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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069411 ID=TCONS_00069411|Name=TCONS_00069411|organism=Clytia hemisphaerica|type=transcript|length=2818bpRun BLAST on NCBI protein sequence of TCONS_00069411-protein >TCONS_00069411-protein ID=TCONS_00069411-protein|Name=TCONS_00069411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp IINYYCFFFSKISKKEITKQWLVIFKKLFSSFHPLMCDFGALTLQEEQFCRun BLAST on NCBI transcript from alignment at scaffold_5:74656..84877+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069411 ID=TCONS_00069411|Name=TCONS_00069411|organism=Clytia hemisphaerica|type=transcript|length=10222bp|location=Sequence derived from alignment at scaffold_5:74656..84877+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_5:74656..84877+ >TCONS_00069411 ID=TCONS_00069411|Name=TCONS_00069411|organism=Clytia hemisphaerica|type=CDS|length=17040bp|location=Sequence derived from alignment at scaffold_5:74656..84877+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069411 vs. Swiss-Prot (Human)
Match: R3HCL (Coiled-coil domain-containing protein R3HCC1L OS=Homo sapiens GN=R3HCC1L PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 2.621e-22 Identity = 75/217 (34.56%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 1522 DDWDANWTEDGECLSEDMKKE-----------LSMLTGIDKPNIENAEGI-----DYLNFTPTKNIELDQGEFGHIVEIFDFSPYLKNQDIFNAMNSAGIKDYNLTWVDDTHALAVFGSQSAAHSAIKQYVPVLQMRQVVNGSRASKSKARDLKEVLLPFKKRPESTGMVARNLVAGALGIRTNVSKEQRQXXXXXXXXXXXXXXXXXQDQKDVWEN 2124
+ W++ + +DG+CL + +E S L+G N ++ E I DY N +I+L EF H++EI+DF +D+ S K +++ WVDDTHAL VF S A A+ ++++R + +RA+K+KAR E L P K+RPE++ +AR LV ALG+R+ SK +R+ E + L+EARE++R + + ++D+WE
Sbjct: 575 ESWESMFNDDGDCLDPRLLQEGILMHIKPENHCSELSG----NTKSRESIQEPRSDYYNHE-VPDIDLSDCEFPHVIEIYDFPQEFHTEDLLRVFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLSQATRAAKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLQEARERKRLEAKQREDIWEG 786 The following BLAST results are available for this feature:
BLAST of TCONS_00069411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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