCONS_00069431-exon-scaffold_5-1575043694:56860..60381TCONS_00069431-exon-scaffold_5-1575043694:56860..60381Clytia hemisphaericaexon
TCONS_00069431-exon-scaffold_5-1510915933:60968..61392TCONS_00069431-exon-scaffold_5-1510915933:60968..61392Clytia hemisphaericaexon
TCONS_00069431-exon-scaffold_5-1510915933:56860..60381TCONS_00069431-exon-scaffold_5-1510915933:56860..60381Clytia hemisphaericaexon
TCONS_00069431-exon-scaffold_5-1491911889:60968..61392TCONS_00069431-exon-scaffold_5-1491911889:60968..61392Clytia hemisphaericaexon
TCONS_00069431-exon-scaffold_5-1491911889:56860..60381TCONS_00069431-exon-scaffold_5-1491911889:56860..60381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:56860..61392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000334034 9.86328e-08 0.109472 3.11078 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00069431 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.604e-86
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 3
Query:  246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 671
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 142          

HSP 2 Score: 281.952 bits (720), Expect = 2.604e-86
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 3
Query:  246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 671
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct:   77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218          

HSP 3 Score: 154.066 bits (388), Expect = 4.524e-41
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3
Query:  246 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 476
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 
Sbjct:  153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229          
The following BLAST results are available for this feature:
BLAST of TCONS_00069431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB2.604e-8698.59Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
back to top