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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069388 ID=TCONS_00069388|Name=TCONS_00069388|organism=Clytia hemisphaerica|type=transcript|length=2183bp
ctacggttgaaaaggtgaATTAGCCTCATAAACTTAACTCAGAAATCAAG
TATTTAATCAAGTTAATGGGTTTTTTTATAGTTTGTCGATCTATATTCAG
CCTAATGTCTCATTCTTTTGTTAGAGGCTATAGGTGTCGAAAAGGCCAAA
AGATAGGTGGAGGTCAATTGAAACATATCGAAAGTAATTGATATAAGTTT
GTTCGAATTCTCTTATTCATGACAGTACTGAGGTTTAAGCATATCAGGAT
AATCacgaaaacggacaaaaaatgtaataggctagtgaaaatacgaaatt
tgattggttgaaactcactagcctgttaaatatTCGTttgtcgtcgtgat
tttaccgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGAGTACTGGACTCTTAGTTATAATAAAAGATTAGTAATTAATTC
ACTCTCACATGACATTGTAAATTTAATCAGAAGACTGACAAAAAGTTTAT
CGATATATATTGTAAAATGGTGGGATTTTTAACCaatgaaaattataaaa
gaaGTAAGTCTTGGATGTATGTAAAGTTAAGTACGTATTAGTTATGGATT
GAAACTTTATTACCGTACTTGCGGCTAACTATTCAAAAGTCATCTCTCAA
CAATCAAATGCTTCTCTGAGCACTGATTGGTTTATTTGGCTCAATTACAT
CATAGCCCTAATTATGGTAACTTTTGCTGAGAATTCTTCAGGATCTCCTA
AACTTCATTTAACTTCAACcctatacaccttttcaaccgtagccgccaat
tgccactTGGGCATTTATTGTccattttaccaccctaaaactgtTCCAGT
CTTTCTTTCGCACCTTTAGACAAtataaaaaggtgtaaaaaaagattgga
tcgagtttaggggggtTATTGAacaataaagtggcacgcgcctgactgtG
CAACTGCGGTTGAAAAGGTGAATTAGCCTCATAAACTAAACTCGGAAATC
AAGTATTTAATCAAGTTAATGGGTTTTTTTCTAGTTTGTCGATCTATATT
CACCCTAATGTCTCATTCTTTCGTTAGAGGCTATAGGTGTCGAAAAGGCC
AAAAGATAGGCGGAGGTCAATTGAAACATATCGAAAGTAATTGATATAAG
TTTGTTCGAATTCTCTTATTCATGACAGTACTGAGGTTTAAGCATATCAG
GATAATCacgaaaacggacaaaaaatgtaataggctagtgaaaatacgaa
atttgattggttgaaactcactagcctgttaaatatTCGTtggtcgtcgt
gattttaccgaatTACTTAACTTATCACTAATATCTTCTTATGGAAACAC
CCGAAGAAGCTAAACTGTTTTCCTCAAATGTAGAGTTGTATAATTAACAC
TAATGAAAAACGCCCGGTGCCTTTGGAATGGTTTCCGTTTAAAAATCAAC
ATCATATAATGATTTGGTCCGAGTAATTCAAGATGAAGTACCTATCGTAA
GCAGCCAAAAATAGCACAATTTATCAATGTTTGTTGCTGAAAATGGCAAA
GTCTGAagtttttcgggtgtttctgaTAGGAGAGTGACGTTATCTCGTGA
ACTAACTCAATTGAAAAAGATTGGGTACTAATTGGGTCCTCGTTATGCTT
AACATTTGGAATTTAAATTTCTGATTAGCATTATTATGTATTTAAGGAAT
CATCTGTGCATTGAACTTTAAGATAAAGACTGGAATGGGCGTCTACTTAT
ACTTGCAGTGCGGTCGTtaacatttaaaaatcttcatagCTCTACCTACC
ATTTTGATTATCTTTTGAGtattattttttccatttttctcttctttgtt
tttttctgacctCAGACATAGCGTAGAAAAGAAGGGCATGAGTCtttatt
ttttgcatttttttgtcgTGTAAGAATCATCTCTCATGCACAAATTTTTC
ACCCCTCCTGCCTACGCTACCGTCAGCCGACAGGTGGAGATTTCCGATGA
AAATGCCCATTCCAGTCTTTATATTAGAGTTCGATCATTCTGTTCTGtgt
gttgttgtttttaatttttatttgtaaatattcATCGTATGTCTTAAGTA
CCTTTACTGCTTGTAAATATTTAgtcaatttccttttttttataaagctA
GAGTGCTCAAGATCTGCTTAAATCAAAACTGCG Run BLAST on NCBI transcript from alignment at scaffold_498:279910..282092 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069388 ID=TCONS_00069388|Name=TCONS_00069388|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at scaffold_498:279910..282092 (Clytia hemisphaerica)
CGCAGTTTTGATTTAAGCAGATCTTGAGCACTCTagctttataaaaaaaa
ggaaattgacTAAATATTTACAAGCAGTAAAGGTACTTAAGACATACGAT
gaatatttacaaataaaaattaaaaacaacaacacaCAGAACAGAATGAT
CGAACTCTAATATAAAGACTGGAATGGGCATTTTCATCGGAAATCTCCAC
CTGTCGGCTGACGGTAGCGTAGGCAGGAGGGGTGAAAAATTTGTGCATGA
GAGATGATTCTTACAcgacaaaaaaatgcaaaaaataaaGACTCATGCCC
TTCTTTTCTACGCTATGTCTGaggtcagaaaaaaacaaagaagagaaaaa
tggaaaaaataataCTCAAAAGATAATCAAAATGGTAGGTAGAGctatga
agatttttaaatgttaACGACCGCACTGCAAGTATAAGTAGACGCCCATT
CCAGTCTTTATCTTAAAGTTCAATGCACAGATGATTCCTTAAATACATAA
TAATGCTAATCAGAAATTTAAATTCCAAATGTTAAGCATAACGAGGACCC
AATTAGTACCCAATCTTTTTCAATTGAGTTAGTTCACGAGATAACGTCAC
TCTCCTAtcagaaacacccgaaaaactTCAGACTTTGCCATTTTCAGCAA
CAAACATTGATAAATTGTGCTATTTTTGGCTGCTTACGATAGGTACTTCA
TCTTGAATTACTCGGACCAAATCATTATATGATGTTGATTTTTAAACGGA
AACCATTCCAAAGGCACCGGGCGTTTTTCATTAGTGTTAATTATACAACT
CTACATTTGAGGAAAACAGTTTAGCTTCTTCGGGTGTTTCCATAAGAAGA
TATTAGTGATAAGTTAAGTAattcggtaaaatcacgacgaccaACGAata
tttaacaggctagtgagtttcaaccaatcaaatttcgtattttcactagc
ctattacattttttgtccgttttcgtGATTATCCTGATATGCTTAAACCT
CAGTACTGTCATGAATAAGAGAATTCGAACAAACTTATATCAATTACTTT
CGATATGTTTCAATTGACCTCCGCCTATCTTTTGGCCTTTTCGACACCTA
TAGCCTCTAACGAAAGAATGAGACATTAGGGTGAATATAGATCGACAAAC
TAGAAAAAAACCCATTAACTTGATTAAATACTTGATTTCCGAGTTTAGTT
TATGAGGCTAATTCACCTTTTCAACCGCAGTTGCacagtcaggcgcgtgc
cactttattgtTCAATAacccccctaaactcgatccaatctttttttaca
cctttttataTTGTCTAAAGGTGCGAAAGAAAGACTGGAacagttttagg
gtggtaaaatggACAATAAATGCCCAagtggcaattggcggctacggttg
aaaaggtgtataggGTTGAAGTTAAATGAAGTTTAGGAGATCCTGAAGAA
TTCTCAGCAAAAGTTACCATAATTAGGGCTATGATGTAATTGAGCCAAAT
AAACCAATCAGTGCTCAGAGAAGCATTTGATTGTTGAGAGATGACTTTTG
AATAGTTAGCCGCAAGTACGGTAATAAAGTTTCAATCCATAACTAATACG
TACTTAACTTTACATACATCCAAGACTTACttcttttataattttcattG
GTTAAAAATCCCACCATTTTACAATATATATCGATAAACTTTTTGTCAGT
CTTCTGATTAAATTTACAATGTCATGTGAGAGTGAATTAATTACTAATCT
TTTATTATAACTAAGAGTCCAGTACTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtcggtaaaatcacgacgacaaACGA
atatttaacaggctagtgagtttcaaccaatcaaatttcgtattttcact
agcctattacattttttgtccgttttcgtGATTATCCTGATATGCTTAAA
CCTCAGTACTGTCATGAATAAGAGAATTCGAACAAACTTATATCAATTAC
TTTCGATATGTTTCAATTGACCTCCACCTATCTTTTGGCCTTTTCGACAC
CTATAGCCTCTAACAAAAGAATGAGACATTAGGCTGAATATAGATCGACA
AACTATAAAAAAACCCATTAACTTGATTAAATACTTGATTTCTGAGTTAA
GTTTATGAGGCTAATtcaccttttcaaccgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069388-exon-scaffold_498-1491911889:279910..282092 | TCONS_00069388-exon-scaffold_498-1491911889:279910..282092 | Clytia hemisphaerica | exon |
| TCONS_00069388-exon-scaffold_498-1510915933:279910..282092 | TCONS_00069388-exon-scaffold_498-1510915933:279910..282092 | Clytia hemisphaerica | exon |
| TCONS_00069388-exon-scaffold_498-1575043694:279910..282092 | TCONS_00069388-exon-scaffold_498-1575043694:279910..282092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:279910..282092 . |
Blast
The following BLAST results are available for this feature:
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