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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069400 ID=TCONS_00069400|Name=TCONS_00069400|organism=Clytia hemisphaerica|type=transcript|length=1151bp
tttttttcaaccagTCTTTCATTTTCATATGGAAGAGAATTTGCAGAAAC
ACTTTTGGACAAGGAAGGTCAAGATGGCGACGAAAATTTATCTGTACGGA
TTTGAACATCTACCTAATTTCACAATCCTCTTGCTTCGTATGCATAAATA
CATTGGTGATTGAAGTTGAAACATTTGGAACATTCAATTTTGTCAACTGG
CGTTTACTTGACTTGTCAGATGAATAGGATTCTTGAAGATTTGCAATTAA
AGGCAAAAGACAGCTAGAACATCATCAGGACTCTACAAAGTGATGTTTAC
TGAACAGAAATTTGGATGATCTTGCAAAGAGAAGAACAAACCTCCATCAT
TGAACAAATAACGTAAAGGTTTTTTTGATCTGCATAATCATCACGGACTT
GCATCCTGACGAAGGCGTTATCCAAGACATTCTCTGGATGGTGGTTTGAT
GTCCAAGTTGCTGCatgcttcaaaaatttgaacattTGTTCTTCCTCTTC
AACATTTGCTGATGGTAAACTCATTATTCGAAACTGATGGCAGCCCTCGA
TGAGTTCGTGCATGTACTGGCCGTGAAATTTTCTTGTCGTTCGTTTTTTG
ATCGTATCGAATGCCTCTTTGATGTAAATGATGTGCATGAAGACGAGGTT
GTACAAACGAAAAATCAACTGAGGTGATCGCTCTCTGGAATACATGATAT
CCTGGATCTCACAAAGGCTtctcaagattttgaaaaagcaGTCTTCGATC
TTACCGTTCTTTAGTGTAATCGTGAGCTCATTGAGAGCATTACGGTAATC
TCGAGCTCGCTTCAGTTGAGACCCTCTCCAAATAGCTGTCAACGTGTTGT
CAAAGGTGGTCAGCATAATGAGCAGCGCCTTCTCTTTGAAGTTCCCGACC
AACAGTCGTTGCAAACAACTCTCTGCATTTGTCATCCAGTGATGTGGTTT
TACTATACAGCACATGTTGTAAATCATCTCCTCTGTTACCATCCAATTGG
CAAAACCAGCAAAAGAATCGTCCTCCCTTTTGGTGACCTGCCTCTAGCTG
GCAAGCTGGGGCATCGCCTAGTGAAAGATTTTATTGTACTTATTTATGTA
TTACTTGTGaccatttcaaataaaaaataacttagaaaaatgttcttcaa
a Run BLAST on NCBI transcript from alignment at scaffold_499:4934..11665+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069400 ID=TCONS_00069400|Name=TCONS_00069400|organism=Clytia hemisphaerica|type=transcript|length=6732bp|location=Sequence derived from alignment at scaffold_499:4934..11665+ (Clytia hemisphaerica)
tttttttcaaccagTCTTTCATTTTCATATGGAAGAGAATTTGCAGAAAC
ACTTTTGGACAAGGAAGGTCAAGATGGCGACGAAAATTTATCTGTACGGA
TTTGAACATCTACCTAATTTCACAATCCTCTTGCTTCGTATGCATAAATA
CATTGGTGATTGAAGTTGAAACATTTGGAACATTCAATTTTGTCAACTGG
CGTTTACTTGACTTGTCAGATGAATAGGATTCTTGAAGATTTGCAATTAA
AGGCAAAAGACAGCTAGAACATCATCAGGTAAAGGCACATATTTTTTAGT
TGGTTTGTATTTTACGCTCCTATTAAGTCGATTTAGTCCTCAAAACTTAT
GGTAACTTTTGTGTCTCTTGTGTTTTTTGATAGTTGACTTTCAAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNacatcaatcgaacttcatcgaacaaagaaaactcatc
aaactaaatcgaacttatcaagaaattttcgtaaagttcgatagctgttc
aatcgggttcggtaatcgaacagctatcgttcgattttgttcgataacga
aaatcggtttgatagggttcggttgacaccgcctggtCCGATACATTCAA
TTATACAAACCAGACCAATGATAGAGATgacactttttttaaagaaagta
ataaaaattttaatctttttttttacaaattaacaaCCTAAGAGCTTGAT
aaagctccagcttgtcccatccgaTGGGATAGATATAGGATGGCCCGTGG
GCAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCCCCCCGCCCGCCAATA
CACCCTCGgaatatgaataaaaaattttgtctttgtcgatCTTGATCGAA
CCTATCGTATTCATCAAATTGCGATCGaactttaaaaaagttttcctgGT
TCAATTGGGTTCGGTactcgaacagctatcgttcaaTAAGTTCGACAACA
AGAAATGCTTGACAAATcgacaaaaaaaactttgttaCATAAtaccaggc
ggtgtcaatcaaaataatcgaacacaatcgaacacctatcgaaccggaaa
tttttcataaagttCGATGACTGTTTGATTATACTAACATACATAGTTTG
ATAAAGTTCGATCGCAGTTCGATGAATCCAATtgaggttcgatcagttcg
attagtttgatttatacTTGCCgcctaattttttatttacatcTTGGTGG
CCGCCCACGGGCCATCTAATATCTATCCCATCGgacgggacaagctggag
cttttacaagctcttttacGATTTGAAACTCATCGACCATCAATTGAACC
ctatcgaacatcaatcgaacttatcaagaaattttcgtaaagtttGATGG
CTGTTCGATCAGGTACGGTAATCGAACTGTACTTTGAAttgaactttgtc
gaacttaatcaaactttgttgtCCAAATTAATGGAACAGAGAATCTTTTG
CTgaatttgtcaaacatttcttgTTGACAAACTTTATCAAACAggttttt
ttgttgaatatgTTTAAGGTTTTGATAAACGTAACGTTATGTTGAATCTA
GACATAATTAATGGAATAGTTTGATTACCAAACCTTGTCAAACTTAatta
aacaacaaaaaatcacaaactttttaaaagtggcaaaaattgtGAGTAAT
TAGTTGTTCAATAGAACAATATGATataatcaaattttttatcgTTTCAT
TAACAGGACTCTACAAAGTGATGTTTACTGAACAGAAATTTGGATGATCT
TGCAAAGAGAAGAACAAACCTCCATCATTGAACAAATAACGTAAAGGTAA
GAACACATACTTCAAAATTAAACAATCAGGCTTTGCCTCAAATGATACAG
CCTGGGAACTCAAGTAagggaaagtcaaaaacttacaaattatttttata
aattgaGGTTTGTAATAACAACATTATGAATTGCTACATTTGAAATGATG
CagtaaaaattgtgaaaaatctaTAGGAATAGTAGTATGGAACTTACTAA
GATTTGTATAAAAATCatgaaagtaagaaaaataaaaaacctcTATGAAA
GACAATATAACTATACAGTCCTTTGTGAAATATAAATATGAAAGGACCAG
TAAATTAAAATAGATTATTTAAAAAAGGTTGAGTGAATCAGAGtgaataa
aaaatgataaatactaATAGgactaaaatgaaattttatggtctctttta
agATTATAGACCAAACTTACTGCTGTAATTCAGACTATTTGTTCATACAC
TATTGATATTAAACCACCTATATAATCctggtaaaaacagtaggaaaGTG
CTTATTTTGTTAACAACTACTcttgggtgcctaataaacgtacatgtacg
ttgaAAAATTGGTAGATTTTTCCCTGTACGTTTTTtttagcctgtacgtt
tatttattttagctttGATTTCTcgtctgtacgtttattttagcctgtac
gtttattattttcaattttatttccctcctgtacgtttattttggtctgt
acgtttatttcagcatgtacgtttattattttcaattttatttccctcct
gtacgtttattttggtctgtatgtttattaggcacccaagAGTAATCATA
TTATTAAGAATATTGACATGATACATTTTGGATGAAAAAGAGCTTACTtt
taaatgaattaaaaaatatttgccaGTCCTATTTAAGATTTAGATTAAAC
TTTTCTTCTAGCTTTAGATTAAACTTGTCTTCTAGCTTTTTgatcagtga
caaaatattgCGCACCACCAAGTAGTCTTTATCATCTGTTGGTCTTAACA
AGTAAGTGCTATCAGATTTGATAGTATCCATCTCCATGGTTCTGAGTTTT
TCTTTAGAATCATCCCAAAGAAGAGTCAATTTGATCTGGATTTGAGCTAC
TAAGTCTTTCAAGTCCTCTTTGTTACCTTTCAACTTGCAAGCCTCATATT
GATTTGCTAGAGTATCATTTCCAAAGAGTGATGTCAAAATGgtctttgtt
gttattttctgtcTTCGCAATTGTAACACTTCCCTTTTTTTGTTTCTGCT
GCCTGTGAAAAAAGAGGAACCAGTATAAACATCTGAAATCTTATAcatct
tttttttcaagaacattcaaaatctaGCCAAATATAAATTAGAACAACAA
CTAGTACATAGATTGTACTTACTACTCTCACTATCTCCGAACAAAgattt
tgatggttttggtacTTGAGGTGTAGCTATAAGcataaaaaacaaacttc
aataATTAGACAAAGTTATGAATGATATCAAATATTATCTCAAATTATAA
ACTTATTACTCACATGTAGTCATGATGGGCTTTGACGAAGGCGTTTTTGG
TATGTCATTGACTTTGGAATATGGTGCtattaaaaaataatgattaTAAT
TATTATGAATCGATTATAAGAGATAATAGAAGAGCCCTTTTGAGTTTCAA
CCTATATTGATTATCTTTATTGGCTTACCTGGCATCAAAGGACTCTGGAT
ATTAAGACCATTGAATAGAGTAGAAGGTGTTTTGTCCAAAATTGATGTAT
CCACTGACTTGTATTCTAAATAGTTATCATAAAAAGCAATATTCTCAATA
TTCAAGCTTTACAGCCCTATTAAGATTTTACAACAGTAAACTTTATTTTG
TGTGTGTTGTGTGTTGTTTGATCTGATccaaaaaaactctttttaaatAG
AATAATGATGTGAAATATTATGAAATTAATTCTTACCAAAAAGTGAAGTG
TTGAAATTCATGAGTTcgttttctccttgcattgcttcCTCGACATTGTT
TGTTGTgcctgaaaaattcaaaaaagcttttaaattccttgaaagtttga
agaacGTGGGACAGATTTTATTATGTCAGATTATGTCCATTTTTTGGCTG
ATATCAGCAGAATTGTTTTTAGTCAGTCTCACCGTCATCATCAGCAATCA
TTGTTATATCAGAATTGTTGTGTTCAATTTTGTCAAATCTATCCTCTCTG
TCTTCATGTTCCTTGGCAATTTCTTCGTCACTTTCTTCATCACACTCTTC
TTCATCACTTTCTTCAGAACACTCTTCTTCGTCACTTTCTTCAGAACTGT
CTTCTTCATCACTTTCTTCAGAACTGTCTTCTTCACCACTCTCTTCAGAA
CTGTCTTCTTCGCCTTCTTTTGAACTGTCTCTGTTGATTTTAACTGGTTC
TATCTCTGGTTCTATGGATTAAGAAACTATCATTCAACATTCAACACCTG
ACATTGGAAAGGTTTGTCTTTCAAGGTACCctcaaggaaaatattttcat
aaagaaAGTAAAGTGGAACATAAAGAAAGATATTAAAATTAGGCATAAAA
ATTACCATCAAACACAATTGTCACTTTCCGCAATCTTGAAATTGACCCAA
TGTTGTATAATTTCCCTTCATCATTCATTACTTTATCTGCTGGTACCATG
TCGGGTTTCTCTTTAAGTAAATCATTCCATTTATCTGAAGAAAAATTAAA
CAGATTAGTGCCAACAGTCCTGTAAAATAAAGGCTGTTTCAgatgaagaa
atatttttcgttgGTAAAAGAATTTTAAGTAGATTGAGGAAATTCCTGGC
TGGGGCTAAACTTTTCATTAGGCTAATTTTCTTTTGTCcaggggtcggta
ctaaaatctcggacaaataaatatatagaaattGTCAAAAACAATGGTTT
TTATTTCGTATAAGTAGAAGTGAGATATTAGTAGTACTTGCCTTGTAATT
TGGTAACTTCATTTTTTNAGTAGAAGTGAAGTATTAGTAGTACTTGCCTT
GTAATTTGGTAACTTTATTTTTAATCGTCGATGACCTGAAGTGAGCTAGC
GGGAGGCTCAAAGGCTTAAGGTCGTGTAAGGTAATTCCATCATTGGTTTC
CGTCCATATTTCTTTAACCTCCAAGAAATCAGCGATCCTTTGTAGATGAC
CCTGCCAAGTTCTTGGGTGCTTTTTAATGAATGAAAAAGGAACCAGAGTA
GAGGGTAGTGGGTCCAATTGATCGCCTGATTTTGAACATgctgattttga
tttctttcttctttttaccAGGTTTTTTTGATCTGCATAATCATCACGGA
CTTGCATCCTGACGAAGGCGTTATCCAAGACATTCTCTGGATGGTGGTTT
GATGTCCAAGTTGCTGCatgcttcaaaaatttgaacattTGTTCTTCCTC
TTCAACATTTGCTGATGGTAAACTCATTATTCGAAACTGATGGCAGCCCT
CGATGAGTTCGTGCATGTACTGGCCGTGAAATTTTCTTGTCGTTCGTTTT
TTGATCGTATCGAATGCCTCTTTGATGTAAATGATGTGCATGAAGACGAG
GTTGTACAAACGAAAAATCAACTGAGGTGATCGCTCTCTGGAATACATGA
TATCCTGGATCTCACAAAGGCTtctcaagattttgaaaaagcaGTCTTCG
ATCTTACCGTTCTTTAGTGTAATCGTGAGCTCATTGAGAGCATTACGGTA
ATCTCGAGCTCGCTTCAGTTGAGACCCTCTCCAAATAGCTGTCAACGTGT
TGTCAAAGGTGCGTTTTTTCCTCTTATTCAAATGCCTTGGAATTTGGTCC
AACAAGTTTTCCGTGTGACCTTTGAGAGCATGCATAGGATCCAGAGGTAG
AACTTCATAATTGTATAAACCTGCCTCGGTCATCGACTTATGATTGGACC
CGGCCAACAGTGCAGGGACTCTTTGTGTGCCTTTCATCTCCTCAgcaaga
atttttctcaaatgttCAACCTTGTTTTGTGAAACAAACTCGACCTTCCT
CTGATTAAGATCTgatattattttatctttttgcAGGTGGTCAGCATAAT
GAGCAGCGCCTTCTCTTTGAAGTTCCCGACCAACAGTCGTTGCAAACAAC
TCTCTGCATTTGTCATCCAGTGATGTGGTTTTACTATACAGCACATGTTG
TAAATCATCTCCTCTGTTACCATCCAATTGGCAAAACCAGCAAAAGAATC
GTCCTCCCTTTTGGTGACCTGCCTCTAGCTGGCAAGCTGGGGCATCGCCT
AGTGAAAGATTTTATTGTACTTATTTATGTATTACTTGTGaccatttcaa
ataaaaaataacttagaaaaatgttcttcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069400-exon-scaffold_499-1491911889:4934..5211 | TCONS_00069400-exon-scaffold_499-1491911889:4934..5211 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1510915933:4934..5211 | TCONS_00069400-exon-scaffold_499-1510915933:4934..5211 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1575043694:4934..5211 | TCONS_00069400-exon-scaffold_499-1575043694:4934..5211 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1491911889:7240..7329 | TCONS_00069400-exon-scaffold_499-1491911889:7240..7329 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1510915933:7240..7329 | TCONS_00069400-exon-scaffold_499-1510915933:7240..7329 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1575043694:7240..7329 | TCONS_00069400-exon-scaffold_499-1575043694:7240..7329 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1491911889:10605..11091 | TCONS_00069400-exon-scaffold_499-1491911889:10605..11091 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1510915933:10605..11091 | TCONS_00069400-exon-scaffold_499-1510915933:10605..11091 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1575043694:10605..11091 | TCONS_00069400-exon-scaffold_499-1575043694:10605..11091 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1491911889:11370..11665 | TCONS_00069400-exon-scaffold_499-1491911889:11370..11665 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1510915933:11370..11665 | TCONS_00069400-exon-scaffold_499-1510915933:11370..11665 | Clytia hemisphaerica | exon |
| TCONS_00069400-exon-scaffold_499-1575043694:11370..11665 | TCONS_00069400-exon-scaffold_499-1575043694:11370..11665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_499 | supercontig | scaffold_499:4934..11665 + |
Blast
The following BLAST results are available for this feature:
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