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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069394 ID=TCONS_00069394|Name=TCONS_00069394|organism=Clytia hemisphaerica|type=transcript|length=2421bp
TTAAGCACTGACCCAGATTACCATATGAAATATTTCTCATTCATTTCATT
AATccatactcacttttttagaaaacataAATATCACACGAAAAAGGGAA
AAATGCACCTCCTAAAGAAATTACTTATACTGCTCCAGATGCACCATACA
AATACATTTTATGTCGATTCAATGAAGACTATGACATTGTCTCAGAATTA
CAAACCCATTGAAGCACAATTTTGGCAGCGTTACAGTTTTGTTATCGTTC
AATCACATACACAACATCAAAACAGTACACTTTCATATAATGCGCACACT
GAATATGGACAAAGCTACCAATCTTTGAATTCAGGATTAATCCAAAGAAT
TGATGACTCTTATAGTCGAAATGTCGAGATGTATGTTAAAAGTAGTAAAG
CTGAGATGGTAAATGCAGTATTACTAGCAGTACCGGTTGAAAACCGATAT
CCAATACCAGGAGGCTGTTGCCTAACATGTGCACTGGAGAATGACCCTAA
TATTAAAATCAAGTATGACGAGTTTAAAACAAGTGTGACATTCCATAGAG
CAAGCAAATACTACTCATCACAATCAACACCAGGCTGTGACAACTCTGAG
AAGCCAGCTACCTATGATTTGGTGTATGATGTGTATTATTATTACATTGA
TCAGAATAATTATGAAGAAGATGCACTTTTTGATGCTTTGTATGCCATGT
CCACACCCACCAGGATACGTTTAAACGGTATCAAATTAACTACGATCAAA
TCACAAGAGTCGTTATCAGTAGATATTGAAACATTATTTGCACAAGGCAT
TGTTTTGAATGTCATTGTTAGTGATTCTAGCTCTGGAACCGATTTGGAGA
CAGCCTATGTACCAGCTGCAGTTTATGCTTGTAATTTTACTGCTAGTGAA
GATTCGCCAAATAATTGCCAAGCTAGAGGATCAACAACCGTACTCATATT
TTGTATTTCATTTGCTGTACTTGGTTTCCTCTTATCTGTTGCTGGATTCA
AATGCTTTCGTTTATTTGTGTTTTCAAGTGGCGTGGCTTTTTACTGGTTT
ATCATTTTCATTGTAATGTCTAGATACCTGGACCCCAATGAAGAGAGTCG
CCAAGACACTCTCATGATATCTTTCCTAATATCTTTGGTTGGTGGTGGAT
TTACTTTGTTTTTGTATGGATTtgagaaatgtttttatttagtATTCCAC
AAAACATGTTTGGTATTTGGAATGTTCTTGTCAGCTATCATTTTCTACAC
ACCGTTTGGTTATTTTGAAGTCTGGAATGAAGATTACCGATTCATTTTGA
TGTTTGCCTGTTTTGCACTCTTCTTTAGTATGGTATGTTTGTTTATACCT
AAAGCTGCTTGTTATTTGAGTTCCAGCTTAATAGGGTCCTATGCGGTTAT
CATGGTACCAAACTACTTTCTCAGAGGAAATATGCAATATATCATTTTGA
CTATTGTTAACCGTATTACTGTATTTAAATTTGGGTATCTTTACCTTCGC
CGACCGTATGATCAAGTAGAATACATTCTCACAGGTGTTTGGGGAGGACT
TTTCATTCTTGGTTGCATTATCCAATATTGTACCACCAAGGATCAGGACT
TCCAGTACTCTGGTAAACAGCTACGTCACAAAGTATGGTCAAAGATCGGT
GAAAGTGTTAATCTAAGTAAGAAGAATAAATCGAGGAAGCAGAAAAATAT
ACGTCGACCTGTACCAGCACGCCAATACCAACGCTCTCCACCACCACAAG
AGGAACGTAGACCTCTGCTGGCTGATGATCACTTGCAACCGACTTTTGGC
GGTTATGGTGGCTTTGATGAGCCTCCTCAGCAGGTTGTTGAACATTACCC
AGAACACCATCAACCGTTATTGCATCAGCCTTTATTTGTTGGATACGTCT
CATCAACTGAAGTTGAACCTACAGCTCCAAGACCGTCAGCTCCAGTGCAA
CATTCACCACCCAATTCTGCGCCACCCCCTTATCAATTCACTGATAACAC
AACCAACCAAGATTTAGattcaatcaataatcaaaatgTTGACCAGAATc
ttattgattttgatgaaagaccacttcaaaatgttgaacaTCTTGTTTTG
AATGATGAAGACCAACGTGCTACATACAGGAAACCTAGTGAGAGATATCC
CAAAGTTGTTTAGTTGATcgatttgttaatttttttaccaTGATTGGcct
gttccattaaatttccatacaggggggtggacgaactttttttaggcaaa
aaatgaTTCttagaaatgtgtggataccccctggaaaatggcaaaattta
caaaagaagccttggaaaaattctttttgtaccTTAAAAGTAAGGGTGAT
GATGGATGAACTAAAATGAGTATTTTACccctgaaaattttagaataaaa
tgaaaaaatatttgtttagac Run BLAST on NCBI protein sequence of TCONS_00069394-protein >TCONS_00069394-protein ID=TCONS_00069394-protein|Name=TCONS_00069394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=720bp
LSTDPDYHMKYFSFISLIHTHFFRKHKYHTKKGKMHLLKKLLILLQMHHT
NTFYVDSMKTMTLSQNYKPIEAQFWQRYSFVIVQSHTQHQNSTLSYNAHT
EYGQSYQSLNSGLIQRIDDSYSRNVEMYVKSSKAEMVNAVLLAVPVENRY
PIPGGCCLTCALENDPNIKIKYDEFKTSVTFHRASKYYSSQSTPGCDNSE
KPATYDLVYDVYYYYIDQNNYEEDALFDALYAMSTPTRIRLNGIKLTTIK
SQESLSVDIETLFAQGIVLNVIVSDSSSGTDLETAYVPAAVYACNFTASE
DSPNNCQARGSTTVLIFCISFAVLGFLLSVAGFKCFRLFVFSSGVAFYWF
IIFIVMSRYLDPNEESRQDTLMISFLISLVGGGFTLFLYGFEKCFYLVFH
KTCLVFGMFLSAIIFYTPFGYFEVWNEDYRFILMFACFALFFSMVCLFIP
KAACYLSSSLIGSYAVIMVPNYFLRGNMQYIILTIVNRITVFKFGYLYLR
RPYDQVEYILTGVWGGLFILGCIIQYCTTKDQDFQYSGKQLRHKVWSKIG
ESVNLSKKNKSRKQKNIRRPVPARQYQRSPPPQEERRPLLADDHLQPTFG
GYGGFDEPPQQVVEHYPEHHQPLLHQPLFVGYVSSTEVEPTAPRPSAPVQ
HSPPNSAPPPYQFTDNTTNQDLDSINNQNVDQNLIDFDERPLQNVEHLVL
NDEDQRATYRKPSERYPKVV Run BLAST on NCBI transcript from alignment at scaffold_498:388893..391313 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069394 ID=TCONS_00069394|Name=TCONS_00069394|organism=Clytia hemisphaerica|type=transcript|length=2421bp|location=Sequence derived from alignment at scaffold_498:388893..391313 (Clytia hemisphaerica)
gtctaaacaaatattttttcattttattctaaaattttcagggGTAAAAT
ACTCATTTTAGTTCATCCATCATCACCCTTACTTTTAAggtacaaaaaga
atttttccaaggcttcttttgtaaattttgccattttccagggggtatcc
acacatttctaaGAAtcattttttgcctaaaaaaagttcgtccacccccc
tgtatggaaatttaatggaacaggCCAATCAtggtaaaaaaattaacaaa
tcgATCAACTAAACAACTTTGGGATATCTCTCACTAGGTTTCCTGTATGT
AGCACGTTGGTCTTCATCATTCAAAACAAGAtgttcaacattttgaagtg
gtctttcatcaaaatcaataagATTCTGGTCAAcattttgattattgatt
gaatCTAAATCTTGGTTGGTTGTGTTATCAGTGAATTGATAAGGGGGTGG
CGCAGAATTGGGTGGTGAATGTTGCACTGGAGCTGACGGTCTTGGAGCTG
TAGGTTCAACTTCAGTTGATGAGACGTATCCAACAAATAAAGGCTGATGC
AATAACGGTTGATGGTGTTCTGGGTAATGTTCAACAACCTGCTGAGGAGG
CTCATCAAAGCCACCATAACCGCCAAAAGTCGGTTGCAAGTGATCATCAG
CCAGCAGAGGTCTACGTTCCTCTTGTGGTGGTGGAGAGCGTTGGTATTGG
CGTGCTGGTACAGGTCGACGTATATTTTTCTGCTTCCTCGATTTATTCTT
CTTACTTAGATTAACACTTTCACCGATCTTTGACCATACTTTGTGACGTA
GCTGTTTACCAGAGTACTGGAAGTCCTGATCCTTGGTGGTACAATATTGG
ATAATGCAACCAAGAATGAAAAGTCCTCCCCAAACACCTGTGAGAATGTA
TTCTACTTGATCATACGGTCGGCGAAGGTAAAGATACCCAAATTTAAATA
CAGTAATACGGTTAACAATAGTCAAAATGATATATTGCATATTTCCTCTG
AGAAAGTAGTTTGGTACCATGATAACCGCATAGGACCCTATTAAGCTGGA
ACTCAAATAACAAGCAGCTTTAGGTATAAACAAACATACCATACTAAAGA
AGAGTGCAAAACAGGCAAACATCAAAATGAATCGGTAATCTTCATTCCAG
ACTTCAAAATAACCAAACGGTGTGTAGAAAATGATAGCTGACAAGAACAT
TCCAAATACCAAACATGTTTTGTGGAATactaaataaaaacatttctcaA
ATCCATACAAAAACAAAGTAAATCCACCACCAACCAAAGATATTAGGAAA
GATATCATGAGAGTGTCTTGGCGACTCTCTTCATTGGGGTCCAGGTATCT
AGACATTACAATGAAAATGATAAACCAGTAAAAAGCCACGCCACTTGAAA
ACACAAATAAACGAAAGCATTTGAATCCAGCAACAGATAAGAGGAAACCA
AGTACAGCAAATGAAATACAAAATATGAGTACGGTTGTTGATCCTCTAGC
TTGGCAATTATTTGGCGAATCTTCACTAGCAGTAAAATTACAAGCATAAA
CTGCAGCTGGTACATAGGCTGTCTCCAAATCGGTTCCAGAGCTAGAATCA
CTAACAATGACATTCAAAACAATGCCTTGTGCAAATAATGTTTCAATATC
TACTGATAACGACTCTTGTGATTTGATCGTAGTTAATTTGATACCGTTTA
AACGTATCCTGGTGGGTGTGGACATGGCATACAAAGCATCAAAAAGTGCA
TCTTCTTCATAATTATTCTGATCAATGTAATAATAATACACATCATACAC
CAAATCATAGGTAGCTGGCTTCTCAGAGTTGTCACAGCCTGGTGTTGATT
GTGATGAGTAGTATTTGCTTGCTCTATGGAATGTCACACTTGTTTTAAAC
TCGTCATACTTGATTTTAATATTAGGGTCATTCTCCAGTGCACATGTTAG
GCAACAGCCTCCTGGTATTGGATATCGGTTTTCAACCGGTACTGCTAGTA
ATACTGCATTTACCATCTCAGCTTTACTACTTTTAACATACATCTCGACA
TTTCGACTATAAGAGTCATCAATTCTTTGGATTAATCCTGAATTCAAAGA
TTGGTAGCTTTGTCCATATTCAGTGTGCGCATTATATGAAAGTGTACTGT
TTTGATGTTGTGTATGTGATTGAACGATAACAAAACTGTAACGCTGCCAA
AATTGTGCTTCAATGGGTTTGTAATTCTGAGACAATGTCATAGTCTTCAT
TGAATCGACATAAAATGTATTTGTATGGTGCATCTGGAGCAGTATAAGTA
ATTTCTTTAGGAGGTGCATTTTTCCCTTTTTCGTGTGATATTtatgtttt
ctaaaaaagtgagtatggATTAATGAAATGAATGAGAAATATTTCATATG
GTAATCTGGGTCAGTGCTTAA Coding sequence (CDS) from alignment at scaffold_498:388893..391313 >TCONS_00069394 ID=TCONS_00069394|Name=TCONS_00069394|organism=Clytia hemisphaerica|type=CDS|length=2163bp|location=Sequence derived from alignment at scaffold_498:388893..391313 (Clytia hemisphaerica)
CTAAACAACTTTGGGATATCTCTCACTAGGTTTCCTGTATGTAGCACGTT
GGTCTTCATCATTCAAAACAAGAtgttcaacattttgaagtggtctttca
tcaaaatcaataagATTCTGGTCAAcattttgattattgattgaatCTAA
ATCTTGGTTGGTTGTGTTATCAGTGAATTGATAAGGGGGTGGCGCAGAAT
TGGGTGGTGAATGTTGCACTGGAGCTGACGGTCTTGGAGCTGTAGGTTCA
ACTTCAGTTGATGAGACGTATCCAACAAATAAAGGCTGATGCAATAACGG
TTGATGGTGTTCTGGGTAATGTTCAACAACCTGCTGAGGAGGCTCATCAA
AGCCACCATAACCGCCAAAAGTCGGTTGCAAGTGATCATCAGCCAGCAGA
GGTCTACGTTCCTCTTGTGGTGGTGGAGAGCGTTGGTATTGGCGTGCTGG
TACAGGTCGACGTATATTTTTCTGCTTCCTCGATTTATTCTTCTTACTTA
GATTAACACTTTCACCGATCTTTGACCATACTTTGTGACGTAGCTGTTTA
CCAGAGTACTGGAAGTCCTGATCCTTGGTGGTACAATATTGGATAATGCA
ACCAAGAATGAAAAGTCCTCCCCAAACACCTGTGAGAATGTATTCTACTT
GATCATACGGTCGGCGAAGGTAAAGATACCCAAATTTAAATACAGTAATA
CGGTTAACAATAGTCAAAATGATATATTGCATATTTCCTCTGAGAAAGTA
GTTTGGTACCATGATAACCGCATAGGACCCTATTAAGCTGGAACTCAAAT
AACAAGCAGCTTTAGGTATAAACAAACATACCATACTAAAGAAGAGTGCA
AAACAGGCAAACATCAAAATGAATCGGTAATCTTCATTCCAGACTTCAAA
ATAACCAAACGGTGTGTAGAAAATGATAGCTGACAAGAACATTCCAAATA
CCAAACATGTTTTGTGGAATactaaataaaaacatttctcaAATCCATAC
AAAAACAAAGTAAATCCACCACCAACCAAAGATATTAGGAAAGATATCAT
GAGAGTGTCTTGGCGACTCTCTTCATTGGGGTCCAGGTATCTAGACATTA
CAATGAAAATGATAAACCAGTAAAAAGCCACGCCACTTGAAAACACAAAT
AAACGAAAGCATTTGAATCCAGCAACAGATAAGAGGAAACCAAGTACAGC
AAATGAAATACAAAATATGAGTACGGTTGTTGATCCTCTAGCTTGGCAAT
TATTTGGCGAATCTTCACTAGCAGTAAAATTACAAGCATAAACTGCAGCT
GGTACATAGGCTGTCTCCAAATCGGTTCCAGAGCTAGAATCACTAACAAT
GACATTCAAAACAATGCCTTGTGCAAATAATGTTTCAATATCTACTGATA
ACGACTCTTGTGATTTGATCGTAGTTAATTTGATACCGTTTAAACGTATC
CTGGTGGGTGTGGACATGGCATACAAAGCATCAAAAAGTGCATCTTCTTC
ATAATTATTCTGATCAATGTAATAATAATACACATCATACACCAAATCAT
AGGTAGCTGGCTTCTCAGAGTTGTCACAGCCTGGTGTTGATTGTGATGAG
TAGTATTTGCTTGCTCTATGGAATGTCACACTTGTTTTAAACTCGTCATA
CTTGATTTTAATATTAGGGTCATTCTCCAGTGCACATGTTAGGCAACAGC
CTCCTGGTATTGGATATCGGTTTTCAACCGGTACTGCTAGTAATACTGCA
TTTACCATCTCAGCTTTACTACTTTTAACATACATCTCGACATTTCGACT
ATAAGAGTCATCAATTCTTTGGATTAATCCTGAATTCAAAGATTGGTAGC
TTTGTCCATATTCAGTGTGCGCATTATATGAAAGTGTACTGTTTTGATGT
TGTGTATGTGATTGAACGATAACAAAACTGTAACGCTGCCAAAATTGTGC
TTCAATGGGTTTGTAATTCTGAGACAATGTCATAGTCTTCATTGAATCGA
CATAAAATGTATTTGTATGGTGCATCTGGAGCAGTATAAGTAATTTCTTT
AGGAGGTGCATTTTTCCCTTTTTCGTGTGATATTtatgttttctaaaaaa
gtgagtatggATTAATGAAATGAATGAGAAATATTTCATATGGTAATCTG
GGTCAGTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00069394-exon-scaffold_498-1491911889:388893..391313 | TCONS_00069394-exon-scaffold_498-1491911889:388893..391313 | Clytia hemisphaerica | exon |
| TCONS_00069394-exon-scaffold_498-1510915933:388893..391313 | TCONS_00069394-exon-scaffold_498-1510915933:388893..391313 | Clytia hemisphaerica | exon |
| TCONS_00069394-exon-scaffold_498-1575043694:388893..391313 | TCONS_00069394-exon-scaffold_498-1575043694:388893..391313 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:388893..391313 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00069394 vs. Swiss-Prot (Human)
Match: TM7S3 (Transmembrane 7 superfamily member 3 OS=Homo sapiens GN=TM7SF3 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.706e-45 Identity = 135/494 (27.33%), Postives = 247/494 (50.00%), Query Frame = 1
Query: 235 SFVIVQSHTQHQNSTLSYNAHTEYGQSYQSLNSGLIQRIDDSYSRNVEMYVKSSKAEMVNAVLLAVPVENRYPIPGGCCLTCALENDPNIKIKYDEFKTSVTFHRAS-KYYSSQSTPGCD-NSEKPATXXXXXXXXXXXXXXXXXXXXALFDALYAMSTPTRIRLNGIKLTTIKSQESLSVDIETLFAQGIVLNVIVSDSSSGTDLETAYVPAAVYACNFTASEDSPNNCQARGSTTVLIFCISFAVLGFLLSVAGFKCFRLFVFSSGVAFYWFIIFIVMSRYLDPNEESRQDTLMISFLISLVGGGFTLFLYGFEKCFYLVFHKTCLVFGMFLSAIIFYTPFGYFEVWNEDYRFILMFACFALFFSMVCLFIPKAACYLSSSLIGSYAVIMVPNYFLRGNMQYIILTIVNRITVFKFGYLYLRRPYDQVEYILTGVWGGLFILGCIIQYCTTKDQDFQYSGKQLRHKVWSKIGESVNLSKKNKSRKQKNIRRP 1710
+F+I Q H+Q+QN+T+S++ S SGL+ + S Y+ +S + V + + + R P+PGGC L L+ DPNI ++Y+ F+T++ F A+ Y P CD +++ + + L YDVY Y++ +N+ E+ L L M + +++ + +K+ T+ + + SV +L QG++ NVIV D T AY+PA YAC+F A E S C + G + +F FA+LGF + G + ++ +F G F +I+++R L P + L+++ + VGG F + ++ + LV G +S++ F+TP G +++++D F + F+C A+ +V + + L+ +IGSY+V++ + + ++ YI L ++ R F + P+ ++I+ VWG L + G +Q + + F +K+W K+ + R+ NI P
Sbjct: 63 TFLIFQIHSQYQNTTVSFSPTLLSNSSETGTASGLVFILRPEQS-TCTWYLGTSGIQPVQNMAILLSYSERDPVPGGCNLEFDLDIDPNIYLEYNFFETTIKFAPANLGYARGVDPPPCDAGTDQDSRWRLQYDVYQYFLPENDLTEEMLLKHLQRMVSVPQVKASALKVVTLTANDKTSVSFSSLPGQGVIYNVIVWDPFLNTS--AAYIPAHTYACSFEAGEGS---CASLGRVSSKVFFTLFALLGFFICFFGHRFWKTELFFIGFIIMGFFFYILITR-LTPIKYDVN--LILTAVTGSVGGMFLVAVWWRFGILSICMLCVGLVLGFLISSVTFFTPLGNLKIFHDDGVFWVTFSCIAILIPVVFMGCLRILNILTCGVIGSYSVVLAIDSYWSTSLSYITLNVLKRALNKDFHRAFTNVPFQTNDFIILAVWGMLAVSGITLQIRRERGRPFFPPHP---YKLW----------KQERERRVTNILDP 534
The following BLAST results are available for this feature:
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