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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069386 ID=TCONS_00069386|Name=TCONS_00069386|organism=Clytia hemisphaerica|type=transcript|length=1255bp
GATTTTTACACTCACCAGCTAAAGAAAATCTTACTGGGTCTGTGCGAAGG
GGATGCTTAATTTTGTCACAATCTTTCATATACTTACGATTTagtaaaat
atttgtaaaatactgtaaataattttctttttcttttttttttcgaatat
tttcatttttcttcttgtagaaccaaaataaaattaCTTGAATAAATACA
TTACAGATAttatacaacttttttcacAAATAATCTTACAATAAATTTTA
CAGTATCAAATATTGTTTTTAACGTCACAACCCCGTACCCTGTCAACCAA
TAACTGTCCCagtaagaaaaaaaatctgcatatTTTCATCCTATTCGGAG
ACCAGACTGAACGCACATCCTCACTGGGAGAATCATAGCAtagatttgaa
aatttccaacttCGTCGTCGTGTATaacaggctttatttacgttactgat
ggacTCTATATCTGATACTATCAGTAAGCACAAGAAGCCAGTGCTACGGA
GAGAACGAGGTTAAAGAATGGCCACCTTTTTTTGAGTAGTGGACAATAGA
GCTTTATTTCTCCACCATTTAAAATCGTGATTTCTAATCTCATTGAGCTT
TTTAATTGAGCTTTTTCATTCAAACCTTAGTTGctaaattatatttcaca
ggatTTTCGGAGACATACAGGGATATTTTTCTGTTTATTGCAATGCAATT
CTTTTAGTCCATTTCATAACAGTTTTAATGCGTTTATCATGTACCGGCAC
ACGAAATGCCTGTTCACCCGGGGTTCTTATAGACCGAGATGAAGCACTCC
AAAATCCATCATTATACCGAGTTTCTAACTCACTACAATGTCCTGTTATA
GAGTTAAACTCGACAAATTCTGAAATCATTCCATTCctatatttagattt
ttcatttttcgcttTTACCAAGCAATTATCGGATTTTTTGATTCCACATT
CGGGGAAAATACATTTCGATCGGGTTTCTTTATCACCCGATTCTtgattt
ttgtctttattgaaatttATTCTTGCGTAAATGCTCATTGAGAGTCCATA
AGAGTTCTTGCGTTCTGGTAACAATTGATCCTTGATGTTTTTATTATGGC
ATTTGAAAATCGGTTTATCAACTCGGCAATACCCGCATCTGCCAGCTTCG
TTCGGTAGGTAAATTATCAATGATGATGTTTGAGGTTGATGGCCTTGAAC
TTCCATCATTCTCACCACATGTGATCTTTCGggaaaaaatttggatttta
gcttc Run BLAST on NCBI protein sequence of TCONS_00069386-protein >TCONS_00069386-protein ID=TCONS_00069386-protein|Name=TCONS_00069386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
KLKSKFFPERSHVVRMMEVQGHQPQTSSLIIYLPNEAGRCGYCRVDKPIF
KCHNKNIKDQLLPERKNSYGLSMSIYARINFNKDKNQESGDKETRSKCIF
PECGIKKSDNCLVKAKNEKSKYRNGMISEFVEFNSITGHCSELETRYNDG
FWSASSRSIRTPGEQAFRVPVHDKRIKTVMKWTKRIALQ Run BLAST on NCBI transcript from alignment at scaffold_498:269948..271202 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069386 ID=TCONS_00069386|Name=TCONS_00069386|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_498:269948..271202 (Clytia hemisphaerica)
gaagctaaaatccaaattttttccCGAAAGATCACATGTGGTGAGAATGA
TGGAAGTTCAAGGCCATCAACCTCAAACATCATCATTGATAATTTACCTA
CCGAACGAAGCTGGCAGATGCGGGTATTGCCGAGTTGATAAACCGATTTT
CAAATGCCATAATAAAAACATCAAGGATCAATTGTTACCAGAACGCAAGA
ACTCTTATGGACTCTCAATGAGCATTTACGCAAGAATaaatttcaataaa
gacaaaaatcaAGAATCGGGTGATAAAGAAACCCGATCGAAATGTATTTT
CCCCGAATGTGGAATCAAAAAATCCGATAATTGCTTGGTAAaagcgaaaa
atgaaaaatctaaatatagGAATGGAATGATTTCAGAATTTGTCGAGTTT
AACTCTATAACAGGACATTGTAGTGAGTTAGAAACTCGGTATAATGATGG
ATTTTGGAGTGCTTCATCTCGGTCTATAAGAACCCCGGGTGAACAGGCAT
TTCGTGTGCCGGTACATGATAAACGCATTAAAACTGTTATGAAATGGACT
AAAAGAATTGCATTGCAATAAACAGAAAAATATCCCTGTATGTCTCCGAA
AatcctgtgaaatataatttagCAACTAAGGTTTGAATGAAAAAGCTCAA
TTAAAAAGCTCAATGAGATTAGAAATCACGATTTTAAATGGTGGAGAAAT
AAAGCTCTATTGTCCACTACTCAAAAAAAGGTGGCCATTCTTTAACCTCG
TTCTCTCCGTAGCACTGGCTTCTTGTGCTTACTGATAGTATCAGATATAG
AgtccatcagtaacgtaaataaagcctgttATACACGACGACGaagttgg
aaattttcaaatctaTGCTATGATTCTCCCAGTGAGGATGTGCGTTCAGT
CTGGTCTCCGAATAGGATGAAAatatgcagattttttttcttactGGGAC
AGTTATTGGTTGACAGGGTACGGGGTTGTGACGTTAAAAACAATATTTGA
TACTGTAAAATTTATTGTAAGATTATTTgtgaaaaaagttgtataaTATC
TGTAATGTATTTATTCAAGtaattttattttggttctacaagaagaaaaa
tgaaaatattcgaaaaaaaaaagaaaaagaaaattatttacagtatttta
caaatattttactAAATCGTAAGTATATGAAAGATTGTGACAAAATTAAG
CATCCCCTTCGCACAGACCCAGTAAGATTTTCTTTAGCTGGTGAGTGTAA
AAATC Coding sequence (CDS) from alignment at scaffold_498:269948..271202 >TCONS_00069386 ID=TCONS_00069386|Name=TCONS_00069386|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_498:269948..271202 (Clytia hemisphaerica)
aagctaaaatccaaattttttccCGAAAGATCACATGTGGTGAGAATGAT
GGAAGTTCAAGGCCATCAACCTCAAACATCATCATTGATAATTTACCTAC
CGAACGAAGCTGGCAGATGCGGGTATTGCCGAGTTGATAAACCGATTTTC
AAATGCCATAATAAAAACATCAAGGATCAATTGTTACCAGAACGCAAGAA
CTCTTATGGACTCTCAATGAGCATTTACGCAAGAATaaatttcaataaag
acaaaaatcaAGAATCGGGTGATAAAGAAACCCGATCGAAATGTATTTTC
CCCGAATGTGGAATCAAAAAATCCGATAATTGCTTGGTAAaagcgaaaaa
tgaaaaatctaaatatagGAATGGAATGATTTCAGAATTTGTCGAGTTTA
ACTCTATAACAGGACATTGTAGTGAGTTAGAAACTCGGTATAATGATGGA
TTTTGGAGTGCTTCATCTCGGTCTATAAGAACCCCGGGTGAACAGGCATT
TCGTGTGCCGGTACATGATAAACGCATTAAAACTGTTATGAAATGGACTA
AAAGAATTGCATTGCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069386-exon-scaffold_498-1491911889:269948..271202 | TCONS_00069386-exon-scaffold_498-1491911889:269948..271202 | Clytia hemisphaerica | exon |
| TCONS_00069386-exon-scaffold_498-1510915933:269948..271202 | TCONS_00069386-exon-scaffold_498-1510915933:269948..271202 | Clytia hemisphaerica | exon |
| TCONS_00069386-exon-scaffold_498-1575043694:269948..271202 | TCONS_00069386-exon-scaffold_498-1575043694:269948..271202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:269948..271202 . |
Blast
The following BLAST results are available for this feature:
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