TCONS_00069383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069383
Unique NameTCONS_00069383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069383 ID=TCONS_00069383|Name=TCONS_00069383|organism=Clytia hemisphaerica|type=transcript|length=1019bp
NAAGGAGTTGATTTTCTTGAAGAAAATGATACATTCTTGACTGATGATAA
CAGCCTAACTTGTCATCTTTTCTGGCATCAAACTGTCAATTTAACCGAAC
TTGGGCATTATGATCGAGTCTTGAAATTATATGATGATAAAATTCTACCC
ACATTCAAGCAGACCTCCAACCCATTTAATCTCAATGATGGTGTACAAGC
ATTGCAACGTTTAGAATTCGAAGGTATCAACGTTGGTGACAGATGGGAAG
AATTGTACTCTGTTTACAAACCAATGAGCAACTCTAATGAGCTTGTCTAC
GATGATATGCATTTGACAGCTGCAATGATTAAATCCAAAACAGGCCGTGA
AAGCAAATCTAATTTCTTCGAATCAATGGATGACCATCTTAATAAAGGTC
TTGATACAACTTATGAAGACGTTGGTAAACGCATTGGATTCCCTTTCGCT
AAAGGTATTGCTGCTTATTGTGAAGATAACTTTGAGGAGGCTTGTAATCT
CTTTATACCGGTTTACAAAGACATTTGGGAACTTGGTGGAAGCAAAGCCC
AACAAGACATCTTTAATCAGTATGTTATCAATGCTTGTGTTCGATCGCCT
AATCAGTTTCACAGACGTATGGCTAGATCGTTATTACATGAGCGCAAATT
GTTTAGACCAAATTCGTTGCTTACTGATCGAGTACTGGCAAAACTGGACG
TGGATcactaaaactttttaaatcatCATCTTATTAACAGGACTTTTTAC
TAAAAATTTAGTGTTAATGATAATTACACCACTTTTAATTTCTAGGGTTT
ATAATCTACAATCGAATTTCATACATTTTTAGACGCATCCAACCAATTAA
TCTATTTTCTAAAAGTCAGTGCTATAATCTCACTCGGACATTATGTTGTA
AACTAAGGGTTTTTTAGATAAAagattaaaactttaaaattaaaaacttt
ttaatacCCATATTTGATGGAAGTAGTATTTCATTGTATacatattaaaa
tattttcatacaaTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00069383-protein

>TCONS_00069383-protein ID=TCONS_00069383-protein|Name=TCONS_00069383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
XGVDFLEENDTFLTDDNSLTCHLFWHQTVNLTELGHYDRVLKLYDDKILP
TFKQTSNPFNLNDGVQALQRLEFEGINVGDRWEELYSVYKPMSNSNELVY
DDMHLTAAMIKSKTGRESKSNFFESMDDHLNKGLDTTYEDVGKRIGFPFA
KGIAAYCEDNFEEACNLFIPVYKDIWELGGSKAQQDIFNQYVINACVRSP
NQFHRRMARSLLHERKLFRPNSLLTDRVLAKLDVDH
Run BLAST on NCBI

transcript from alignment at scaffold_498:155425..156443

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069383 ID=TCONS_00069383|Name=TCONS_00069383|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at scaffold_498:155425..156443 (Clytia hemisphaerica)
GTTGAAttgtatgaaaatattttaatatgtATACAATGAAATACTACTTC
CATCAAATATGGgtattaaaaagtttttaattttaaagttttaatctTTT
ATCTAAAAAACCCTTAGTTTACAACATAATGTCCGAGTGAGATTATAGCA
CTGACTTTTAGAAAATAGATTAATTGGTTGGATGCGTCTAAAAATGTATG
AAATTCGATTGTAGATTATAAACCCTAGAAATTAAAAGTGGTGTAATTAT
CATTAACACTAAATTTTTAGTAAAAAGTCCTGTTAATAAGATGatgattt
aaaaagttttagtgATCCACGTCCAGTTTTGCCAGTACTCGATCAGTAAG
CAACGAATTTGGTCTAAACAATTTGCGCTCATGTAATAACGATCTAGCCA
TACGTCTGTGAAACTGATTAGGCGATCGAACACAAGCATTGATAACATAC
TGATTAAAGATGTCTTGTTGGGCTTTGCTTCCACCAAGTTCCCAAATGTC
TTTGTAAACCGGTATAAAGAGATTACAAGCCTCCTCAAAGTTATCTTCAC
AATAAGCAGCAATACCTTTAGCGAAAGGGAATCCAATGCGTTTACCAACG
TCTTCATAAGTTGTATCAAGACCTTTATTAAGATGGTCATCCATTGATTC
GAAGAAATTAGATTTGCTTTCACGGCCTGTTTTGGATTTAATCATTGCAG
CTGTCAAATGCATATCATCGTAGACAAGCTCATTAGAGTTGCTCATTGGT
TTGTAAACAGAGTACAATTCTTCCCATCTGTCACCAACGTTGATACCTTC
GAATTCTAAACGTTGCAATGCTTGTACACCATCATTGAGATTAAATGGGT
TGGAGGTCTGCTTGAATGTGGGTAGAATTTTATCATCATATAATTTCAAG
ACTCGATCATAATGCCCAAGTTCGGTTAAATTGACAGTTTGATGCCAGAA
AAGATGACAAGTTAGGCTGTTATCATCAGTCAAGAATGTATCATTTTCTT
CAAGAAAATCAACTCCTTN

Coding sequence (CDS) from alignment at scaffold_498:155425..156443

>TCONS_00069383 ID=TCONS_00069383|Name=TCONS_00069383|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_498:155425..156443 (Clytia hemisphaerica)
ttagtgATCCACGTCCAGTTTTGCCAGTACTCGATCAGTAAGCAACGAAT
TTGGTCTAAACAATTTGCGCTCATGTAATAACGATCTAGCCATACGTCTG
TGAAACTGATTAGGCGATCGAACACAAGCATTGATAACATACTGATTAAA
GATGTCTTGTTGGGCTTTGCTTCCACCAAGTTCCCAAATGTCTTTGTAAA
CCGGTATAAAGAGATTACAAGCCTCCTCAAAGTTATCTTCACAATAAGCA
GCAATACCTTTAGCGAAAGGGAATCCAATGCGTTTACCAACGTCTTCATA
AGTTGTATCAAGACCTTTATTAAGATGGTCATCCATTGATTCGAAGAAAT
TAGATTTGCTTTCACGGCCTGTTTTGGATTTAATCATTGCAGCTGTCAAA
TGCATATCATCGTAGACAAGCTCATTAGAGTTGCTCATTGGTTTGTAAAC
AGAGTACAATTCTTCCCATCTGTCACCAACGTTGATACCTTCGAATTCTA
AACGTTGCAATGCTTGTACACCATCATTGAGATTAAATGGGTTGGAGGTC
TGCTTGAATGTGGGTAGAATTTTATCATCATATAATTTCAAGACTCGATC
ATAATGCCCAAGTTCGGTTAAATTGACAGTTTGATGCCAGAAAAGATGAC
AAGTTAGGCTGTTATCATCAGTCAAGAATGTATCATTTTCTTCAAGAAAA
TCAACTCCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043236XLOC_043236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069383-exon-scaffold_498-1491911889:155425..156443TCONS_00069383-exon-scaffold_498-1491911889:155425..156443Clytia hemisphaericaexon
TCONS_00069383-exon-scaffold_498-1510915933:155425..156443TCONS_00069383-exon-scaffold_498-1510915933:155425..156443Clytia hemisphaericaexon
TCONS_00069383-exon-scaffold_498-1575043694:155425..156443TCONS_00069383-exon-scaffold_498-1575043694:155425..156443Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069383-proteinTCONS_00069383-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:155425..156443 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.04116	5.92627	15.9898	15.2322	8.70844	5.37288	11.5994	11.8294	13.1188	12.8997	13.1692	7.9797	9.15808	7.01846	12.6557	12.5379	12.1677	10.727	3.8114	6.85907	7.13523	6.46375	8.8609	9.046	8.555	10.9717	9.79643	11.0304	10.3248	9.18088
Blast
[Close]
BLAST of TCONS_00069383 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.148e-40
Identity = 71/235 (30.21%), Postives = 127/235 (54.04%), Query Frame = 1 
Query:    4 GVDFLEENDTFLTDDNSLTCHLFWHQTVNLTELGHYDRVLKLYDDKILPTFKQTSNPFNLNDGVQALQRLEFEGINVGDRWEELYSVYKPMSNSNELVYDDMHLTAAMIKSKTGRESKSNFFESMDDHLNKGLDTTYEDVGKRIGFPFAKGIAAYCEDNFEEACNLFIPVYKDIWELGGSKAQQDIFNQYVINACVRSPNQFHRRMARSLLHERKLFRPNSLLTDRVLAKLDVDH 708
            G++F++ ++TF  D + L CH +WH  + L E G Y+  L +YD  ILP+ +      ++ D    L RL+ EG++VG RW+++  V +  S  + L+++D H   A + +   + ++     ++ D      +     + + +G P  + +    + N +    L +P+   I +LGGS AQ+D+FNQ +I+A +   +  H+ +ARSLL ER   +PNS LT+R++ K    H
Sbjct:  233 GLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQ-ELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVH 466
The following BLAST results are available for this feature:
BLAST of TCONS_00069383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC387.148e-4030.21Tetratricopeptide repeat protein 38 OS=Homo sapien... [more]
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