TCONS_00069406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069406
Unique NameTCONS_00069406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069406 ID=TCONS_00069406|Name=TCONS_00069406|organism=Clytia hemisphaerica|type=transcript|length=402bp
CGAAgacagaaaataacaacaaagacCATTTTGACATCACTCTTTGGAAA
TGATACTCTAGCAAATCAATATGAGGCTTGCAAGTTGAAAGGTAACAAAG
AGGACTTGAAAGACTTAGTAGCTCAAATCCAGATCAAATTGACTCTTCTT
TGGGATGATTCTAAAGAAAAACTCAGAACCATGGAGATGGATACTATCAA
ATCTGATAGCACTTACTTGTTAAGACCAACAGATGATAAAGACTACTTGG
TGGTGCGcaatattttgtcactgatcAAAAAGCTAGAAGACAAGTTTAAT
CTAAAGCTAGAAGAAAAGTTTAATCTAAATCTTAAATAGGACtggcaaat
attttttaattcatttaaaAGTAAGCTCTTTTTCATCCAAAATGTATCAT
GT
Run BLAST on NCBI

protein sequence of TCONS_00069406-protein

>TCONS_00069406-protein ID=TCONS_00069406-protein|Name=TCONS_00069406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
RRQKITTKTILTSLFGNDTLANQYEACKLKGNKEDLKDLVAQIQIKLTLL
WDDSKEKLRTMEMDTIKSDSTYLLRPTDDKDYLVVRNILSLIKKLEDKFN
LKLEEKFNLNLK
Run BLAST on NCBI

transcript from alignment at scaffold_499:8149..8550

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069406 ID=TCONS_00069406|Name=TCONS_00069406|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at scaffold_499:8149..8550 (Clytia hemisphaerica)
ACATGATACATTTTGGATGAAAAAGAGCTTACTtttaaatgaattaaaaa
atatttgccaGTCCTATTTAAGATTTAGATTAAACTTTTCTTCTAGCTTT
AGATTAAACTTGTCTTCTAGCTTTTTgatcagtgacaaaatattgCGCAC
CACCAAGTAGTCTTTATCATCTGTTGGTCTTAACAAGTAAGTGCTATCAG
ATTTGATAGTATCCATCTCCATGGTTCTGAGTTTTTCTTTAGAATCATCC
CAAAGAAGAGTCAATTTGATCTGGATTTGAGCTACTAAGTCTTTCAAGTC
CTCTTTGTTACCTTTCAACTTGCAAGCCTCATATTGATTTGCTAGAGTAT
CATTTCCAAAGAGTGATGTCAAAATGgtctttgttgttattttctgtcTT
CG

Coding sequence (CDS) from alignment at scaffold_499:8149..8550

>TCONS_00069406 ID=TCONS_00069406|Name=TCONS_00069406|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_499:8149..8550 (Clytia hemisphaerica)
CTATTTAAGATTTAGATTAAACTTTTCTTCTAGCTTTAGATTAAACTTGT
CTTCTAGCTTTTTgatcagtgacaaaatattgCGCACCACCAAGTAGTCT
TTATCATCTGTTGGTCTTAACAAGTAAGTGCTATCAGATTTGATAGTATC
CATCTCCATGGTTCTGAGTTTTTCTTTAGAATCATCCCAAAGAAGAGTCA
ATTTGATCTGGATTTGAGCTACTAAGTCTTTCAAGTCCTCTTTGTTACCT
TTCAACTTGCAAGCCTCATATTGATTTGCTAGAGTATCATTTCCAAAGAG
TGATGTCAAAATGgtctttgttgttattttctgtcTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043256XLOC_043256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069406-exon-scaffold_499-1491911889:8149..8550TCONS_00069406-exon-scaffold_499-1491911889:8149..8550Clytia hemisphaericaexon
TCONS_00069406-exon-scaffold_499-1510915933:8149..8550TCONS_00069406-exon-scaffold_499-1510915933:8149..8550Clytia hemisphaericaexon
TCONS_00069406-exon-scaffold_499-1575043694:8149..8550TCONS_00069406-exon-scaffold_499-1575043694:8149..8550Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069406-proteinTCONS_00069406-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_499supercontigscaffold_499:8149..8550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.271726	2.11496	0.750691	0	0	2.36333	1.67948	0	0.901053	0	0	0.438479	0	0.25893	0.528131	0.413985	0.188498	0.195407	0	0	0.260071	0	0.191618	0	0.116204	0.625261	0	0	0.44238
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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