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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069396 ID=TCONS_00069396|Name=TCONS_00069396|organism=Clytia hemisphaerica|type=transcript|length=1304bp
AATTAAAAAAGTGAAGTTTGGTATGTTTGTTTTATATATCCTTGCGATAG
TGGTTTTGTACGGTCTCTACATTCTTGTGGCCAAATACTACAAAAATACC
TTGAAGGAACAAAATGAAGTTATTTTAAAACCAATGGTCNTATATCCTTG
CGATAGTTGTTTTGTACGGTCTCTACATTCTTGTGGCCAAATACTACAAA
AATACCTTGAAGGAACAAAATGAAGTTATTTTAAAACCAATGGTCCACAA
AGTATTGCTTGTGACTTCACACCCTGATGATGAAGTTATGTTTTTCGCAC
CTTCCATTTTCAACCTTGTTGGAATGCTTGGGAAAGAAAATATCTACTTG
CTTTGTTTATCAAATGGTGATTTTTATGGTGAAGGGAAAACAAGAGAGAA
AGAATTAGTAGCATGTTGTAAGCGGCTTGGCATTGCTCCCTCAAATATGG
CTATTGTTGATAATGAGAATTTTCAAGATGATCCTAAAGCTAGATGGGAT
AGAGAAGAGCTGAGCAGCTTGATTCAAAAGTGTGCCGATAAATTTGGTGT
CAATACTCTGTTGTCTTTTGATGCTAATGGAGTTTCTGGTCACCAGAATC
ATATGGATCTACATAAATCGATAATTTCATTGAAGCAGTTTGTACGCCTT
ATTTTGGTTGATGTCAGTATCATTCGCAAATACAGTTCTGTTTTTGATGT
GTTTTTCACCTCCGCCGTCAGCTATTTTTCAACAGATGCTTCgtacgttt
tgtttttgaattcaCCCATGAAGGTTTTGCAATCGTACATGGCAATGCAT
TGTCACAAAAGTCAATTCACATGGTTTCGTAAGCTATATTTTTTGTACTC
CAAATATCTTTTattgaatcaaatcaaaatcattGCAAAAGGAAGATGAA
CTAAGGACTAGTCTGATTTAAAGTCAAATTTATGAGATCAAATCTGTCCT
AATTGTCAAAATAATATTAATATTTAACTGAATCAAGAAGAAGATCTTGA
TCAGGTTTGATTGACTGACTTTTTATATACATTGTTCACAGTTTGTTAAT
ATAATATTCAAATAATGTAAcgatttttgtaaattttgagaaGTTTAAGC
GTTTTTTAAtgctgttattgtttttatagaaTTGTAAATAGAAAAATCGC
ATTTGAAATTGTAAATAAAGAAATcatcatagtgtgcagaggggtccagc
cccaGCAATTTTCAGGGAGGCTAAGGATAATAGCCCCCGACTataaattc
tagaaacatatagcccccaccttcacaaagcaaTAGATTTATTGCGTCGC
agac Run BLAST on NCBI protein sequence of TCONS_00069396-protein >TCONS_00069396-protein ID=TCONS_00069396-protein|Name=TCONS_00069396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MVHKVLLVTSHPDDEVMFFAPSIFNLVGMLGKENIYLLCLSNGDFYGEGK
TREKELVACCKRLGIAPSNMAIVDNENFQDDPKARWDREELSSLIQKCAD
KFGVNTLLSFDANGVSGHQNHMDLHKSIISLKQFVRLILVDVSIIRKYSS
VFDVFFTSAVSYFSTDASYVLFLNSPMKVLQSYMAMHCHKSQFTWFRKLY
FLYSKYLLLNQIKIIAKGR Run BLAST on NCBI transcript from alignment at scaffold_498:395107..396410 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069396 ID=TCONS_00069396|Name=TCONS_00069396|organism=Clytia hemisphaerica|type=transcript|length=1304bp|location=Sequence derived from alignment at scaffold_498:395107..396410 (Clytia hemisphaerica)
gtctGCGACGCAATAAATCTAttgctttgtgaaggtgggggctatatgtt
tctagaatttatAGTCGGGGGCTATTATCCTTAGCCTCCCTGAAAATTGC
tggggctggacccctctgcacactatgatgATTTCTTTATTTACAATTTC
AAATGCGATTTTTCTATTTACAAttctataaaaacaataacagcaTTAAA
AAACGCTTAAACttctcaaaatttacaaaaatcgTTACATTATTTGAATA
TTATATTAACAAACTGTGAACAATGTATATAAAAAGTCAGTCAATCAAAC
CTGATCAAGATCTTCTTCTTGATTCAGTTAAATATTAATATTATTTTGAC
AATTAGGACAGATTTGATCTCATAAATTTGACTTTAAATCAGACTAGTCC
TTAGTTCATCTTCCTTTTGCaatgattttgatttgattcaatAAAAGATA
TTTGGAGTACAAAAAATATAGCTTACGAAACCATGTGAATTGACTTTTGT
GACAATGCATTGCCATGTACGATTGCAAAACCTTCATGGGtgaattcaaa
aacaaaacgtacGAAGCATCTGTTGAAAAATAGCTGACGGCGGAGGTGAA
AAACACATCAAAAACAGAACTGTATTTGCGAATGATACTGACATCAACCA
AAATAAGGCGTACAAACTGCTTCAATGAAATTATCGATTTATGTAGATCC
ATATGATTCTGGTGACCAGAAACTCCATTAGCATCAAAAGACAACAGAGT
ATTGACACCAAATTTATCGGCACACTTTTGAATCAAGCTGCTCAGCTCTT
CTCTATCCCATCTAGCTTTAGGATCATCTTGAAAATTCTCATTATCAACA
ATAGCCATATTTGAGGGAGCAATGCCAAGCCGCTTACAACATGCTACTAA
TTCTTTCTCTCTTGTTTTCCCTTCACCATAAAAATCACCATTTGATAAAC
AAAGCAAGTAGATATTTTCTTTCCCAAGCATTCCAACAAGGTTGAAAATG
GAAGGTGCGAAAAACATAACTTCATCATCAGGGTGTGAAGTCACAAGCAA
TACTTTGTGGACCATTGGTTTTAAAATAACTTCATTTTGTTCCTTCAAGG
TATTTTTGTAGTATTTGGCCACAAGAATGTAGAGACCGTACAAAACAACT
ATCGCAAGGATATANGACCATTGGTTTTAAAATAACTTCATTTTGTTCCT
TCAAGGTATTTTTGTAGTATTTGGCCACAAGAATGTAGAGACCGTACAAA
ACCACTATCGCAAGGATATATAAAACAAACATACCAAACTTCACTTTTTT
AATT Coding sequence (CDS) from alignment at scaffold_498:395107..396410 >TCONS_00069396 ID=TCONS_00069396|Name=TCONS_00069396|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_498:395107..396410 (Clytia hemisphaerica)
TCATCTTCCTTTTGCaatgattttgatttgattcaatAAAAGATATTTGG
AGTACAAAAAATATAGCTTACGAAACCATGTGAATTGACTTTTGTGACAA
TGCATTGCCATGTACGATTGCAAAACCTTCATGGGtgaattcaaaaacaa
aacgtacGAAGCATCTGTTGAAAAATAGCTGACGGCGGAGGTGAAAAACA
CATCAAAAACAGAACTGTATTTGCGAATGATACTGACATCAACCAAAATA
AGGCGTACAAACTGCTTCAATGAAATTATCGATTTATGTAGATCCATATG
ATTCTGGTGACCAGAAACTCCATTAGCATCAAAAGACAACAGAGTATTGA
CACCAAATTTATCGGCACACTTTTGAATCAAGCTGCTCAGCTCTTCTCTA
TCCCATCTAGCTTTAGGATCATCTTGAAAATTCTCATTATCAACAATAGC
CATATTTGAGGGAGCAATGCCAAGCCGCTTACAACATGCTACTAATTCTT
TCTCTCTTGTTTTCCCTTCACCATAAAAATCACCATTTGATAAACAAAGC
AAGTAGATATTTTCTTTCCCAAGCATTCCAACAAGGTTGAAAATGGAAGG
TGCGAAAAACATAACTTCATCATCAGGGTGTGAAGTCACAAGCAATACTT
TGTGGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069396-exon-scaffold_498-1491911889:395107..396410 | TCONS_00069396-exon-scaffold_498-1491911889:395107..396410 | Clytia hemisphaerica | exon |
| TCONS_00069396-exon-scaffold_498-1510915933:395107..396410 | TCONS_00069396-exon-scaffold_498-1510915933:395107..396410 | Clytia hemisphaerica | exon |
| TCONS_00069396-exon-scaffold_498-1575043694:395107..396410 | TCONS_00069396-exon-scaffold_498-1575043694:395107..396410 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:395107..396410 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003737 | GlcNAc_PI_deacetylase-related |
| IPR024078 | LmbE-like_dom |
Blast
BLAST of TCONS_00069396 vs. Swiss-Prot (Human)
Match: PIGL (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Homo sapiens GN=PIGL PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.640e-42 Identity = 77/201 (38.31%), Postives = 119/201 (59.20%), Query Frame = 3
Query: 249 KVLLVTSHPDDEVMFFAPSIFNLVGMLGKENIYLLCLSNGDFYGEGKTREKELVACCKRLGIAPSNMAIVDNENFQDDPKARWDREELSSLIQKCADKFGVNTLLSFDANGVSGHQNHMDLHKSIISL-------KQFVRLILVDVSIIRKYSSVFDVFFTSAVSYFSTDASYVLFLNSPMKVLQSYMAMHCHKSQFTWFR 830
+ LLV +HPDDE MFFAP++ L + + +YLLC S G++Y +G+TR+KEL+ C LGI S++ I+DN +F DDP +WD E ++ ++ + + G+N +++FDA GVSGH NH+ L+ ++ +L K L L V+++RKY + VLF+ + +V Q+ AM CH+SQ WFR
Sbjct: 42 RTLLVIAHPDDEAMFFAPTVLGLARL--RHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKY------ISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFR 234
The following BLAST results are available for this feature:
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