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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069428 ID=TCONS_00069428|Name=TCONS_00069428|organism=Clytia hemisphaerica|type=transcript|length=4103bp
CGTCAGTCCATTTTTTTGTAATCGGATAAGAGATTTTATGATGAGCGAAT
CAGTTTTCTTTTGTCTTGTCAATTCTATAAAAACTGTGAACTGTTCATGA
AAAATTCAGTACACATCACAACACATTGAGAGTAAACATTGAAGAAAAAC
TTCTCAACACTTCACAAATCAAGATGCAAATTTTCGTCAAGACTTTGACT
GGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATTGACAACgt
caaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACAACGTT
TGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTTCAGACTAC
AACATCCAGAAAGAATCAACCCTTCACTTGGTTTTGCGATTGAGAGGAGG
TATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAG
TCGAACCAAGTGATACCATCGACAACgtcaaagccaaaattcaaGATAAA
GAAGGAATCCCACCAGACCAACAACGTTTGATCTTCGCTGGCAAACAATT
AGAAGATGGCCGAACCCTTTCCGATTACAACATCCAAAAAGAATCAACCC
TTCACTTGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTCGTCAAAACC
TTGACTGGCAAAACCATCACTTTGGAAGTCGAACCAAGTGATACCATCGA
CAACgtcaaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAAC
AACGTTTGATCTTCGCTGGTAAACAATTAGAAGATGGCCGAACCCTTTCC
GACTACAACATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCGCCTCCG
TGGTGGACAATAACTTTTATTATCCTCATAACTTCCTTTGtaactttttg
taaatttagcatttaaaaaaacccaaaaaataaGAGCACAAATcttaatc
gaaaaaaaaatcataacactgtcgtttatttttttttttttgattatttt
cctcCTGTTTCGACTCATCAAGTGAACTTAcatttaatttttgaaagttg
atTTTGACCAGTTCTTAAATGAAACGTCCCTTTTCTAGGCTTAATGTCAT
TGATTGTCGttgattttcattgaaattaagCTATTTTCGCGAATGATTAT
GCatcctttaaaaaattttgaacaggGTAATTCGCAAATCTGTCCCAGCC
AAAAAATCCTTTAAAACTTCTAAAAAGGCACAAAATAGTCTTAAACAGTA
TTTCGGGACCCTAAAATGCCTAAACTTTCACGGATTTTGCCCTCTTCGTA
AAAAATTGATACAAATCGATGAAGCTTCGAAATCACAATAAACTGGTACC
TGTTTTCAGCCCTCaaattgaaaaacaacaaatttgaGTGAATTCAAAAT
GTGTGGAAGATGTTTAAACCAACCTGCAAAGGGTCNtgaaaaacaacaaa
tttgaGTGAATTCAAAATGTGTGGAAGATGTTTAAACCATCCTGCAAAGG
GttatttttactctttacgACTTTTGATATGGTATTCTAAATCTTACGAG
AGGATCTAATTTTTTGTCCGGTACTACCGgatgacccacgaaaaagtata
agagtttggagggaaaaattaaattttaactaatttcttttttcatggta
aagaggaaaggcaaacttaaattttaatgtatcatattttaattttggaa
aagtagttatcgagatatggaggtataaagtcaaaagtcattataaaaca
cagtcaaaaaacaaataaaaagagaCATCGAGTGAGAAgcatattttgat
ttcttttgccGGAAGGATTCAGAAAAGAATAACAAAGGTTGACAattctt
ttttatgatattcATTCATTTGGAAAAATACGACCCCTAGCATTAATATA
GCGACGAGCCCTAGAAGTAATTCCATCGAAAGCGCCTCTGATCATTTCCT
GATCTGAGTTGTTACAAGCTCTGACGATTGCTGCTTTCAACTGATTGATG
GTTaggcattttgaaaaaaattctttatgcTACTTTTGGTACTTTTCATT
TATTCCCAAAAGAACGATTTGGGAATTGTCTAAAATTCGATAGACAAAGA
AATAGCAAATGATCAAAGGAAAGTTGTTTGTTCTGATACAAATTtgatac
tgtcttttttgacgttttttgactgtttttttataatgacttttgacttt
atacctccatatctcgataactacttttccaaaattaaaaaattgataca
tcaaaattttaagtttgcctttcctctttaccatgaaaagagaatttttt
tctgaCACAGTCACCCTCCAAACTCTTACattttttcgtgggtcacccgg
tagggTTGGCCAAGCTTGACGTTAATACTCTCAGATTTACGAAATGCGAC
CGAACTTTTCGACCTTGCGACAGTTTGTAATACCGCCTAAGTTAAAGTca
ttgaaaatgcttttgaagaGGAGTGTAATTCGCGAGAAGTCTATGCTCGC
CAAAAAATCTTTGTAATCTTGTAAAACAATATTCTAACTTCAAAATCGTA
AAGTTTCATTGCATTATTAGCCTTTACAGTAAAGGCCTTTTTAAACTCAA
AGAACAACCGTTTTTATCGGATTCGAGGATCGTTTGTCGCTTTTTACTAT
TATGTTTACGattaaattaatatttttgaataattgtTTCACAGTGATGA
TAATGATACAAGAATCCAAGAATCAGTGTTGTCAAAATTGTGATAGCTAC
GCACTTCTTCACAAAGTTGatttctttcttcattttcgattttttttata
tgtattttgtttttcttttcaagaagACGAAAACCGAATCTTTTATATGA
TAGCATACGGCTTCTATCCATTTCTcgacaaaaatatgttccatcATTCG
TCATATTTCTCACCTTTCTTTCAGGCAATGGCACAGATCCAGATAACAGC
AACAGTACAATCACCATGAACTCTTCGTCTTCCATCATCATGCCCTCTTC
GTCTTCCATCAACGTGTCTTCTACATTGTCCACAGAATCTGTCTCAATGA
ACGTCACCGTCTCCCCAAATGTTTCATCGTCGGCAACAATGAATGAAACA
TCGTCCGTCGTTTCGCCCTCCTCTTCTTCATCCACCGTTGCCTCCTCCAC
TGTGGCTCCACCCACTACCACCACTACAACCAAAATGCCACCAAAGAAAG
GAAGTGGGCGCCGCTTTGATACCGGTTCGTTTATCGGTGGAATGTTTGTC
ATGATCTTCGTGATCGGATTGGTTTATTTCATTCGCAAGTTATACAAGCG
AAGAAACCCGAACTACTCCACACTCCACTAAACCGATTAACATTCTCGTC
ATTAAGTTTTTACTGATGATGACGACACATAAACACTTACACTATTTTTA
TGCATTGATCTTTGGAggtataattttcttttctcaGCTTGTATAATTGT
AATACTTTTAGAAATagataactttttgttttttaaccGCATCTTAGGTG
TAGGACTTATTTGGTTATGTTaagtttttttgtatgttttaaaatattgt
tttgtatattttatgtttgaggACTATGTATAATGCTAATCATTTTTATA
GTGGATTTCATGACATTATAGAATATACACGAAGCCAGATCGTATCTGta
ggaaataataaaaatggttttaaataatttgactAACATCCGGTCAATAT
TCAACTTGTTTTTAAGCCTATTTTAGTTTTCAAGCCACAGTTTGGAGTTA
ATTGCATGGTTAATAAATTCTCTTTTGTTCCGCTCACCTGAACGAGGTAA
TGGAGCCATGGCCTTTGTATTTTAgatttctttgtttgtttgtaagAGAC
TACGCTTaggtttttgtaatttctttcttttatttttaatttgtgCACCC
GCTTAATggtatacattttttatttatttgtttatttttggtttttgata
AGATTCTGGTTTTTAGTTGCAAAAGGTAATTAATGCATTCGtgttaatgt
caaaaattcGTTCTACGATTTCCTGTTCGCCAAACGTTTAATATACTCAC
TTTGCATCagcaaattttattattgctaAAATTAACTATTTCGGTCAATA
GCT Run BLAST on NCBI transcript from alignment at scaffold_5:56860..61320- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069428 ID=TCONS_00069428|Name=TCONS_00069428|organism=Clytia hemisphaerica|type=transcript|length=4461bp|location=Sequence derived from alignment at scaffold_5:56860..61320- (Clytia hemisphaerica)
CGTCAGTCCATTTTTTTGTAATCGGATAAGAGATTTTATGATGAGCGAAT
CAGTTTTCTTTTGTCTTGTCAATTCTATAAAAACTGTGAACTGTTCATGA
AAAATTCAGTACACATCACAACACATTGAGAGTAAACATTGAAGAAAAAC
TTCTCAACACTTCACAAATCAAGATGCAAATTTTCGTCAAGACTTTGACT
GGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATTGACAACGT
CAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTT
TGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTTCAGACTAC
AACATCCAGAAAGAATCAACCCTTCACTTGGTCTTGCGATTGAGAGGAGG
TATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTTTAGNCT
GTTCATGAAAAATTCAGTACACATCACAACACATTGAGAGTAAACATTGA
AGAAAAACTTCTCAACACTTCACAAATCAAGATGCAAATTTTCGTCAAGA
CTTTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATT
GACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA
ACAACGTTTGATCTTCGCGGGCAAACAATTAGAAGATGGCCGAACCCTTT
CAGACTACAACATCCAGAAAGAATCAACCCTTCACTTGGTTTTGCGATTG
AGAGGAGGTATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCAC
TTTAGAAGTCGAACCAAGTGATACCATCGACAACGTCAAAGCCAAAATTC
AAGATAAAGAAGGAATCCCACCAGACCAACAACGTTTGATCTTCGCTGGC
AAACAATTAGAAGATGGCCGAACCCTTTCCGATTACAACATCCAAAAAGA
ATCAACCCTTCACTTGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTCG
TCAAAACCTTGACTGGCAAAACCATCACTTTGGAAGTCGAACCAAGTGAT
ACCATCGACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACC
AGATCAACAACGTTTGATCTTCGCTGGTAAACAATTAGAAGATGGCCGAA
CCCTTTCCGACTACAACATCCAAAAAGAATCAACCCTTCACTTGGTCTTG
CGCCTCCGTGGTGGACAATAACTTTTATTATCCTCATAACTTCCTTTGTA
ACTTTTTGTAAATTTAGCATTTAAAAAAACCCAAAAAATAAGAGCACAAA
TCTTAATCGAAAAAAAAATCATAACACTGTCGTTTATTTTTTTTTTTTTG
ATTATTTTCCTCCTGTTTCGACTCATCAAGTGAACTTACATTTAATTTTT
GAAAGTTGATTTTGACCAGTTCTTAAATGAAACGTCCCTTTTCTAGGCTT
AATGTCATTGATTGTCGTTGATTTTCATTGAAATTAAGCTATTTTCGCGA
ATGATTATGCATCCTTTAAAAAATTTTGAACAGGGTAATTCGCAAATCTG
TCCCAGCCAAAAAATCCTTTAAAACTTCTAAAAAGGCACAAAATAGTCTT
AAACAGTATTTCGGGACCCTAAAATGCCTAAACTTTCACGGATTTTGCCC
TCTTCGTAAAAAATTGATACAAATCGATGAAGCTTCGAAATCACAATAAA
CTGGTACCTGTTTTCAGCCCTCAAATTGAAAAACAACAAATTTGAGTGAA
TTCAAAATGTGTGGAAGATGTTTAAACCAACCTGCAAAGGGTCNTGAAAA
ACAACAAATTTGAGTGAATTCAAAATGTGTGGAAGATGTTTAAACCATCC
TGCAAAGGGTTATTTTTACTCTTTACGACTTTTGATATGGTATTCTAAAT
CTTACGAGAGGATCTAATTTTTTGTCCGGTACTACCGGATGACCCACGAA
AAAGTATAAGAGTTTGGAGGGAAAAATTAAATTTTAACTAATTTCTTTTT
TCATGGTAAAGAGGAAAGGCAAACTTAAATTTTAATGTATCATATTTTAA
TTTTGGAAAAGTAGTTATCGAGATATGGAGGTATAAAGTCAAAAGTCATT
ATAAAACACAGTCAAAAAACAAATAAAAAGAGACATCGAGTGAGAAGCAT
ATTTTGATTTCTTTTGCCGGAAGGATTCAGAAAAGAATAACAAAGGTTGA
CAATTCTTTTTTATGATATTCATTCATTTGGAAAAATACGACCCCTAGCA
TTAATATAGCGACGAGCCCTAGAAGTAATTCCATCGAAAGCGCCTCTGAT
CATTTCCTGATCTGAGTTGTTACAAGCTCTGACGATTGCTGCTTTCAACT
GATTGATGGTTAGGCATTTTGAAAAAAATTCTTTATGCTACTTTTGGTAC
TTTTCATTTATTCCCAAAAGAACGATTTGGGAATTGTCTAAAATTCGATA
GACAAAGAAATAGCAAATGATCAAAGGAAAGTTGTTTGTTCTGATACAAA
TTTGATACTGTCTTTTTTGACGTTTTTTGACTGTTTTTTTATAATGACTT
TTGACTTTATACCTCCATATCTCGATAACTACTTTTCCAAAATTAAAAAA
TTGATACATCAAAATTTTAAGTTTGCCTTTCCTCTTTACCATGAAAAGAG
AATTTTTTTCTGACACAGTCACCCTCCAAACTCTTACATTTTTTCGTGGG
TCACCCGGTAGGGTTGGCCAAGCTTGACGTTAATACTCTCAGATTTACGA
AATGCGACCGAACTTTTCGACCTTGCGACAGTTTGTAATACCGCCTAAGT
TAAAGTCATTGAAAATGCTTTTGAAGAGGAGTGTAATTCGCGAGAAGTCT
ATGCTCGCCAAAAAATCTTTGTAATCTTGTAAAACAATATTCTAACTTCA
AAATCGTAAAGTTTCATTGCATTATTAGCCTTTACAGTAAAGGCCTTTTT
AAACTCAAAGAACAACCGTTTTTATCGGATTCGAGGATCGTTTGTCGCTT
TTTACTATTATGTTTACGATTAAATTAATATTTTTGAATAATTGTTTCAC
AGTGATGATAATGATACAAGAATCCAAGAATCAGTGTTGTCAAAATTGTG
ATAGCTACGCACTTCTTCACAAAGTTGATTTCTTTCTTCATTTTCGATTT
TTTTTATATGTATTTTGTTTTTCTTTTCAAGAAGACGAAAACCGAATCTT
TTATATGATAGCATACGGCTTCTATCCATTTCTCGACAAAAATATGTTCC
ATCATTCGTCATATTTCTCACCTTTCTTTCAGGCAATGGCACAGATCCAG
ATAACAGCAACAGTACAATCACCATGAACTCTTCGTCTTCCATCATCATG
CCCTCTTCGTCTTCCATCAACGTGTCTTCTACATTGTCCACAGAATCTGT
CTCAATGAACGTCACCGTCTCCCCAAATGTTTCATCGTCGGCAACAATGA
ATGAAACATCGTCCGTCGTTTCGCCCTCCTCTTCTTCATCCACCGTTGCC
TCCTCCACTGTGGCTCCACCCACTACCACCACTACAACCAAAATGCCACC
AAAGAAAGGAAGTGGGCGCCGCTTTGATACCGGTTCGTTTATCGGTGGAA
TGTTTGTCATGATCTTCGTGATCGGATTGGTTTATTTCATTCGCAAGTTA
TACAAGCGAAGAAACCCGAACTACTCCACACTCCACTAAACCGATTAACA
TTCTCGTCATTAAGTTTTTACTGATGATGACGACACATAAACACTTACAC
TATTTTTATGCATTGATCTTTGGAGGTATAATTTTCTTTTCTCAGCTTGT
ATAATTGTAATACTTTTAGAAATAGATAACTTTTTGTTTTTTAACCGCAT
CTTAGGTGTAGGACTTATTTGGTTATGTTAAGTTTTTTTGTATGTTTTAA
AATATTGTTTTGTATATTTTATGTTTGAGGACTATGTATAATGCTAATCA
TTTTTATAGTGGATTTCATGACATTATAGAATATACACGAAGCCAGATCG
TATCTGTAGGAAATAATAAAAATGGTTTTAAATAATTTGACTAACATCCG
GTCAATATTCAACTTGTTTTTAAGCCTATTTTAGTTTTCAAGCCACAGTT
TGGAGTTAATTGCATGGTTAATAAATTCTCTTTTGTTCCGCTCACCTGAA
CGAGGTAATGGAGCCATGGCCTTTGTATTTTAGATTTCTTTGTTTGTTTG
TAAGAGACTACGCTTAGGTTTTTGTAATTTCTTTCTTTTATTTTTAATTT
GTGCACCCGCTTAATGGTATACATTTTTTATTTATTTGTTTATTTTTGGT
TTTTGATAAGATTCTGGTTTTTAGTTGCAAAAGGTAATTAATGCATTCGT
GTTAATGTCAAAAATTCGTTCTACGATTTCCTGTTCGCCAAACGTTTAAT
ATACTCACTTTGCATCAGCAAATTTTATTATTGCTAAAATTAACTATTTC
GGTCAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00069428-exon-scaffold_5-1575043694:60968..61320 | TCONS_00069428-exon-scaffold_5-1575043694:60968..61320 | Clytia hemisphaerica | exon |
| TCONS_00069428-exon-scaffold_5-1575043694:56860..60609 | TCONS_00069428-exon-scaffold_5-1575043694:56860..60609 | Clytia hemisphaerica | exon |
| TCONS_00069428-exon-scaffold_5-1510915933:60968..61320 | TCONS_00069428-exon-scaffold_5-1510915933:60968..61320 | Clytia hemisphaerica | exon |
| TCONS_00069428-exon-scaffold_5-1510915933:56860..60609 | TCONS_00069428-exon-scaffold_5-1510915933:56860..60609 | Clytia hemisphaerica | exon |
| TCONS_00069428-exon-scaffold_5-1491911889:60968..61320 | TCONS_00069428-exon-scaffold_5-1491911889:60968..61320 | Clytia hemisphaerica | exon |
| TCONS_00069428-exon-scaffold_5-1491911889:56860..60609 | TCONS_00069428-exon-scaffold_5-1491911889:56860..60609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_5 | supercontig | scaffold_5:56860..61320 - |
Blast
BLAST of TCONS_00069428 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1) HSP 1 Score: 430.254 bits (1105), Expect = 6.278e-140 Identity = 215/218 (98.62%), Postives = 218/218 (100.00%), Query Frame = 3
Query: 174 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 827
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218 HSP 2 Score: 302.368 bits (773), Expect = 1.705e-93 Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 3
Query: 174 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 632
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229
The following BLAST results are available for this feature:
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