|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069417 ID=TCONS_00069417|Name=TCONS_00069417|organism=Clytia hemisphaerica|type=transcript|length=2449bp
CGGATAGAAATGTATGAGAAAGTGCCGCCTGATGGATCGAAATGATGTTT
TCGGTACCGTAGAAAACGCAGATCAATTTTTCCTTGGCGCTCCcctggta
tatagaatttaaaggtacatgcacacgatagcaaaactgcttcgctcatg
tatattcgcttcgcaaaaatatatataagaGGCTGTGCTTCCAATCTCAA
ACCAAACTCAACAAGCAGATAGATAGCAGTTACTCAAAGTGAAGAAGCAA
cgcaagaaataaaaaataatcaaattcacaTCAAATCATCTGAAGAATCA
ACTAGACAAACAAAATCAAGATGAGTTCAAATGGATATCAAGTGAAAGTT
TACTACATCGAAAATCAAGTCACCAAAGAGATCAGAAAGTTTACCATCGA
GACTGACGTCGCCTCAAACTTTGATTATCTCGGAGCAAAAATCAGACGAG
TTTTTCCAAGTTTACTGAGAAAAGATTTCGAGATTTACTGGAAAGATACT
GATGGTGATTATTTGACGATTTCATCAAATGACGAACTGATTTGTGCATG
GGATTCAATCTTCGAATCAAATGGATGCCTCAAATTATTTGTCaaagtga
aaaaagatgaacaagaaaaatcaaccaatgatgGCAAAGGAAAAGAGCAC
CCTGGTGTAGTTTGTGATGGTTGCGATTCCAAGATTCAAGGAATTCGATT
CAAGTGTActacttgttttgattttgatttgtgCTCCAGCTGTGAATCAA
AGAACACACATCCAGCGAACCACGAATTGTTGGTTATCAAATCACCACGA
GAATTTGGTGGCCGTCCAAGACATCCTAGATTTGGTCCAAGAGGTCACCA
ACGAGGCCCTTTTAGTGGCCCATTTGGACCATGGAGAGGCCCAGGAATGT
TTTGTCGTCGATCACCTTTTGGTGGGTTTGCTTACTCGTGTGGTCCAGCT
CAACGAAAAAGATGTGGCGAGgaagaaaaaccccaagaacCTGAAGCCAA
AAGATCATGCTCCCAAAACTCAGCCGATGAGAAGTCAATTGGAGAAGCTG
TTGCAAATTTAGCTGGCTGTTTTGGATTGGATCCCGAAGTTGCCAAGTGC
TACTTCTTTTCTTTCTCTGATGACTTGAAGGAGCAGTGTGAAGAAAGGAA
ACAACAAAACAGTGAAAAATGTGCCGATGAGAAAAGTAGCGATCAACAAG
AGCAACAAGATTTCGCCACAAACTTGGCATCCGCTTTTGGACTACAGGAA
GAATTCGTCAGGCACTTCTTGACACCTTTCTTGTCAAGAGAAAATTCTAC
ACGTGAGGAATCAACTCAGTCAAAATCAGCAGAAACAAAAACCTCCACCA
ATGAAGCTGAATCAGCATCTTCTGAAATGGAAACAGACGTTCAACAACAA
ACAGAAGAGAAAACCGACGAACAAAACGTCGACTTCGAAGTCAATGACGA
GGACCAAAAACAAGAACCAGAAAAGGTTGAGATTTCAGACGAAGTTGATg
aagaatcaaaacaaacctcaACTGAGACATCGAGTCAAACATCTAAACCG
AAAGAAGAAAATACCGAATTCAAACATGAGCTTGAGAATATGGTGAAACA
TTTCTCAGAGCAATTTGGCATTCCAAATGAAACACAGCAAAATATACAAG
GAGGCTTGGAAACATTGTTGCAGGGAATGTTCAACTTCCAACAACCAAGT
CAATCATCTACTTCAAATACTTCAAATAACAAGGATGACGAAGAGCCACG
AAAACCAGATGAGTTTGTTTTCGTTGATAAAACAAATGAAGAACCACAAC
TTACAGAAGAAGAACGATACCAAAAGAATCTGAATAAAGCGTTGGACAAA
ATGTTTGCCATGGGATTCGACAATGATGGTGGATGGCTTTCACAGTTGTT
GGTCTCCAAAGACTTGAGCATCGATCGTGTCCTTGAAGCATTAAATCCGT
CTTGTTAAGAAACCACGAAATGAAACCAAGTCGATTATTGTATTGTAATG
TTGAATATTAATCCTTTATTGTTTGgtaatatctttttgttttgtgctAT
AAAACATGAAACATTGTTATTGTCAACAATAATAAAATAAGTTGATATAG
CTGAGTGTTGTATAAGCGTCCAACGAATAATCCAGGGAAAATAACGACAT
TCAGTCTTTTTGAGAAGGAATTTATCATTTGTGTTTATGGGTATCTGAAG
CTAAATAGAGGagatttaaatcaaaattatccACTAAGGTGATTTTGTTT
CAGTAAGGGGTTAAAATGTTATTGTCAGAGTTTTGTATCCATATATTCAT
TTAgtattgatttctttttgtttttatcataattttagtatataataata
tcataattaataattttgtcattttttacaaaataatactATGTTACCTT
ATTTACAGTTTAAatatatctttttaaatcttgtATTGTAATAAAAAAA Run BLAST on NCBI protein sequence of TCONS_00069417-protein >TCONS_00069417-protein ID=TCONS_00069417-protein|Name=TCONS_00069417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MSSNGYQVKVYYIENQVTKEIRKFTIETDVASNFDYLGAKIRRVFPSLLR
KDFEIYWKDTDGDYLTISSNDELICAWDSIFESNGCLKLFVKVKKDEQEK
STNDGKGKEHPGVVCDGCDSKIQGIRFKCTTCFDFDLCSSCESKNTHPAN
HELLVIKSPREFGGRPRHPRFGPRGHQRGPFSGPFGPWRGPGMFCRRSPF
GGFAYSCGPAQRKRCGEEEKPQEPEAKRSCSQNSADEKSIGEAVANLAGC
FGLDPEVAKCYFFSFSDDLKEQCEERKQQNSEKCADEKSSDQQEQQDFAT
NLASAFGLQEEFVRHFLTPFLSRENSTREESTQSKSAETKTSTNEAESAS
SEMETDVQQQTEEKTDEQNVDFEVNDEDQKQEPEKVEISDEVDEESKQTS
TETSSQTSKPKEENTEFKHELENMVKHFSEQFGIPNETQQNIQGGLETLL
QGMFNFQQPSQSSTSNTSNNKDDEEPRKPDEFVFVDKTNEEPQLTEEERY
QKNLNKALDKMFAMGFDNDGGWLSQLLVSKDLSIDRVLEALNPSC Run BLAST on NCBI transcript from alignment at scaffold_5:181522..184354+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069417 ID=TCONS_00069417|Name=TCONS_00069417|organism=Clytia hemisphaerica|type=transcript|length=2833bp|location=Sequence derived from alignment at scaffold_5:181522..184354+ (Clytia hemisphaerica)
CGGATAGAAATGTATGAGAAAGTGCCGCCTGATGGATCGAAATGATGTTT
TCGGTACCGTAGAAAACGCAGATCAATTTTTCCTTGGCGCTCCcctggta
tatagaatttaaaggtacatgcacacgatagcaaaactgcttcgctcatg
tatattcgcttcgcaaaaatatatataagaGGCTGTGCTTCCAATCTCAA
ACCAAACTCAACAAGCAGATAGATAGCAGTTACTCAAAGTGAAGAAGCAA
cgcaagaaataaaaaataatcaaattcacaTCAAATCATCTGAAGAATCA
ACTAGACAAACAAAATCAAGATGAGTTCAAATGGATATCAAGTGAAAGTT
TACTACATCGAAAATCAAGTCACCAAAGAGATCAGAAAGTTTACCATCGA
GACTGACGTCGCCTCAAACTTTGATTATCTCGGAGCAAAAATCAGACGAG
TTTTTCCAAGTTTACTGAGAAAAGATTTCGAGATTTACTGGAAAGGTAAG
CAGAGTTAATATTACTTGTTTTGACCATCTAATATTCGTTTTAAAATTGG
TTTATATTGATTATTTTTCGGACAAATTAAAGCAAGAGTACATTAAAAAT
TCAAAGTTCGAAAAAGTCGTATAAATTTGGAGAGCTCTAATATGCGGCTC
TAATGATACCCTACACAAAATCACTCGTTTTGAAATGAGTGACCGAGGAA
CGAGCAAGATTTCTAAATCACATCTTTTTCCTTTAGATACTGATGGTGAT
TATTTGACGATTTCATCAAATGACGAACTGATTTGTGCATGGGATTCAAT
CTTCGAATCAAATGGATGCCTCAAATTATTTGTCaaagtgaaaaaagatg
aacaagaaaaatcaaccaatgatgGCAAAGGAAAAGAGCACCCTGGTGTA
GTTTGTGATGGTTGCGATTCCAAGATTCAAGGAATTCGATTCAAGTGTAc
tacttgttttgattttgatttgtgCTCCAGCTGTGAATCAAAGAACACAC
ATCCAGCGAACCACGAATTGTTGGTTATCAAATCACCACGAGAATTTGGT
GGCCGTCCAAGACATCCTAGATTTGGTCCAAGAGGTCACCAACGAGGCCC
TTTTAGTGGCCCATTTGGACCATGGAGAGGCCCAGGAATGTTTTGTCGTC
GATCACCTTTTGGTGGGTTTGCTTACTCGTGTGGTCCAGCTCAACGAAAA
AGATGTGGCGAGgaagaaaaaccccaagaacCTGAAGCCAAAAGATCATG
CTCCCAAAACTCAGCCGATGAGAAGTCAATTGGAGAAGCTGTTGCAAATT
TAGCTGGCTGTTTTGGATTGGATCCCGAAGTTGCCAAGTGCTACTTCTTT
TCTTTCTCTGATGACTTGAAGGAGCAGTGTGAAGAAAGGAAACAACAAAA
CAGTGAAAAATGTGCCGATGAGAAAAGTAGCGATCAACAAGAGCAACAAG
ATTTCGCCACAAACTTGGCATCCGCTTTTGGACTACAGGAAGAATTCGTC
AGGCACTTCTTGACACCTTTCTTGTCAAGAGAAAATTCTACACGTGAGGA
ATCAACTCAGTCAAAATCAGCAGAAACAAAAACCTCCACCAATGAAGCTG
AATCAGCATCTTCTGAAATGGAAACAGACGTTCAACAACAAACAGAAGAG
AAAACCGACGAACAAAACGTCGACTTCGAAGTCAATGACGAGGACCAAAA
ACAAGAACCAGAAAAGGTTGAGATTTCAGACGAAGTTGATgaagaatcaa
aacaaacctcaACTGAGACATCGAGTCAAACATCTAAACCGAAAGAAGAA
AATACCGAATTCAAACATGAGCTTGAGAATATGGTGAAACATTTCTCAGA
GCAATTTGGCATTCCAAATGAAACACAGCAAAATATACAAGGAGGCTTGG
AAACATTGTTGCAGGGAATGTTCAACTTCCAACAACCAAGTCAATCATCT
ACTTCAAATACTTCAAATAACAAGGTAAGTTATTTTTTTCGCTCCTCAAG
AAAAAGTtgtcttcaaaatttaaaaaacggGAATTATTTTCTTAAATCGA
AATTGAACACCATCGCCCCTTTGAATCATGCAAAACTTAACACTGTTTAA
AATTCTTATCATTTTAGGATGACGAAGAGCCACGAAAACCAGATGAGTTT
GTTTTCGTTGATAAAACAAATGAAGAACCACAACTTACAGAAGAAGAACG
ATACCAAAAGAATCTGAATAAAGCGTTGGACAAAATGTTTGCCATGGGAT
TCGACAATGATGGTGGATGGCTTTCACAGTTGTTGGTCTCCAAAGACTTG
AGCATCGATCGTGTCCTTGAAGCATTAAATCCGTCTTGTTAAGAAACCAC
GAAATGAAACCAAGTCGATTATTGTATTGTAATGTTGAATATTAATCCTT
TATTGTTTGgtaatatctttttgttttgtgctATAAAACATGAAACATTG
TTATTGTCAACAATAATAAAATAAGTTGATATAGCTGAGTGTTGTATAAG
CGTCCAACGAATAATCCAGGGAAAATAACGACATTCAGTCTTTTTGAGAA
GGAATTTATCATTTGTGTTTATGGGTATCTGAAGCTAAATAGAGGagatt
taaatcaaaattatccACTAAGGTGATTTTGTTTCAGTAAGGGGTTAAAA
TGTTATTGTCAGAGTTTTGTATCCATATATTCATTTAgtattgatttctt
tttgtttttatcataattttagtatataataatatcataattaataattt
tgtcattttttacaaaataatactATGTTACCTTATTTACAGTTTAAata
tatctttttaaatcttgtATTGTAATAAAAAAA Coding sequence (CDS) from alignment at scaffold_5:181522..184354+ >TCONS_00069417 ID=TCONS_00069417|Name=TCONS_00069417|organism=Clytia hemisphaerica|type=CDS|length=4914bp|location=Sequence derived from alignment at scaffold_5:181522..184354+ (Clytia hemisphaerica)
ATGAGTTCAAATGGATATCAAGTGAAAGTTTACTACATCGAAAATCAAGT
CACCAAAGAGATCAGAAAGTTTACCATCGAGACTGACGTCGCCTCAAACT
TTGATTATCTCGGAGCAAAAATCAGACGAGTTTTTCCAAGTTTACTGAGA
AAAGATTTCGAGATTTACTGGAAAGATACTGATGGTGATTATTTGACGAT
TTCATCAAATGACGAACTGATTTGTGCATGGGATTCAATCTTCGAATCAA
ATGGATGCCTCAAATTATTTGTCaaagtgaaaaaagatgaacaagaaaaa
tcaaccaatgatgGCAAAGGAAAAGAGCACCCTGGTGTAGTTTGTGATGG
TTGCGATTCCAAGATTCAAGGAATTCGATTCAAGTGTActacttgttttg
attttgatttgtgCTCCAGCTGTGAATCAAAGAACACACATCCAGCGAAC
CACGAATTGTTGGTTATCAAATCACCACGAGAATTTGGTGGCCGTCCAAG
ACATCCTAGATTTGGTCCAAGAGGTCACCAACGAGGCCCTTTTAGTGGCC
CATTTGGACCATGGAGAGGCCCAGGAATGTTTTGTCGTCGATCACCTTTT
GGTGGGTTTGCTTACTCGTGTGGTCCAGCTCAACGAAAAAGATGTGGCGA
GgaagaaaaaccccaagaacCTGAAGCCAAAAGATCATGCTCCCAAAACT
CAGCCGATGAGAAGTCAATTGGAGAAGCTGTTGCAAATTTAGCTGGCTGT
TTTGGATTGGATCCCGAAGTTGCCAAGTGCTACTTCTTTTCTTTCTCTGA
TGACTTGAAGGAGCAGTGTGAAGAAAGGAAACAACAAAACAGTGAAAAAT
GTGCCGATGAGAAAAGTAGCGATCAACAAGAGCAACAAGATTTCGCCACA
AACTTGGCATCCGCTTTTGGACTACAGGAAGAATTCGTCAGGCACTTCTT
GACACCTTTCTTGTCAAGAGAAAATTCTACACGTGAGGAATCAACTCAGT
CAAAATCAGCAGAAACAAAAACCTCCACCAATGAAGCTGAATCAGCATCT
TCTGAAATGGAAACAGACGTTCAACAACAAACAGAAGAGAAAACCGACGA
ACAAAACGTCGACTTCGAAGTCAATGACGAGGACCAAAAACAAGAACCAG
AAAAGGTTGAGATTTCAGACGAAGTTGATgaagaatcaaaacaaacctca
ACTGAGACATCGAGTCAAACATCTAAACCGAAAGAAGAAAATACCGAATT
CAAACATGAGCTTGAGAATATGGTGAAACATTTCTCAGAGCAATTTGGCA
TTCCAAATGAAACACAGCAAAATATACAAGGAGGCTTGGAAACATTGTTG
CAGGGAATGTTCAACTTCCAACAACCAAGTCAATCATCTACTTCAAATAC
TTCAAATAACAAGGATGACGAAGAGCCACGAAAACCAGATGAGTTTGTTT
TCGTTGATAAAACAAATGAAGAACCACAACTTACAGAAGAAGAACGATAC
CAAAAGAATCTGAATAAAGCGTTGGACAAAATGTTTGCCATGGGATTCGA
CAATGATGGTGGATGGCTTTCACAGTTGTTGGTCTCCAAAGACTTGAGCA
TCGATCGTGTCCTTGAAGCATTAAATCCGTCTTGTTAAATGAGTTCAAAT
GGATATCAAGTGAAAGTTTACTACATCGAAAATCAAGTCACCAAAGAGAT
CAGAAAGTTTACCATCGAGACTGACGTCGCCTCAAACTTTGATTATCTCG
GAGCAAAAATCAGACGAGTTTTTCCAAGTTTACTGAGAAAAGATTTCGAG
ATTTACTGGAAAGATACTGATGGTGATTATTTGACGATTTCATCAAATGA
CGAACTGATTTGTGCATGGGATTCAATCTTCGAATCAAATGGATGCCTCA
AATTATTTGTCaaagtgaaaaaagatgaacaagaaaaatcaaccaatgat
gGCAAAGGAAAAGAGCACCCTGGTGTAGTTTGTGATGGTTGCGATTCCAA
GATTCAAGGAATTCGATTCAAGTGTActacttgttttgattttgatttgt
gCTCCAGCTGTGAATCAAAGAACACACATCCAGCGAACCACGAATTGTTG
GTTATCAAATCACCACGAGAATTTGGTGGCCGTCCAAGACATCCTAGATT
TGGTCCAAGAGGTCACCAACGAGGCCCTTTTAGTGGCCCATTTGGACCAT
GGAGAGGCCCAGGAATGTTTTGTCGTCGATCACCTTTTGGTGGGTTTGCT
TACTCGTGTGGTCCAGCTCAACGAAAAAGATGTGGCGAGgaagaaaaacc
ccaagaacCTGAAGCCAAAAGATCATGCTCCCAAAACTCAGCCGATGAGA
AGTCAATTGGAGAAGCTGTTGCAAATTTAGCTGGCTGTTTTGGATTGGAT
CCCGAAGTTGCCAAGTGCTACTTCTTTTCTTTCTCTGATGACTTGAAGGA
GCAGTGTGAAGAAAGGAAACAACAAAACAGTGAAAAATGTGCCGATGAGA
AAAGTAGCGATCAACAAGAGCAACAAGATTTCGCCACAAACTTGGCATCC
GCTTTTGGACTACAGGAAGAATTCGTCAGGCACTTCTTGACACCTTTCTT
GTCAAGAGAAAATTCTACACGTGAGGAATCAACTCAGTCAAAATCAGCAG
AAACAAAAACCTCCACCAATGAAGCTGAATCAGCATCTTCTGAAATGGAA
ACAGACGTTCAACAACAAACAGAAGAGAAAACCGACGAACAAAACGTCGA
CTTCGAAGTCAATGACGAGGACCAAAAACAAGAACCAGAAAAGGTTGAGA
TTTCAGACGAAGTTGATgaagaatcaaaacaaacctcaACTGAGACATCG
AGTCAAACATCTAAACCGAAAGAAGAAAATACCGAATTCAAACATGAGCT
TGAGAATATGGTGAAACATTTCTCAGAGCAATTTGGCATTCCAAATGAAA
CACAGCAAAATATACAAGGAGGCTTGGAAACATTGTTGCAGGGAATGTTC
AACTTCCAACAACCAAGTCAATCATCTACTTCAAATACTTCAAATAACAA
GGATGACGAAGAGCCACGAAAACCAGATGAGTTTGTTTTCGTTGATAAAA
CAAATGAAGAACCACAACTTACAGAAGAAGAACGATACCAAAAGAATCTG
AATAAAGCGTTGGACAAAATGTTTGCCATGGGATTCGACAATGATGGTGG
ATGGCTTTCACAGTTGTTGGTCTCCAAAGACTTGAGCATCGATCGTGTCC
TTGAAGCATTAAATCCGTCTTGTTAAATGAGTTCAAATGGATATCAAGTG
AAAGTTTACTACATCGAAAATCAAGTCACCAAAGAGATCAGAAAGTTTAC
CATCGAGACTGACGTCGCCTCAAACTTTGATTATCTCGGAGCAAAAATCA
GACGAGTTTTTCCAAGTTTACTGAGAAAAGATTTCGAGATTTACTGGAAA
GATACTGATGGTGATTATTTGACGATTTCATCAAATGACGAACTGATTTG
TGCATGGGATTCAATCTTCGAATCAAATGGATGCCTCAAATTATTTGTCa
aagtgaaaaaagatgaacaagaaaaatcaaccaatgatgGCAAAGGAAAA
GAGCACCCTGGTGTAGTTTGTGATGGTTGCGATTCCAAGATTCAAGGAAT
TCGATTCAAGTGTActacttgttttgattttgatttgtgCTCCAGCTGTG
AATCAAAGAACACACATCCAGCGAACCACGAATTGTTGGTTATCAAATCA
CCACGAGAATTTGGTGGCCGTCCAAGACATCCTAGATTTGGTCCAAGAGG
TCACCAACGAGGCCCTTTTAGTGGCCCATTTGGACCATGGAGAGGCCCAG
GAATGTTTTGTCGTCGATCACCTTTTGGTGGGTTTGCTTACTCGTGTGGT
CCAGCTCAACGAAAAAGATGTGGCGAGgaagaaaaaccccaagaacCTGA
AGCCAAAAGATCATGCTCCCAAAACTCAGCCGATGAGAAGTCAATTGGAG
AAGCTGTTGCAAATTTAGCTGGCTGTTTTGGATTGGATCCCGAAGTTGCC
AAGTGCTACTTCTTTTCTTTCTCTGATGACTTGAAGGAGCAGTGTGAAGA
AAGGAAACAACAAAACAGTGAAAAATGTGCCGATGAGAAAAGTAGCGATC
AACAAGAGCAACAAGATTTCGCCACAAACTTGGCATCCGCTTTTGGACTA
CAGGAAGAATTCGTCAGGCACTTCTTGACACCTTTCTTGTCAAGAGAAAA
TTCTACACGTGAGGAATCAACTCAGTCAAAATCAGCAGAAACAAAAACCT
CCACCAATGAAGCTGAATCAGCATCTTCTGAAATGGAAACAGACGTTCAA
CAACAAACAGAAGAGAAAACCGACGAACAAAACGTCGACTTCGAAGTCAA
TGACGAGGACCAAAAACAAGAACCAGAAAAGGTTGAGATTTCAGACGAAG
TTGATgaagaatcaaaacaaacctcaACTGAGACATCGAGTCAAACATCT
AAACCGAAAGAAGAAAATACCGAATTCAAACATGAGCTTGAGAATATGGT
GAAACATTTCTCAGAGCAATTTGGCATTCCAAATGAAACACAGCAAAATA
TACAAGGAGGCTTGGAAACATTGTTGCAGGGAATGTTCAACTTCCAACAA
CCAAGTCAATCATCTACTTCAAATACTTCAAATAACAAGGATGACGAAGA
GCCACGAAAACCAGATGAGTTTGTTTTCGTTGATAAAACAAATGAAGAAC
CACAACTTACAGAAGAAGAACGATACCAAAAGAATCTGAATAAAGCGTTG
GACAAAATGTTTGCCATGGGATTCGACAATGATGGTGGATGGCTTTCACA
GTTGTTGGTCTCCAAAGACTTGAGCATCGATCGTGTCCTTGAAGCATTAA
ATCCGTCTTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069417-exon-scaffold_5-1491911889:181522..182016 | TCONS_00069417-exon-scaffold_5-1491911889:181522..182016 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1510915933:181522..182016 | TCONS_00069417-exon-scaffold_5-1510915933:181522..182016 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1575043694:181522..182016 | TCONS_00069417-exon-scaffold_5-1575043694:181522..182016 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1491911889:182258..183495 | TCONS_00069417-exon-scaffold_5-1491911889:182258..183495 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1510915933:182258..183495 | TCONS_00069417-exon-scaffold_5-1510915933:182258..183495 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1575043694:182258..183495 | TCONS_00069417-exon-scaffold_5-1575043694:182258..183495 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1491911889:183639..184354 | TCONS_00069417-exon-scaffold_5-1491911889:183639..184354 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1510915933:183639..184354 | TCONS_00069417-exon-scaffold_5-1510915933:183639..184354 | Clytia hemisphaerica | exon |
| TCONS_00069417-exon-scaffold_5-1575043694:183639..184354 | TCONS_00069417-exon-scaffold_5-1575043694:183639..184354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:181522..184354 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00069417 vs. Swiss-Prot (Human)
Match: SQSTM (Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.538e-18 Identity = 75/272 (27.57%), Postives = 117/272 (43.01%), Query Frame = 3
Query: 342 VKVYYIENQ-VTKEIRKFTI-----------ETDVASNFDYLGAKIRRVFPSLLRKDFEIYWKDTDGDYLTISSNDELICAWDSIFESNGCLKLFVKVKK----DEQEKSTNDG-KGKEHPGVVCDGCDSKIQGIRFKCTTCFDFDLCSSCESKNTHPANHELLVIKSXXXXXXXXXXXXXXXXXXXXXXXSGPFGPWRG-----PGMFCRRSPFGGFAYSCGPAQRKRCGEEEKPQEPEAKRSCSQNSADEKSIGEAVANLAGCFGLDPEV 1091
VK Y + + +EIR+F+ + L +++ +FP+L F+ +++D DGD + SS++EL A + + ++++K KK D + + + HP V+CDGC+ + G R+KC+ C D+DLCS CE K H H L SP R + G FG W G PG + R P G A GP G E P S N K++GE+VA G++ ++
Sbjct: 6 VKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYV--KDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLH-RGHTKLAFPSPFGHLSEGFSHSRWLRKVKH----GHFG-WPGWEMGPPGNWSPRPPRAGEARP-GPTAESASGPSEDP---------SVNFL--KNVGESVAAALSPLGIEVDI 257
The following BLAST results are available for this feature:
|
