TCONS_00069403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069403
Unique NameTCONS_00069403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069403 ID=TCONS_00069403|Name=TCONS_00069403|organism=Clytia hemisphaerica|type=transcript|length=1539bp
ttttgatttttttttgttattgcaGATTTAACTCAATGTTCGGATCAGAG
ATTGATATTAACAAATATCGTAGAAACTTTGTCAACATCAAACAGAAAGT
ATTTGATCTTGGAAGAAAATCAGCTGCTGATAAAGCTATAGTTTTAGAAA
AGTTTAGTGTTTTGGAGTGGGATAAGCTTTGTGATGGGAAAAAGAAAAGG
CATACAATCTTCAATTGCAAACAAGGCTGTATACAAGATGACGTATTGAG
ATCTGCGCTGAGAACCTTTCCCATTAAGAGTGCGGCTGTAAGGGCAAGAG
CCGAAGAAGCTGGTCTTTTTAGGCCCTCAAAGGAGGAAATACAGACAGAA
ACCAGTAAGATTGTGAAGCAGCTGAATTCCAAGTACAGGAAAGATTATGG
TACCACCTTTGATAGCCAGTACAGAGTTTGTAAGGGACAGAAAACGAAAG
GAGAGGTATATTTTAAATGGAGCAGTTATAATTGTATTTGTTTGTCAGAA
TTTCGAAGTAAATATTTCAGTTCAAAATATccaaataccttaaaggaaga
aattttatgGACTTGgccaaaaatctgaaaagttCCTGTCATAATTGTTT
AGAAAAGATCTGtcaattttcaattcatttcGTCCATTCGCAAAATTGAA
TTCCTACCAAAAAAAACTTTGCCAGACTtttatttcacatttttttcttt
aaggtAATCAATTGCCAGTTGTTCAACCTTCCAATGTTatttaaggaaaa
aaaatctcacaGGCTTAGATTAGACCTAGAAAAAGACTTGTTGTGAATGC
AAACTACAGctaaaatatgaatgaaacTTCCAAAAAAGGCAAAGGCTTTA
GCTATTATAAGTTTTTGTTTtcagaaagaaattattttttttaatattca
acttttttcttttttcaagacTCGCAAAACCATTATCAAAGAAGTTGTTA
AAGACATTCAAAAGCAGAATAATGAAACCATTGTGACAAGAGTTCTTGGT
ACACGGACATCGTATGCGACCCATGATGAAAATCGCAAACTAACGTCACA
CGAGACCTATCAAAGTTGCTTGGACAGAAcaaccaaacaaaaaaaacgtt
CCGTGTTGAATCATGCTGGAAACATTGCTAACTATGTATTCGATGAAAAA
GTATTTGATAAGGTTAAAAGTTTTCCTCCAAGAACAACAATCAATTACAA
AAAGCTTGCTGAAGACTATAACTTGAAACACCGCATCACCAATAAAGTGC
CTGGACATCGTGGACAAATCATGGAAGCTATTTTGGACCAATCAGACATT
GACATGAGCcaatttgaaaaagccttaaatagtGGTCCAAGGTTCAGACG
GGCAAAGAGAAAGATACTTGATACAAACATAGCAGTGCCCTCAGATGAAT
CGAGTGAACAAATTCAAAATCGGATGCGTTCTTATATTGAATCTGGAGAA
TACAAGGCTGGTGAAATGATCGTTCCACAACAATACGAACGCCTAATAAT
CAAAGATGGTGTGGTTACAACGGAAGTAATTGAAATCTC
Run BLAST on NCBI

transcript from alignment at scaffold_499:14541..17126-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069403 ID=TCONS_00069403|Name=TCONS_00069403|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at scaffold_499:14541..17126- (Clytia hemisphaerica)
TTTTGATTTTTTTTTGTTATTGCAGATTTAACTCAATGTTCGGATCAGAG
ATTGATATTAACAAATATCGTAGAAACTTTGTCAACATCAAACAGAAAGT
ATTTGATCTTGGAAGAAAATCAGCTGCTGATAAAGCTATAGTTTTAGAAA
AGTTTAGTGTTTTGGAGTGGGATAAGCTTTGTGATGGGAAAAAGAAAAGG
CATACAATCTTCAATTGCAAACAAGGCTGTATACAAGATGACGTATTGAG
ATCTGCGCTGAGAACCTTTCCCATTAAGAGTGCGGCTGTAAGGGCAAGAG
CCGAAGAAGCTGGTCTTTTTAGGCCCTCAAAGGAGGAAATACAGACAGAA
ACCAGTAAGATTGTGAAGCAGCTGAATTCCAAGTACAGGAAAGATTATGG
TACCACCTTTGATAGCCAGTACAGAGTTTGTAAGGGACAGAAAACGAAAG
GAGAGGTATATTTTAAATGGAGCAGTTATAATTGTATTTGTTTGTCAGAA
TTTCGAAGTAAATATTTCAGTTCAAAATATCCAAATACCTTAAAGGAAGA
AATTTTATGGACTTGGCCAAAAATCTGAAAAGTTCCTGTCATAATTGTTT
AGAAAAGATCTGTCAATTTTCAATTCATTTCGTCCATTCGCAAAATTGAA
TTCCTACCAAAAAAAACTTTGCCAGACTTTTATTTCACATTTTTTTCTTT
AAGGTAATCAATTGCCAGTTGTTCAACCTTCCAATGTTATTTAAGGAAAA
AAAATCTCACAGGCTTAGATTAGACCTAGAAAAAGACTTGTTGTGAATGC
AAACTACAGCTAAAATATGAATGAAACTTCCAAAAAAGGCAAAGGCTTTA
GCTATTATAAGTTTTTGTTTTCAGAAAGAAATTATTTTTTTTAATATTCA
ACTTTTTTCTTTTTTCAAGACTCGCAAAACCATTATCAAAGAAGTTGTTA
AAGACATTCAAAAGCAGAATAATGAAACCATTGTGACAAGGTATACTTTT
CTCATCCTGATTATTAACAGGGTATCTGATTACTTGAAAAAGAGGATACC
AAGTGTTGGCTAAGAAATACCAATATGTTTATTAAACTATTAATTTTTAT
CATGCCAGTGTTTTGTTATCCTTTGAAGTTAACAATAAATTTTGAAGAAA
TCTTTGTTATTCTCTTTGTAGAGTTCTTGGTACACGGACATCGTATGCGA
CCCATGATGAAAATCGCAAACTAACGTCACACGAGACCTATCAAAGTTGC
TTGGACAGAACAACCAAACAAAAAAAACGTTCCGTGTTGAATCATGCTGG
AAACATTGCTAACTATGTATTCGATGAAAAAGTATTTGATAAGGTATATG
CTCAGTATTTCACTCTTTCCGGATATTACAGTTCACATTTTTTGATATAA
TTCAATTTTCACTGTTATAGATTTTCTGTAATCTTCAAAAATGTTTTTTT
TTGCCTTTTCAGGTTAAAAGTTTTCCTCCAAGAACAACAATCAATTACAA
AAAGCTTGCTGAAGACTATAACTTGAAACACCGCATCACCAATAAAGTGC
CTGGACATCGTGGACAAATCATGGAAGCTATTTTGGACCAATCAGACATT
GACATGAGCCAATTTGAAAAAGCCTTAAATAGTGGTCCAAGGTTCAGACG
GGCAAAGAGAAAGTATGTTTTCCTCATTTTTTATGTCTTGTTACTGTAAA
GCTTTTGGCTAGTGATTGNAAGTTCCATTAATAGTAGGTAGTTCATTCAA
CTTGCAAACCAGTGCAGTGGTGGCTCGAGATTTCCATGTGAAAATTCCTC
CCGCCTGTAAAGAAAAATGTAAACATAACTACAGCTACGGCAACCGAAAA
TGGTCTCGAAAACGAACCCGCGTAACAAAACCGNAACTTTGATCTATTTG
GTGGAACATACAGTGACTTTTGGTGCAAACACATATTCTACAGAAACTTC
TTTTACTTTTAAAGGTGATAGATATAACATTTGTGGACTAAATAAACCTG
TGTGGGGATAATTCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCATCATCAGACTCAAAACTGTTGAAATATTATCAAA
TTTAGACATTTCTAAGGATGAGGTATTGTCTGACATTGACATTATAGAAA
ATTATTTTCTTCTAATGTTTCAGGATACTTGATACAAACATAGCAGTGCC
CTCAGATGAATCGAGTGAACAAATTCAAAATNTTATTTTCTTCTAATGTT
TCAGGATACTTGATACAAACATAGCAGTGCCCTCAGATGAATCGAGTGAA
CAAATTCAAAATCGGATGCGTTCTTATATTGAATCTGTGAGTTTTAGTTT
GTTATGAAAAGGAGTTACATGTTTTAAAATATTTAAACCTTCTTTTAACC
TTCTTTAACCCTTAACCCCATGCTAAGGGAATTATCAAATATATAAGCGT
TTTGCCTATAGAACTTTTTTCCCCATCTTTTCAACGCTCAGGGAGAATAC
AAGGCTGGTGAAATGATCGTTCCACAACAATACGAACGCCTAATAATCAA
AGATGGTGTGGTTACAACGGAAGTAATTGAAATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043255XLOC_043255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069403-exon-scaffold_499-1575043694:16137..17126TCONS_00069403-exon-scaffold_499-1575043694:16137..17126Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1575043694:15784..15955TCONS_00069403-exon-scaffold_499-1575043694:15784..15955Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1575043694:15465..15664TCONS_00069403-exon-scaffold_499-1575043694:15465..15664Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1575043694:14791..14872TCONS_00069403-exon-scaffold_499-1575043694:14791..14872Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1575043694:14541..14635TCONS_00069403-exon-scaffold_499-1575043694:14541..14635Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1510915933:16137..17126TCONS_00069403-exon-scaffold_499-1510915933:16137..17126Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1510915933:15784..15955TCONS_00069403-exon-scaffold_499-1510915933:15784..15955Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1510915933:15465..15664TCONS_00069403-exon-scaffold_499-1510915933:15465..15664Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1510915933:14791..14872TCONS_00069403-exon-scaffold_499-1510915933:14791..14872Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1510915933:14541..14635TCONS_00069403-exon-scaffold_499-1510915933:14541..14635Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1491911889:16137..17126TCONS_00069403-exon-scaffold_499-1491911889:16137..17126Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1491911889:15784..15955TCONS_00069403-exon-scaffold_499-1491911889:15784..15955Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1491911889:15465..15664TCONS_00069403-exon-scaffold_499-1491911889:15465..15664Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1491911889:14791..14872TCONS_00069403-exon-scaffold_499-1491911889:14791..14872Clytia hemisphaericaexon
TCONS_00069403-exon-scaffold_499-1491911889:14541..14635TCONS_00069403-exon-scaffold_499-1491911889:14541..14635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_499supercontigscaffold_499:14541..17126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.759096	0.935038	0.724867	0.352331	0.251809	0	0.154095	0	0.101001	0.0834043	0.161902	0.0798243	0.212564	0.0551887	0.242351	0.462572	0.959748	1.1989	0.169881	0.192986	0.424911	0.339147	0.824556	0.624701	0	0	0.657392	0.126941	0.443441	0.135539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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