|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069384 ID=TCONS_00069384|Name=TCONS_00069384|organism=Clytia hemisphaerica|type=transcript|length=814bp
ctggTTCGTTCAAGTATCTTGGACTCAATATCACACAGACAAAGAATGGA
ATCCAAATTGAACAAACGCGATACTGTCAATCAATAAAGCCTATTCCTGT
CAGCAAAGAGGGAAAAATCCAAAGGAATCTACCACTAGGAAGTGGTGAAA
CAAAGCAGCTACGTATGCTGGTTGGTCAGATGAATTGGGCTGCTACGCAA
TCTAGACCAGATATTTTGTTTGATTGCTGTGAACTTGCATCAAAGATGAA
GAATGCTACTGTAGCCGACATCCTAGATGCTAATAAAGTGTTGAAGAAAT
TACAAAATGATGTCATGATCAAGCTTCCACCATTGAAAGACATCAATCAC
CTAAATTTGTTGTGCATTCTGATGCATCCTATGCCAACCTTAATGACAGA
GGATCACAAGGAGGCTATATCATACTGCTATCAGACGATATCTCAAAGAA
ACTGTCACCAATTGCTTGGCAGTCAAAGAGGATCAAAACAAAAGAGTGGT
AAAGAGCACTCTTGCAGCTGAAATGCTGGCACTTGTAGAAGCAGCTGAAT
CGTGCTATTGGCTCCAAAGCATTCTCAATGAGGTTTTGGGAACTGAAGGT
TGTAGAATTGAGTGTTATATTGACAGTCAATCACTGTATAATGCTGTTAA
TTCAACAACGTCGTTGTCTGATAAAAGACTACGAGTTGACGTGGCAATTA
TTCGTGAAATGTTGCAAAATAATGAGATTTCAAAACTTGctcaatggaaa
aaagtttgaacacattgcatacggaaaaaatgaacaaGTACACTCAGTCT
ACAAATCAGATGTA Run BLAST on NCBI protein sequence of TCONS_00069384-protein >TCONS_00069384-protein ID=TCONS_00069384-protein|Name=TCONS_00069384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
GSFKYLGLNITQTKNGIQIEQTRYCQSIKPIPVSKEGKIQRNLPLGSGET
KQLRMLVGQMNWAATQSRPDILFDCCELASKMKNATVADILDANKVLKKL
QNDVMIKLPPLKDINHLNLLCILMHPMPTLMTEDHKEAISYCYQTISQRN
CHQLLGSQRGSKQKSGKEHSCS Run BLAST on NCBI transcript from alignment at scaffold_498:174502..175315 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069384 ID=TCONS_00069384|Name=TCONS_00069384|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_498:174502..175315 (Clytia hemisphaerica)
TACATCTGATTTGTAGACTGAGTGTACttgttcattttttccgtatgcaa
tgtgttcaaacttttttccattgagCAAGTTTTGAAATCTCATTATTTTG
CAACATTTCACGAATAATTGCCACGTCAACTCGTAGTCTTTTATCAGACA
ACGACGTTGTTGAATTAACAGCATTATACAGTGATTGACTGTCAATATAA
CACTCAATTCTACAACCTTCAGTTCCCAAAACCTCATTGAGAATGCTTTG
GAGCCAATAGCACGATTCAGCTGCTTCTACAAGTGCCAGCATTTCAGCTG
CAAGAGTGCTCTTTACCACTCTTTTGTTTTGATCCTCTTTGACTGCCAAG
CAATTGGTGACAGTTTCTTTGAGATATCGTCTGATAGCAGTATGATATAG
CCTCCTTGTGATCCTCTGTCATTAAGGTTGGCATAGGATGCATCAGAATG
CACAACAAATTTAGGTGATTGATGTCTTTCAATGGTGGAAGCTTGATCAT
GACATCATTTTGTAATTTCTTCAACACTTTATTAGCATCTAGGATGTCGG
CTACAGTAGCATTCTTCATCTTTGATGCAAGTTCACAGCAATCAAACAAA
ATATCTGGTCTAGATTGCGTAGCAGCCCAATTCATCTGACCAACCAGCAT
ACGTAGCTGCTTTGTTTCACCACTTCCTAGTGGTAGATTCCTTTGGATTT
TTCCCTCTTTGCTGACAGGAATAGGCTTTATTGATTGACAGTATCGCGTT
TGTTCAATTTGGATTCCATTCTTTGTCTGTGTGATATTGAGTCCAAGATA
CTTGAACGAAccag Coding sequence (CDS) from alignment at scaffold_498:174502..175315 >TCONS_00069384 ID=TCONS_00069384|Name=TCONS_00069384|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_498:174502..175315 (Clytia hemisphaerica)
TCAGCTGCAAGAGTGCTCTTTACCACTCTTTTGTTTTGATCCTCTTTGAC
TGCCAAGCAATTGGTGACAGTTTCTTTGAGATATCGTCTGATAGCAGTAT
GATATAGCCTCCTTGTGATCCTCTGTCATTAAGGTTGGCATAGGATGCAT
CAGAATGCACAACAAATTTAGGTGATTGATGTCTTTCAATGGTGGAAGCT
TGATCATGACATCATTTTGTAATTTCTTCAACACTTTATTAGCATCTAGG
ATGTCGGCTACAGTAGCATTCTTCATCTTTGATGCAAGTTCACAGCAATC
AAACAAAATATCTGGTCTAGATTGCGTAGCAGCCCAATTCATCTGACCAA
CCAGCATACGTAGCTGCTTTGTTTCACCACTTCCTAGTGGTAGATTCCTT
TGGATTTTTCCCTCTTTGCTGACAGGAATAGGCTTTATTGATTGACAGTA
TCGCGTTTGTTCAATTTGGATTCCATTCTTTGTCTGTGTGATATTGAGTC
CAAGATACTTGAACGAAcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069384-exon-scaffold_498-1491911889:174502..175315 | TCONS_00069384-exon-scaffold_498-1491911889:174502..175315 | Clytia hemisphaerica | exon |
| TCONS_00069384-exon-scaffold_498-1510915933:174502..175315 | TCONS_00069384-exon-scaffold_498-1510915933:174502..175315 | Clytia hemisphaerica | exon |
| TCONS_00069384-exon-scaffold_498-1575043694:174502..175315 | TCONS_00069384-exon-scaffold_498-1575043694:174502..175315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:174502..175315 . |
Blast
The following BLAST results are available for this feature:
|
