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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069398 ID=TCONS_00069398|Name=TCONS_00069398|organism=Clytia hemisphaerica|type=transcript|length=1317bp
atgtggagcaagattggtcagaatgGGGAAAAGAATAACAtttttatatc
agcacaatataacaatagggagaaaCTGTCCTCATACGAAAcatgtgcct
gatatgaaagGTGAAATGGGAACACTGATGaagaaataaaacctttaagt
cgCTCAATTGGGTTGATATTTTCTCAACTTTTGACGatgcttttgaaata
ttttcgaaTTTCTTTATTTCTGTAGATATAGACTAGTGAGTTAATACCAT
TATTTGCCAACCAGAGTAGGAAAGTCACATTCTTTGCCACTTTATCTGAA
TGCCATACAATCTGCACAACGAGATAGACCGTGAATGGTAAACAACATAG
CAAGTAACAGAGCGTTAACAATAGTAAAGTCATTACAGCGTGTTTCTTAC
GTTTGAGAGATTGAAATTCTGCTCTGTTTATTACTGACAATGTTTTTCCT
GACTCCGTGGTACATGTTTTCCTTGTAGCTAATTCCTCTAAAGTCTTGTT
GGCATGTCTCTTACTTTTCGGAGATCGAAACTCTACTTTGtttattgatg
ttgatgttTTAACTGACTCGATGTTTTTAGTTTTAGAAATCTTACTGGTT
TCGAAGTTTGGGACATTCTTTAGTGAGAGGTTTCCATGTGATGACTTGTC
CTCTTCGCGTTTAATTCGATGACNGAACTCTGGGACATTCTTTAGTGAGA
GGTTTCCATGTGATGACTTGTCCTTTTCGCGTTTAAGTCGACTTTGTTGT
TTATCTTCTGTCGTATTGTTGTTCTTTAATCCAATACTTTGTGTTTGAGA
TTTTTCGTCGTCgttcaaaatggtagcttttTGCTGACGTATTACACCTA
CTCCATCGTTCAAAATGAATGATTCTTGCTGACGTATTATACCTGTTCCA
TCGTTCAAAATAGTTGATTCTTGGCCAACTACATCCCTTTGTTCCTTACT
TTCTTGCCTTTGTAGTTGAACACTCGATATAGGGGCATTATCTTTCAACG
TCAATAGCAAAGACTTACTTTGACGTTTTAAATGTACCAATGacaagaaa
ttcaacaaaatcacaaacagtaacaccaaaacaaagaatGTTGGACCAAT
AACTCTATTCACCAAATATACTCTCTCAAATGTCACTTCATTGCTAAGGG
ATGCAATAACTAACCAAGCCATTACAACATTATAGCCAGAAATTATAGTC
AATTGTACAATCAAAGATACATACACTTTCCAAGGGTCGATCACCACAAA
AGGTTTCTTTAGAGATAAGAACCTCAGAATCGATATGGTTCCAAAAGCAA
ATATCCCTAAAGCGTTG Run BLAST on NCBI protein sequence of TCONS_00069398-protein >TCONS_00069398-protein ID=TCONS_00069398-protein|Name=TCONS_00069398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
NALGIFAFGTISILRFLSLKKPFVVIDPWKVYVSLIVQLTIISGYNVVMA
WLVIASLSNEVTFERVYLVNRVIGPTFFVLVLLFVILLNFLSLVHLKRQS
KSLLLTLKDNAPISSVQLQRQESKEQRDVVGQESTILNDGTGIIRQQESF
ILNDGVGVIRQQKATILNDDEKSQTQSIGLKNNNTTEDKQQSRLKREKDK
SSHGNLSLKNVPEFXHRIKREEDKSSHGNLSLKNVPNFETSKISKTKNIE
SVKTSTSINKVEFRSPKSKRHANKTLEELATRKTCTTESGKTLSVINRAE
FQSLKRKKHAVMTLLLLTLCYLLCCLPFTVYLVVQIVWHSDKVAKNVTFL
LWLANNGINSLVYIYRNKEIRKYFKSIVKS Run BLAST on NCBI transcript from alignment at scaffold_498:527812..529128 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069398 ID=TCONS_00069398|Name=TCONS_00069398|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at scaffold_498:527812..529128 (Clytia hemisphaerica)
CAACGCTTTAGGGATATTTGCTTTTGGAACCATATCGATTCTGAGGTTCT
TATCTCTAAAGAAACCTTTTGTGGTGATCGACCCTTGGAAAGTGTATGTA
TCTTTGATTGTACAATTGACTATAATTTCTGGCTATAATGTTGTAATGGC
TTGGTTAGTTATTGCATCCCTTAGCAATGAAGTGACATTTGAGAGAGTAT
ATTTGGTGAATAGAGTTATTGGTCCAACattctttgttttggtgttactg
tttgtgattttgttgaatttcttgtCATTGGTACATTTAAAACGTCAAAG
TAAGTCTTTGCTATTGACGTTGAAAGATAATGCCCCTATATCGAGTGTTC
AACTACAAAGGCAAGAAAGTAAGGAACAAAGGGATGTAGTTGGCCAAGAA
TCAACTATTTTGAACGATGGAACAGGTATAATACGTCAGCAAGAATCATT
CATTTTGAACGATGGAGTAGGTGTAATACGTCAGCAaaaagctaccattt
tgaacGACGACGAAAAATCTCAAACACAAAGTATTGGATTAAAGAACAAC
AATACGACAGAAGATAAACAACAAAGTCGACTTAAACGCGAAAAGGACAA
GTCATCACATGGAAACCTCTCACTAAAGAATGTCCCAGAGTTCNGTCATC
GAATTAAACGCGAAGAGGACAAGTCATCACATGGAAACCTCTCACTAAAG
AATGTCCCAAACTTCGAAACCAGTAAGATTTCTAAAACTAAAAACATCGA
GTCAGTTAAaacatcaacatcaataaaCAAAGTAGAGTTTCGATCTCCGA
AAAGTAAGAGACATGCCAACAAGACTTTAGAGGAATTAGCTACAAGGAAA
ACATGTACCACGGAGTCAGGAAAAACATTGTCAGTAATAAACAGAGCAGA
ATTTCAATCTCTCAAACGTAAGAAACACGCTGTAATGACTTTACTATTGT
TAACGCTCTGTTACTTGCTATGTTGTTTACCATTCACGGTCTATCTCGTT
GTGCAGATTGTATGGCATTCAGATAAAGTGGCAAAGAATGTGACTTTCCT
ACTCTGGTTGGCAAATAATGGTATTAACTCACTAGTCTATATCTACAGAA
ATAAAGAAAttcgaaaatatttcaaaagcatCGTCAAAAGTTGAGAAAAT
ATCAACCCAATTGAGcgacttaaaggttttatttcttCATCAGTGTTCCC
ATTTCACctttcatatcaggcacatgTTTCGTATGAGGACAGtttctccc
tattgttatattgtgctgatataaaaaTGTTATTCTTTTCCCcattctga
ccaatcttgctccacat Coding sequence (CDS) from alignment at scaffold_498:527812..529128 >TCONS_00069398 ID=TCONS_00069398|Name=TCONS_00069398|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_498:527812..529128 (Clytia hemisphaerica)
AACGCTTTAGGGATATTTGCTTTTGGAACCATATCGATTCTGAGGTTCTT
ATCTCTAAAGAAACCTTTTGTGGTGATCGACCCTTGGAAAGTGTATGTAT
CTTTGATTGTACAATTGACTATAATTTCTGGCTATAATGTTGTAATGGCT
TGGTTAGTTATTGCATCCCTTAGCAATGAAGTGACATTTGAGAGAGTATA
TTTGGTGAATAGAGTTATTGGTCCAACattctttgttttggtgttactgt
ttgtgattttgttgaatttcttgtCATTGGTACATTTAAAACGTCAAAGT
AAGTCTTTGCTATTGACGTTGAAAGATAATGCCCCTATATCGAGTGTTCA
ACTACAAAGGCAAGAAAGTAAGGAACAAAGGGATGTAGTTGGCCAAGAAT
CAACTATTTTGAACGATGGAACAGGTATAATACGTCAGCAAGAATCATTC
ATTTTGAACGATGGAGTAGGTGTAATACGTCAGCAaaaagctaccatttt
gaacGACGACGAAAAATCTCAAACACAAAGTATTGGATTAAAGAACAACA
ATACGACAGAAGATAAACAACAAAGTCGACTTAAACGCGAAAAGGACAAG
TCATCACATGGAAACCTCTCACTAAAGAATGTCCCAGAGTTCNGTCATCG
AATTAAACGCGAAGAGGACAAGTCATCACATGGAAACCTCTCACTAAAGA
ATGTCCCAAACTTCGAAACCAGTAAGATTTCTAAAACTAAAAACATCGAG
TCAGTTAAaacatcaacatcaataaaCAAAGTAGAGTTTCGATCTCCGAA
AAGTAAGAGACATGCCAACAAGACTTTAGAGGAATTAGCTACAAGGAAAA
CATGTACCACGGAGTCAGGAAAAACATTGTCAGTAATAAACAGAGCAGAA
TTTCAATCTCTCAAACGTAAGAAACACGCTGTAATGACTTTACTATTGTT
AACGCTCTGTTACTTGCTATGTTGTTTACCATTCACGGTCTATCTCGTTG
TGCAGATTGTATGGCATTCAGATAAAGTGGCAAAGAATGTGACTTTCCTA
CTCTGGTTGGCAAATAATGGTATTAACTCACTAGTCTATATCTACAGAAA
TAAAGAAAttcgaaaatatttcaaaagcatCGTCAAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069398-exon-scaffold_498-1491911889:527812..529128 | TCONS_00069398-exon-scaffold_498-1491911889:527812..529128 | Clytia hemisphaerica | exon |
| TCONS_00069398-exon-scaffold_498-1510915933:527812..529128 | TCONS_00069398-exon-scaffold_498-1510915933:527812..529128 | Clytia hemisphaerica | exon |
| TCONS_00069398-exon-scaffold_498-1575043694:527812..529128 | TCONS_00069398-exon-scaffold_498-1575043694:527812..529128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:527812..529128 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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