TCONS_00069398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069398
Unique NameTCONS_00069398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069398 ID=TCONS_00069398|Name=TCONS_00069398|organism=Clytia hemisphaerica|type=transcript|length=1317bp
atgtggagcaagattggtcagaatgGGGAAAAGAATAACAtttttatatc
agcacaatataacaatagggagaaaCTGTCCTCATACGAAAcatgtgcct
gatatgaaagGTGAAATGGGAACACTGATGaagaaataaaacctttaagt
cgCTCAATTGGGTTGATATTTTCTCAACTTTTGACGatgcttttgaaata
ttttcgaaTTTCTTTATTTCTGTAGATATAGACTAGTGAGTTAATACCAT
TATTTGCCAACCAGAGTAGGAAAGTCACATTCTTTGCCACTTTATCTGAA
TGCCATACAATCTGCACAACGAGATAGACCGTGAATGGTAAACAACATAG
CAAGTAACAGAGCGTTAACAATAGTAAAGTCATTACAGCGTGTTTCTTAC
GTTTGAGAGATTGAAATTCTGCTCTGTTTATTACTGACAATGTTTTTCCT
GACTCCGTGGTACATGTTTTCCTTGTAGCTAATTCCTCTAAAGTCTTGTT
GGCATGTCTCTTACTTTTCGGAGATCGAAACTCTACTTTGtttattgatg
ttgatgttTTAACTGACTCGATGTTTTTAGTTTTAGAAATCTTACTGGTT
TCGAAGTTTGGGACATTCTTTAGTGAGAGGTTTCCATGTGATGACTTGTC
CTCTTCGCGTTTAATTCGATGACNGAACTCTGGGACATTCTTTAGTGAGA
GGTTTCCATGTGATGACTTGTCCTTTTCGCGTTTAAGTCGACTTTGTTGT
TTATCTTCTGTCGTATTGTTGTTCTTTAATCCAATACTTTGTGTTTGAGA
TTTTTCGTCGTCgttcaaaatggtagcttttTGCTGACGTATTACACCTA
CTCCATCGTTCAAAATGAATGATTCTTGCTGACGTATTATACCTGTTCCA
TCGTTCAAAATAGTTGATTCTTGGCCAACTACATCCCTTTGTTCCTTACT
TTCTTGCCTTTGTAGTTGAACACTCGATATAGGGGCATTATCTTTCAACG
TCAATAGCAAAGACTTACTTTGACGTTTTAAATGTACCAATGacaagaaa
ttcaacaaaatcacaaacagtaacaccaaaacaaagaatGTTGGACCAAT
AACTCTATTCACCAAATATACTCTCTCAAATGTCACTTCATTGCTAAGGG
ATGCAATAACTAACCAAGCCATTACAACATTATAGCCAGAAATTATAGTC
AATTGTACAATCAAAGATACATACACTTTCCAAGGGTCGATCACCACAAA
AGGTTTCTTTAGAGATAAGAACCTCAGAATCGATATGGTTCCAAAAGCAA
ATATCCCTAAAGCGTTG
Run BLAST on NCBI

protein sequence of TCONS_00069398-protein

>TCONS_00069398-protein ID=TCONS_00069398-protein|Name=TCONS_00069398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
NALGIFAFGTISILRFLSLKKPFVVIDPWKVYVSLIVQLTIISGYNVVMA
WLVIASLSNEVTFERVYLVNRVIGPTFFVLVLLFVILLNFLSLVHLKRQS
KSLLLTLKDNAPISSVQLQRQESKEQRDVVGQESTILNDGTGIIRQQESF
ILNDGVGVIRQQKATILNDDEKSQTQSIGLKNNNTTEDKQQSRLKREKDK
SSHGNLSLKNVPEFXHRIKREEDKSSHGNLSLKNVPNFETSKISKTKNIE
SVKTSTSINKVEFRSPKSKRHANKTLEELATRKTCTTESGKTLSVINRAE
FQSLKRKKHAVMTLLLLTLCYLLCCLPFTVYLVVQIVWHSDKVAKNVTFL
LWLANNGINSLVYIYRNKEIRKYFKSIVKS
Run BLAST on NCBI

transcript from alignment at scaffold_498:527812..529128

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069398 ID=TCONS_00069398|Name=TCONS_00069398|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at scaffold_498:527812..529128 (Clytia hemisphaerica)
CAACGCTTTAGGGATATTTGCTTTTGGAACCATATCGATTCTGAGGTTCT TATCTCTAAAGAAACCTTTTGTGGTGATCGACCCTTGGAAAGTGTATGTA TCTTTGATTGTACAATTGACTATAATTTCTGGCTATAATGTTGTAATGGC TTGGTTAGTTATTGCATCCCTTAGCAATGAAGTGACATTTGAGAGAGTAT ATTTGGTGAATAGAGTTATTGGTCCAACattctttgttttggtgttactg tttgtgattttgttgaatttcttgtCATTGGTACATTTAAAACGTCAAAG TAAGTCTTTGCTATTGACGTTGAAAGATAATGCCCCTATATCGAGTGTTC AACTACAAAGGCAAGAAAGTAAGGAACAAAGGGATGTAGTTGGCCAAGAA TCAACTATTTTGAACGATGGAACAGGTATAATACGTCAGCAAGAATCATT CATTTTGAACGATGGAGTAGGTGTAATACGTCAGCAaaaagctaccattt tgaacGACGACGAAAAATCTCAAACACAAAGTATTGGATTAAAGAACAAC AATACGACAGAAGATAAACAACAAAGTCGACTTAAACGCGAAAAGGACAA GTCATCACATGGAAACCTCTCACTAAAGAATGTCCCAGAGTTCNGTCATC GAATTAAACGCGAAGAGGACAAGTCATCACATGGAAACCTCTCACTAAAG AATGTCCCAAACTTCGAAACCAGTAAGATTTCTAAAACTAAAAACATCGA GTCAGTTAAaacatcaacatcaataaaCAAAGTAGAGTTTCGATCTCCGA AAAGTAAGAGACATGCCAACAAGACTTTAGAGGAATTAGCTACAAGGAAA ACATGTACCACGGAGTCAGGAAAAACATTGTCAGTAATAAACAGAGCAGA ATTTCAATCTCTCAAACGTAAGAAACACGCTGTAATGACTTTACTATTGT TAACGCTCTGTTACTTGCTATGTTGTTTACCATTCACGGTCTATCTCGTT GTGCAGATTGTATGGCATTCAGATAAAGTGGCAAAGAATGTGACTTTCCT ACTCTGGTTGGCAAATAATGGTATTAACTCACTAGTCTATATCTACAGAA ATAAAGAAAttcgaaaatatttcaaaagcatCGTCAAAAGTTGAGAAAAT ATCAACCCAATTGAGcgacttaaaggttttatttcttCATCAGTGTTCCC ATTTCACctttcatatcaggcacatgTTTCGTATGAGGACAGtttctccc tattgttatattgtgctgatataaaaaTGTTATTCTTTTCCCcattctga ccaatcttgctccacat

Coding sequence (CDS) from alignment at scaffold_498:527812..529128

>TCONS_00069398 ID=TCONS_00069398|Name=TCONS_00069398|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_498:527812..529128 (Clytia hemisphaerica)
AACGCTTTAGGGATATTTGCTTTTGGAACCATATCGATTCTGAGGTTCTT
ATCTCTAAAGAAACCTTTTGTGGTGATCGACCCTTGGAAAGTGTATGTAT
CTTTGATTGTACAATTGACTATAATTTCTGGCTATAATGTTGTAATGGCT
TGGTTAGTTATTGCATCCCTTAGCAATGAAGTGACATTTGAGAGAGTATA
TTTGGTGAATAGAGTTATTGGTCCAACattctttgttttggtgttactgt
ttgtgattttgttgaatttcttgtCATTGGTACATTTAAAACGTCAAAGT
AAGTCTTTGCTATTGACGTTGAAAGATAATGCCCCTATATCGAGTGTTCA
ACTACAAAGGCAAGAAAGTAAGGAACAAAGGGATGTAGTTGGCCAAGAAT
CAACTATTTTGAACGATGGAACAGGTATAATACGTCAGCAAGAATCATTC
ATTTTGAACGATGGAGTAGGTGTAATACGTCAGCAaaaagctaccatttt
gaacGACGACGAAAAATCTCAAACACAAAGTATTGGATTAAAGAACAACA
ATACGACAGAAGATAAACAACAAAGTCGACTTAAACGCGAAAAGGACAAG
TCATCACATGGAAACCTCTCACTAAAGAATGTCCCAGAGTTCNGTCATCG
AATTAAACGCGAAGAGGACAAGTCATCACATGGAAACCTCTCACTAAAGA
ATGTCCCAAACTTCGAAACCAGTAAGATTTCTAAAACTAAAAACATCGAG
TCAGTTAAaacatcaacatcaataaaCAAAGTAGAGTTTCGATCTCCGAA
AAGTAAGAGACATGCCAACAAGACTTTAGAGGAATTAGCTACAAGGAAAA
CATGTACCACGGAGTCAGGAAAAACATTGTCAGTAATAAACAGAGCAGAA
TTTCAATCTCTCAAACGTAAGAAACACGCTGTAATGACTTTACTATTGTT
AACGCTCTGTTACTTGCTATGTTGTTTACCATTCACGGTCTATCTCGTTG
TGCAGATTGTATGGCATTCAGATAAAGTGGCAAAGAATGTGACTTTCCTA
CTCTGGTTGGCAAATAATGGTATTAACTCACTAGTCTATATCTACAGAAA
TAAAGAAAttcgaaaatatttcaaaagcatCGTCAAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043251XLOC_043251Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069398-proteinTCONS_00069398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069398-exon-scaffold_498-1491911889:527812..529128TCONS_00069398-exon-scaffold_498-1491911889:527812..529128Clytia hemisphaericaexon
TCONS_00069398-exon-scaffold_498-1510915933:527812..529128TCONS_00069398-exon-scaffold_498-1510915933:527812..529128Clytia hemisphaericaexon
TCONS_00069398-exon-scaffold_498-1575043694:527812..529128TCONS_00069398-exon-scaffold_498-1575043694:527812..529128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:527812..529128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33743 1.96712 1.01512 0.461099 0.0431803 0 0.493995 1.00202 0.593611 0.534751 0.486603 0.405173 0.191657 0.265384 0 0.0195119 0.072111 0.147823 0.510564 0.213707 0.18575 0.0906025 1.61538 1.50199 0.103134 0.0920448 0.0439053 0.0468569 0.49755 0.724178
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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