TCONS_00069425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069425
Unique NameTCONS_00069425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069425 ID=TCONS_00069425|Name=TCONS_00069425|organism=Clytia hemisphaerica|type=transcript|length=2192bp
NNcgattccttaaatgccatgacagaaaatacaatggaaaagctattaaa
atcgactcactcatgagcaaatgccaaattacaaatgccagttggtctaa
acacAGCCTTTGTCAACGTCGTTTGTtattaaattgccaattactcTTCA
TAGAATAAATTCAGAAACAACTTATGAagacaattttttgttaaaagtgt
aaaggaactcaaaacaaaagtttcatCTTCTAATCTTGTAACCGAtattt
tgactatggtcagagcccttaaaacaTCTCACATACATACATAAGTCAAG
GAATGAATGTATGATTACAGCGACTGAATATTTGACAAAACGCACCAAAA
GATGGAGGAGAGTAAGAACTTAAAACATTGGAAAcaaaaaaggtcaattt
ttCGTTGGGTTGCCAGCGCCACAATGGGCTTGTACGGTATGGAAGATGTG
ACCGGTGTTGTCATACTCTTCTTCCTCATGGAAAGACACCATCTATCACA
CAAAGACGCTGCTTTTTATTACAGCCTCACAGAAATGATATTTTGCGCTG
TACAGGCTGGCGGAAGTTTCATTCTCGGCAGATTCGCAGATTCAACTCGA
AACATCCGTTTAATTCTAATGCTTAACTTGGCGATTTGTTGTGCGTGTAA
TTTATTGTACACTCTTCCGCTACCATTATGGATTATTTTGGGTACTCGAG
GATTTATGGGTATCACCGAATCTTTACAACCCACAATAGTCGGTGAAATC
AGACGTGTATATGACACTAGCAATGAAGAACTGATCAACGCGTTGACATG
GATATTCCTATCCAACACCTTCGGCAGAAATCTTGGAGCAATCGTGCTTT
TCTCCTTCACTAAAGTATCTTTTAATATCGGTGATTGGGTCATCGATCGC
CTGATCGCCGGCAATTTATTCATCTCCCTTTTCGCTTTTATCCTTCTCAT
TCTTACTTACTTTAAAATTTCGAATGTATCTAAAGAGCTGGATGAAATAA
AACTTACTCATCACCAGACCCCCAAGGAAGCATCCAAACCAACCACTAAC
AAATCACTAATGAAATGGACTGATTTGTTCAACAAAGACATCTTATCCAT
TATCATATCGTTCGGGTTGATTAGATTCATGGCACTGGTATACATCAGTA
ATACGACCACACTTACTGCCACGAAATACGGTTGGAACAGCTCATATGTG
TTCATCTTATTCTTCTCCACAAACGCCATATTTTCGTTCCTCGCTATTGG
TTTAATCAAATCGAAAATTCTGGAAAACCAAAATCGGTCTTTTTACATCT
ACGTCCTTGCAATATGCAGTTCAGCCATCGTTCTGATATCCTTCATGCTG
ACAAAGACTGACCTACTGGACACTTTCGCAAAACAAATCATTTTCTTCAC
CATCATGAAATTGGTCAAATTCTATGGAATTTATCTTGGGAATGTGTGCT
CAAGTTTTCTACTACTTGGTCTTGTAAATTCTAAAGACAGCAGTTTTATA
TCAGGAGTGAATTCCTTCTTCTCTGTGATTATGAAAGGGACAGCATTCTT
TATCTCGTTCGAAGCTTCTTTTTATCCCGAATATTTCTACCCTCCAGCTA
TTATCGTCTTACTAACATTGGCACAATTCATGCTTTGTCGAAGAGGAATA
TACGTGTAGAAAATGGAGGGAATGTTTGTTATTTCGACCGGTATGAAATA
TTTGAACTCGatgtattttttatggctggggatttagatttcattatttt
caagtcTATAAGTTCAGTAGGGATGTAAAAATTAGCATGATATTCTGCAG
Tgaggattgatttatttgattattttcagcggggacaaaaattgtagtat
aattttccactggggacgattttttgggaagggttcccagtgggtctgtg
agaagggagtatTTCTTATGTACATAAAATTGCGTCTAAAATAGTATTTT
AACTGAATGTACAAAATATGAAACTCTGAGCAGAAAGTgttcaaagaaaa
aaagtaatttttgacttgaatattatttttacatcacTGTCAAGTTTTTG
TTGTAAAATCAAAGTCTTTGGTAAAATATAGCTCGCTCTGCGTTTTCGAG
AAACCTCCCTAAAGTTATTTAGACTCTGTCAGTGATTGTGTCGGAGAAGA
TGGTTAAAATAGTATATCTGTTACTGCtttcaatttgttttc
Run BLAST on NCBI

transcript from alignment at scaffold_5:233418..236445+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069425 ID=TCONS_00069425|Name=TCONS_00069425|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at scaffold_5:233418..236445+ (Clytia hemisphaerica)
NNcgattccttaaatgccatgacagaaaatacaatggaaaagctattaaa
atcgactcactcatgagcaaatgccaaattacaaatgccagttggtctaa
acacAGCCTTTGTCAACGTCGTTTGTtattaaattgccaattactcTTCA
TAGAATAAATTCAGAAACAACTTATGAagacaattttttgttaaaagtgt
aaaggaactcaaaacaaaagtttcatCTTCTAATCTTGTAACCGAtattt
tgactatggtcagagcccttaaaacaTCTCACATACATACATAAGTCAAG
GAATGAATGTATGATTACAGCGACTGAATATTTGACAAAACGCACCAAAA
GATGGAGGAGAGTAAGAACTTAAAACATTGGAAAcaaaaaaggtcaattt
ttCGTTGGGTTGCCAGCGCCACAATGGGCTTGTACGGTATGGAAGATGTG
ACCGGTGTTGTCATACTCTTCTTCCTCATGGAAAGACACCATCTATCACA
CAAAGACGCTGCTTTTTATTACAGCCTCACAGAAATGATATTTTGCGCTG
TACAGGCTGGCGGAAGTTTCATTCTCGGCAGATTCGCAGATTCAACTCGA
AACATCCGTTTAATTCTAATGCTTAACTTGGCGATTTGTTGTGCGTGTAA
TTTATTGTACACTCTTCCGCTACCATTATGGATTATTTTGGGTACTCGAG
GATTTATGGGTATCACCGAATCTTTACAACCCACAATAGTCGGTaggttc
tttctttttgttctaTCCATGCTCAACTCCCTCTAATTCGAATTTGTTTT
GTAATTTAAACTTAAATGTTCAGCTGCGAAgtgtataaaatactttctat
aattggAAGAAGATTCTCTATCTCTTGAAAGTAGAATTAGAAGAGAAAGA
AACTTTGACAACGCAGAAAGagaatttggcaaatttggaaaaatttcttt
tgcagAAAGGACCCAAAACCTCTTTTCTTtagataatattttttttctcc
cttgTTTTTACAGGTGAAATCAGACGTGTATATGACACTAGCAATGAAGA
ACTGATCAACGCGTTGACATGGATATTCCTATCCAACACCTTCGGCAGAA
ATCTTGGAGCAATCGTGCNGGCTGGCGGAAGTTTCATTCTCGGCAGATTC
GCAGATTCAACTCGAAACATCCGTTTAATTCTAATGCTTAACTTGGCGAT
TTGTTGTGCGTGTAATTTATTGTACACTCTTCCGCTACCATTATGGATTA
TTTTGGGTACTCGAGGATTTATGGGTATCACCGAATCTTTACAACCCACA
ATAGTCGGTaggttctttctttttgttctaTCCATGCTCAACTCCCTCTA
ATTCGAATTTGTTTTGTAATTTAAACTTAAATGTTCAGCTGCGAAgtgta
taaaatactttctataattggAAGAAGATTCTCTATCTCTTGAAAGTAGA
ATTAGAAGAGAAAGAAACTTTGACAACGCAGAAAGagaatttggcaaatt
tggaaaaatttcttttgcagAAAGGACCCAAAACCTCTTTTCTTtagata
atattttttttctcccttgTTTTTACAGGTGAAATCAGACGTGTATATGA
CACTAGCAATGAAGAACTGATCAACGCGTTGACATGGATATTCCTATCCA
ACACCTTCGGCAGAAATCTTGGAGCAATCGTGCTTTTCTCCTTCACTAAA
GTATCTTTTAATATCGGTGATTGGGTCATCGATCGCCTGATCGCCGGCAA
TTTATTCATCTCCCTTTTCGCTTTTATCCTTCTCATTCTTACTTACTTTA
AAATTTCGAATGTATCTAAAGAGCTGGATGAAATAAAACTTACTCATCAC
CAGACCCCCAAGGAAGCATCCAAACCAACCACTAACAAATCACTAATGAA
ATGGACTGATTTGTTCAACAAAGACATCTTATCCATTATCATATCGTTCG
GGTTGATTAGATTCATGGCACTGGTATACATCAGTAATACGACCACACTT
ACTGCCACGAAATACGGTTGGAACAGCTCATATGTGTTCATCTTATTCTT
CTCCACAAACGCCATATTTTCGTTCCTCGCTATTGGTTTAATCAAATCGA
AAATTCTGGAAAACCAAAATCGGTCTTTTTACATCTACGTCCTTGCAATA
TGCAGTTCAGCCATCGTTCTGATATCCTTCATGCTGACAAAGACTGACCT
ACTGGACACTTTCGCAAAACAAATCATTTTCTTCACCATCATGAAATTGG
TCAAATTCTATGGAATTTATCTTGGGAATGTGTGCTCAAGTTTTCTACTA
CTTGGTCTTGTAAATTCTAAAGACAGCAGTTTTATATCAGGAGTGAATTC
CTTCTTCTCTGTGATTATGAAAGGGACAGCATTCTTTATCTCGTTCGAAG
CTTCTTTTTATCCCGAATATTTCTACCCTCCAGCTATTATCGTCTTACTA
ACATTGGCACAATTCATGCTTTGTCGAAGAGGAATATACGTGTAGAAAAT
GGAGGGAATGTTTGTTATTTCGACCGGTATGAAATATTTGAACTCGatgt
attttttatggctggggatttagatttcattattttcaagtcTATAAGTT
CAGTAGGGATGTAAAAATTAGCATGATATTCTGCAGTgaggattgattta
tttgattattttcagcggggacaaaaattgtagtataattttccactggg
gacgattttttgggaagggttcccagtgggtctgtgagaagggagtatTT
CTTATGTACATAAAATTGCGTCTAAAATAGTATTTTAACTGAATGTACAA
AATATGAAACTCTGAGCAGAAAGTgttcaaagaaaaaaagtaatttttga
cttgaatattatttttacatcacTGTCAAGTTTTTGTTGTAAAATCAAAG
TCTTTGGTAAAATATAGCTCGCTCTGCGTTTTCGAGAAACCTCCCTAAAG
TTATTTAGACTCTGTCAGTGATTGTGTCGGAGAAGATGGTTAAAATAGTA
TATCTGTTACTGCtttcaatttgttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043268XLOC_043268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069425-exon-scaffold_5-1491911889:233418..234159TCONS_00069425-exon-scaffold_5-1491911889:233418..234159Clytia hemisphaericaexon
TCONS_00069425-exon-scaffold_5-1510915933:233418..234159TCONS_00069425-exon-scaffold_5-1510915933:233418..234159Clytia hemisphaericaexon
TCONS_00069425-exon-scaffold_5-1575043694:233418..234159TCONS_00069425-exon-scaffold_5-1575043694:233418..234159Clytia hemisphaericaexon
TCONS_00069425-exon-scaffold_5-1491911889:234996..236445TCONS_00069425-exon-scaffold_5-1491911889:234996..236445Clytia hemisphaericaexon
TCONS_00069425-exon-scaffold_5-1510915933:234996..236445TCONS_00069425-exon-scaffold_5-1510915933:234996..236445Clytia hemisphaericaexon
TCONS_00069425-exon-scaffold_5-1575043694:234996..236445TCONS_00069425-exon-scaffold_5-1575043694:234996..236445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:233418..236445 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4227	9.63452	4.49283	3.25117	0.906805	0.768747	6.4807	7.23581	12.4558	10.9262	8.05807	8.33982	18.8555	18.7025	15.8432	8.4103	1.88129	3.25909	17.0301	12.3199	0.664332	0.668109	5.37832	4.90074	0.33236	0.245903	1.6596	1.43793	2.03427	2.27737
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top