|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069427 ID=TCONS_00069427|Name=TCONS_00069427|organism=Clytia hemisphaerica|type=transcript|length=3831bp
GCGAATCAGTTTTCTTTTGTCTTGTCAATTCTATAAAAACTGTGAACTGT
TCATGAAAAATTCAGTACACATCACAACACATTGAGAGTAAACATTGAAG
AAAAACTTCTCAACACTTCACAAATCAAGATGCAAATTTTCGTCAAGACT
TTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATTGA
CAACgtcaaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAAC
AACGTTTGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTTCA
GACTACAACATCCAGAAAGAATCAACCCTTCACTTGGTTTTGCGATTGAG
AGGAGGTATGCAAATCTTCGTCAAAACCTTGACTGGCAAAACCATCACTT
TGGAAGTCGAACCAAGTGATACCATCGACAACgtcaaagccaaaattcaa
GATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTGGTAA
ACAATTAGAAGATGGCCGAACCCTTTCCGACTACAACATCCAAAAAGAAT
CAACCCTTCACTTGGTCTTGCGCCTCCGTGGTGGACAATAACTTTTATTA
TCCTCATAACTTCCTTTGtaactttttgtaaatttagcatttaaaaaaac
ccaaaaaataaGAGCACAAATcttaatcgaaaaaaaaatcataacactgt
cgtttatttttttttttttgattattttcctcCTGTTTCGACTCATCAAG
TGAACTTAcatttaatttttgaaagttgatTTTGACCAGTTCTTAAATGA
AACGTCCCTTTTCTAGGCTTAATGTCATTGATTGTCGttgattttcattg
aaattaagCTATTTTCGCGAATGATTATGCatcctttaaaaaattttgaa
caggGTAATTCGCAAATCTGTCCCAGCCAAAAAATCCTTTAAAACTTCTA
AAAAGGCACAAAATAGTCTTAAACAGTATTTCGGGACCCTAAAATGCCTA
AACTTTCACGGATTTTGCCCTCTTCGTAAAAAATTGATACAAATCGATGA
AGCTTCGAAATCACAATAAACTGGTACCTGTTTTCAGCCCTCaaattgaa
aaacaacaaatttgaGTGAATTCAAAATGTGTGGAAGATGTTTAAACCAA
CCTGCAAAGGGTCNtgaaaaacaacaaatttgaGTGAATTCAAAATGTGT
GGAAGATGTTTAAACCATCCTGCAAAGGGttatttttactctttacgACT
TTTGATATGGTATTCTAAATCTTACGAGAGGATCTAATTTTTTGTCCGGT
ACTACCGgatgacccacgaaaaagtataagagtttggagggaaaaattaa
attttaactaatttcttttttcatggtaaagaggaaaggcaaacttaaat
tttaatgtatcatattttaattttggaaaagtagttatcgagatatggag
gtataaagtcaaaagtcattataaaacacagtcaaaaaacaaataaaaag
agaCATCGAGTGAGAAgcatattttgatttcttttgccGGAAGGATTCAG
AAAAGAATAACAAAGGTTGACAattcttttttatgatattcATTCATTTG
GAAAAATACGACCCCTAGCATTAATATAGCGACGAGCCCTAGAAGTAATT
CCATCGAAAGCGCCTCTGATCATTTCCTGATCTGAGTTGTTACAAGCTCT
GACGATTGCTGCTTTCAACTGATTGATGGTTaggcattttgaaaaaaatt
ctttatgcTACTTTTGGTACTTTTCATTTATTCCCAAAAGAACGATTTGG
GAATTGTCTAAAATTCGATAGACAAAGAAATAGCAAATGATCAAAGGAAA
GTTGTTTGTTCTGATACAAATTtgatactgtcttttttgacgttttttga
ctgtttttttataatgacttttgactttatacctccatatctcgataact
acttttccaaaattaaaaaattgatacatcaaaattttaagtttgccttt
cctctttaccatgaaaagagaatttttttctgaCACAGTCACCCTCCAAA
CTCTTACattttttcgtgggtcacccggtagggTTGGCCAAGCTTGACGT
TAATACTCTCAGATTTACGAAATGCGACCGAACTTTTCGACCTTGCGACA
GTTTGTAATACCGCCTAAGTTAAAGTcattgaaaatgcttttgaagaGGA
GTGTAATTCGCGAGAAGTCTATGCTCGCCAAAAAATCTTTGTAATCTTGT
AAAACAATATTCTAACTTCAAAATCGTAAAGTTTCATTGCATTATTAGCC
TTTACAGTAAAGGCCTTTTTAAACTCAAAGAACAACCGTTTTTATCGGAT
TCGAGGATCGTTTGTCGCTTTTTACTATTATGTTTACGattaaattaata
tttttgaataattgtTTCACAGTGATGATAATGATACAAGAATCCAAGAA
TCAGTGTTGTCAAAATTGTGATAGCTACGCACTTCTTCACAAAGTTGatt
tctttcttcattttcgattttttttatatgtattttgtttttcttttcaa
gaagACGAAAACCGAATCTTTTATATGATAGCATACGGCTTCTATCCATT
TCTcgacaaaaatatgttccatcATTCGTCATATTTCTCACCTTTCTTTC
AGGCAATGGCACAGATCCAGATAACAGCAACAGTACAATCACCATGAACT
CTTCGTCTTCCATCATCATGCCCTCTTCGTCTTCCATCAACGTGTCTTCT
ACATTGTCCACAGAATCTGTCTCAATGAACGTCACCGTCTCCCCAAATGT
TTCATCGTCGGCAACAATGAATGAAACATCGTCCGTCGTTTCGCCCTCCT
CTTCTTCATCCACCGTTGCCTCCTCCACTGTGGCTCCACCCACTACCACC
ACTACAACCAAAATGCCACCAAAGAAAGGAAGTGGGCGCCGCTTTGATAC
CGGTTCGTTTATCGGTGGAATGTTTGTCATGATCTTCGTGATCGGATTGG
TTTATTTCATTCGCAAGTTATACAAGCGAAGAAACCCGAACTACTCCACA
CTCCACTAAACCGATTAACATTCTCGTCATTAAGTTTTTACTGATGATGA
CGACACATAAACACTTACACTATTTTTATGCATTGATCTTTGGAggtata
attttcttttctcaGCTTGTATAATTGTAATACTTTTAGAAATagataac
tttttgttttttaaccGCATCTTAGGTGTAGGACTTATTTGGTTATGTTa
agtttttttgtatgttttaaaatattgttttgtatattttatgtttgagg
ACTATGTATAATGCTAATCATTTTTATAGTGGATTTCATGACATTATAGA
ATATACACGAAGCCAGATCGTATCTGtaggaaataataaaaatggtttta
aataatttgactAACATCCGGTCAATATTCAACTTGTTTTTAAGCCTATT
TTAGTTTTCAAGCCACAGTTTGGAGTTAATTGCATGGTTAATAAATTCTC
TTTTGTTCCGCTCACCTGAACGAGGTAATGGAGCCATGGCCTTTGTATTT
TAgatttctttgtttgtttgtaagAGACTACGCTTaggtttttgtaattt
ctttcttttatttttaatttgtgCACCCGCTTAATggtatacatttttta
tttatttgtttatttttggtttttgataAGATTCTGGTTTTTAGTTGCAA
AAGGTAATTAATGCATTCGtgttaatgtcaaaaattcGTTCTACGATTTC
CTGTTCGCCAAACGTTTAATATACTCACTTTGCATCagcaaattttatta
ttgctaAAATTAACTATTTCGGTCAATAGCT Run BLAST on NCBI transcript from alignment at scaffold_5:56860..61276- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069427 ID=TCONS_00069427|Name=TCONS_00069427|organism=Clytia hemisphaerica|type=transcript|length=4417bp|location=Sequence derived from alignment at scaffold_5:56860..61276- (Clytia hemisphaerica)
GCGAATCAGTTTTCTTTTGTCTTGTCAATTCTATAAAAACTGTGAACTGT
TCATGAAAAATTCAGTACACATCACAACACATTGAGAGTAAACATTGAAG
AAAAACTTCTCAACACTTCACAAATCAAGATGCAAATTTTCGTCAAGACT
TTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGATACCATTGA
CAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAAC
AACGTTTGATCTTCGCTGGCAAACAATTAGAAGATGGCCGAACCCTTTCA
GACTACAACATCCAGAAAGAATCAACCCTTCACTTGGTCTTGCGATTGAG
AGGAGGTATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACCATCACTT
TAGNCTGTTCATGAAAAATTCAGTACACATCACAACACATTGAGAGTAAA
CATTGAAGAAAAACTTCTCAACACTTCACAAATCAAGATGCAAATTTTCG
TCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTCGAACCAAGTGAT
ACCATTGACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACC
AGATCAACAACGTTTGATCTTCGCGGGCAAACAATTAGAAGATGGCCGAA
CCCTTTCAGACTACAACATCCAGAAAGAATCAACCCTTCACTTGGTTTTG
CGATTGAGAGGAGGTATGCAAATTTTCGTCAAGACTTTGACTGGTAAAAC
CATCACTTTAGAAGTCGAACCAAGTGATACCATCGACAACGTCAAAGCCA
AAATTCAAGATAAAGAAGGAATCCCACCAGACCAACAACGTTTGATCTTC
GCTGGCAAACAATTAGAAGATGGCCGAACCCTTTCCGATTACAACATCCA
AAAAGAATCAACCCTTCACTTGGTCTTGCGATTGAGAGGAGGTATGCAAA
TCTTCGTCAAAACCTTGACTGGCAAAACCATCACTTTGGAAGTCGAACCA
AGTGATACCATCGACAACGTCAAAGCCAAAATTCAAGATAAAGAAGGAAT
CCCACCAGATCAACAACGTTTGATCTTCGCTGGTAAACAATTAGAAGATG
GCCGAACCCTTTCCGACTACAACATCCAAAAAGAATCAACCCTTCACTTG
GTCTTGCGCCTCCGTGGTGGACAATAACTTTTATTATCCTCATAACTTCC
TTTGTAACTTTTTGTAAATTTAGCATTTAAAAAAACCCAAAAAATAAGAG
CACAAATCTTAATCGAAAAAAAAATCATAACACTGTCGTTTATTTTTTTT
TTTTTGATTATTTTCCTCCTGTTTCGACTCATCAAGTGAACTTACATTTA
ATTTTTGAAAGTTGATTTTGACCAGTTCTTAAATGAAACGTCCCTTTTCT
AGGCTTAATGTCATTGATTGTCGTTGATTTTCATTGAAATTAAGCTATTT
TCGCGAATGATTATGCATCCTTTAAAAAATTTTGAACAGGGTAATTCGCA
AATCTGTCCCAGCCAAAAAATCCTTTAAAACTTCTAAAAAGGCACAAAAT
AGTCTTAAACAGTATTTCGGGACCCTAAAATGCCTAAACTTTCACGGATT
TTGCCCTCTTCGTAAAAAATTGATACAAATCGATGAAGCTTCGAAATCAC
AATAAACTGGTACCTGTTTTCAGCCCTCAAATTGAAAAACAACAAATTTG
AGTGAATTCAAAATGTGTGGAAGATGTTTAAACCAACCTGCAAAGGGTCN
TGAAAAACAACAAATTTGAGTGAATTCAAAATGTGTGGAAGATGTTTAAA
CCATCCTGCAAAGGGTTATTTTTACTCTTTACGACTTTTGATATGGTATT
CTAAATCTTACGAGAGGATCTAATTTTTTGTCCGGTACTACCGGATGACC
CACGAAAAAGTATAAGAGTTTGGAGGGAAAAATTAAATTTTAACTAATTT
CTTTTTTCATGGTAAAGAGGAAAGGCAAACTTAAATTTTAATGTATCATA
TTTTAATTTTGGAAAAGTAGTTATCGAGATATGGAGGTATAAAGTCAAAA
GTCATTATAAAACACAGTCAAAAAACAAATAAAAAGAGACATCGAGTGAG
AAGCATATTTTGATTTCTTTTGCCGGAAGGATTCAGAAAAGAATAACAAA
GGTTGACAATTCTTTTTTATGATATTCATTCATTTGGAAAAATACGACCC
CTAGCATTAATATAGCGACGAGCCCTAGAAGTAATTCCATCGAAAGCGCC
TCTGATCATTTCCTGATCTGAGTTGTTACAAGCTCTGACGATTGCTGCTT
TCAACTGATTGATGGTTAGGCATTTTGAAAAAAATTCTTTATGCTACTTT
TGGTACTTTTCATTTATTCCCAAAAGAACGATTTGGGAATTGTCTAAAAT
TCGATAGACAAAGAAATAGCAAATGATCAAAGGAAAGTTGTTTGTTCTGA
TACAAATTTGATACTGTCTTTTTTGACGTTTTTTGACTGTTTTTTTATAA
TGACTTTTGACTTTATACCTCCATATCTCGATAACTACTTTTCCAAAATT
AAAAAATTGATACATCAAAATTTTAAGTTTGCCTTTCCTCTTTACCATGA
AAAGAGAATTTTTTTCTGACACAGTCACCCTCCAAACTCTTACATTTTTT
CGTGGGTCACCCGGTAGGGTTGGCCAAGCTTGACGTTAATACTCTCAGAT
TTACGAAATGCGACCGAACTTTTCGACCTTGCGACAGTTTGTAATACCGC
CTAAGTTAAAGTCATTGAAAATGCTTTTGAAGAGGAGTGTAATTCGCGAG
AAGTCTATGCTCGCCAAAAAATCTTTGTAATCTTGTAAAACAATATTCTA
ACTTCAAAATCGTAAAGTTTCATTGCATTATTAGCCTTTACAGTAAAGGC
CTTTTTAAACTCAAAGAACAACCGTTTTTATCGGATTCGAGGATCGTTTG
TCGCTTTTTACTATTATGTTTACGATTAAATTAATATTTTTGAATAATTG
TTTCACAGTGATGATAATGATACAAGAATCCAAGAATCAGTGTTGTCAAA
ATTGTGATAGCTACGCACTTCTTCACAAAGTTGATTTCTTTCTTCATTTT
CGATTTTTTTTATATGTATTTTGTTTTTCTTTTCAAGAAGACGAAAACCG
AATCTTTTATATGATAGCATACGGCTTCTATCCATTTCTCGACAAAAATA
TGTTCCATCATTCGTCATATTTCTCACCTTTCTTTCAGGCAATGGCACAG
ATCCAGATAACAGCAACAGTACAATCACCATGAACTCTTCGTCTTCCATC
ATCATGCCCTCTTCGTCTTCCATCAACGTGTCTTCTACATTGTCCACAGA
ATCTGTCTCAATGAACGTCACCGTCTCCCCAAATGTTTCATCGTCGGCAA
CAATGAATGAAACATCGTCCGTCGTTTCGCCCTCCTCTTCTTCATCCACC
GTTGCCTCCTCCACTGTGGCTCCACCCACTACCACCACTACAACCAAAAT
GCCACCAAAGAAAGGAAGTGGGCGCCGCTTTGATACCGGTTCGTTTATCG
GTGGAATGTTTGTCATGATCTTCGTGATCGGATTGGTTTATTTCATTCGC
AAGTTATACAAGCGAAGAAACCCGAACTACTCCACACTCCACTAAACCGA
TTAACATTCTCGTCATTAAGTTTTTACTGATGATGACGACACATAAACAC
TTACACTATTTTTATGCATTGATCTTTGGAGGTATAATTTTCTTTTCTCA
GCTTGTATAATTGTAATACTTTTAGAAATAGATAACTTTTTGTTTTTTAA
CCGCATCTTAGGTGTAGGACTTATTTGGTTATGTTAAGTTTTTTTGTATG
TTTTAAAATATTGTTTTGTATATTTTATGTTTGAGGACTATGTATAATGC
TAATCATTTTTATAGTGGATTTCATGACATTATAGAATATACACGAAGCC
AGATCGTATCTGTAGGAAATAATAAAAATGGTTTTAAATAATTTGACTAA
CATCCGGTCAATATTCAACTTGTTTTTAAGCCTATTTTAGTTTTCAAGCC
ACAGTTTGGAGTTAATTGCATGGTTAATAAATTCTCTTTTGTTCCGCTCA
CCTGAACGAGGTAATGGAGCCATGGCCTTTGTATTTTAGATTTCTTTGTT
TGTTTGTAAGAGACTACGCTTAGGTTTTTGTAATTTCTTTCTTTTATTTT
TAATTTGTGCACCCGCTTAATGGTATACATTTTTTATTTATTTGTTTATT
TTTGGTTTTTGATAAGATTCTGGTTTTTAGTTGCAAAAGGTAATTAATGC
ATTCGTGTTAATGTCAAAAATTCGTTCTACGATTTCCTGTTCGCCAAACG
TTTAATATACTCACTTTGCATCAGCAAATTTTATTATTGCTAAAATTAAC
TATTTCGGTCAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069427-exon-scaffold_5-1575043694:60968..61276 | TCONS_00069427-exon-scaffold_5-1575043694:60968..61276 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1575043694:60564..60609 | TCONS_00069427-exon-scaffold_5-1575043694:60564..60609 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1575043694:56860..60335 | TCONS_00069427-exon-scaffold_5-1575043694:56860..60335 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1510915933:60968..61276 | TCONS_00069427-exon-scaffold_5-1510915933:60968..61276 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1510915933:60564..60609 | TCONS_00069427-exon-scaffold_5-1510915933:60564..60609 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1510915933:56860..60335 | TCONS_00069427-exon-scaffold_5-1510915933:56860..60335 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1491911889:60968..61276 | TCONS_00069427-exon-scaffold_5-1491911889:60968..61276 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1491911889:60564..60609 | TCONS_00069427-exon-scaffold_5-1491911889:60564..60609 | Clytia hemisphaerica | exon |
| TCONS_00069427-exon-scaffold_5-1491911889:56860..60335 | TCONS_00069427-exon-scaffold_5-1491911889:56860..60335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:56860..61276 - |
Blast
BLAST of TCONS_00069427 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.051e-86 Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1
Query: 130 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 555
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 142 HSP 2 Score: 281.952 bits (720), Expect = 2.051e-86 Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1
Query: 130 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 555
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218 HSP 3 Score: 154.066 bits (388), Expect = 4.239e-41 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
Query: 130 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 360
MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229
The following BLAST results are available for this feature:
|
