TCONS_00069359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069359
Unique NameTCONS_00069359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069359 ID=TCONS_00069359|Name=TCONS_00069359|organism=Clytia hemisphaerica|type=transcript|length=1433bp
ccgatgtagaaattttcttctgacacgctaaagctctgaaggtcgggaaa
attttcaatatattggcccgctcctttagagctttagcgtgggcggccgc
caatacgccatcggaatatcagataagataGAGATAGGCTACAGCGTCCG
CCGTTTACAGTCTGCGCGGTTTATAATCGTGATGTATACCGGTCTTTAGA
AATAGGGCCTTATTTcgaagtttgttttgatttttcgggTCGACCACGTG
CTTTCTTTGGATTGCTCCTGCTGAAACTTTTCTTGTGAGTTTTTGTTGCA
TTTTAACTACCAAAACTTAGTAAAAAAGGAAGAATGAGTGACGATGAAGG
ACCTAAAAAAGCAAAGATACCAAGAGTGTCTAAACCAAAAGACAGAGACA
AGCGTTTAATCGTTATTTTGGAGTGTGCTTCGTTAGAAACTGTGAAGaat
GGTAAAACGTTTGAGCTTTTGAACTGTGATGATCATAAAGGCATTTTGAG
GAAGAAGGGAAATGACCCTGCAAACTACCGACCAGACATAACCCACCAAT
GTTTACTGATGTTGATGGACAGTCCCTTGAATCGTGCTGGTCTTCTTCAA
GTTTATATCCACACAGAAAAGAACGTTCTAATTGAGATCAACCCACAAAC
TCGAATTCCAAGAACTTATAATAGATTTTCTGGTTTGATGGtCCAATTGC
TTCACAAATTGAGTATCCACGCTTCAAATGGTCCCATCAAACTAATGAAG
GTAATCAAAAACCCAATAACAGATCATCTTCCAGTTGGCTGCAAAAAACT
AGTGATGTCATACAAAGCAAAGAAATGTACGCCTCCGAGAGAACTGGTAC
CTACTGATGAACCAATCGTTTTCGTTATCGGTGCTATGGCTCATGGAAAG
GTCGATGCAAGTTATGGTGAGGAAGATATAGCGATCAGTGAATACCCACT
CTCCGCAGCTCTAACGTGTGCCAAAGTATGTAGTGCCTTTGAAGAACAAT
GGGGAATCACTTAACATTGCATCGAGTCTTTTAGCAAGATCTTTTCAATA
TTACATTGATAGCTTATGTTTCAAGTAGTGGCTGTGGTTAGACAATTAAT
GAAGCAGCAGATCCATTATGGAAAGGCTCTGGTATACTTATTGGATATCT
TGATTGAAATGGCGACGGGCAATATTGTAAATGTTGGATAGAACTTTTAA
ATAATTGTGAACCATGAATTTATGATCTCTTTAAGTGATgatgaaaataa
cttttgtaGATGGTTAAGAATTTATTTACATATCGTACATTACTTTTAGC
CTGCTTCTCACTCAAACATGCTTCTTCTAAATTGATTGAAGCTAAATAAA
GCTCTAGATCAATTTTTGAGAGTTTTGTCTTTAACAAGATAATACATCAA
TTATACTTTGTCAGAGACATTACAACATTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00069359-protein

>TCONS_00069359-protein ID=TCONS_00069359-protein|Name=TCONS_00069359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MSDDEGPKKAKIPRVSKPKDRDKRLIVILECASLETVKNGKTFELLNCDD
HKGILRKKGNDPANYRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI
EINPQTRIPRTYNRFSGLMVQLLHKLSIHASNGPIKLMKVIKNPITDHLP
VGCKKLVMSYKAKKCTPPRELVPTDEPIVFVIGAMAHGKVDASYGEEDIA
ISEYPLSAALTCAKVCSAFEEQWGIT
Run BLAST on NCBI

transcript from alignment at scaffold_498:350655..359168-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069359 ID=TCONS_00069359|Name=TCONS_00069359|organism=Clytia hemisphaerica|type=transcript|length=8514bp|location=Sequence derived from alignment at scaffold_498:350655..359168- (Clytia hemisphaerica)
CCGATGTAGAAATTTTCTTCTGACACGCTAAAGCTCTGAAGGTCGGGAAA
ATTTTCAATATATTGGCCCGCTCCTTTAGAGCTTTAGCGTGGGCGGCCGC
CAATACGCCATCGGAATATCAGATAAGATAGAGATAGGCTACAGCGTCCG
CCGTTTACAGTCTGCGCGGTTTATAATCGTGATGTATACCGGTCTTTAGA
AATAGGGCCTTATTTCGAAGTTTGTTTTGATTTTTCGGGTCGACCACGTG
CTTTCTTTGGATTGCTCCTGCTGAAACTTTTCTTGTGAGTTTTTGTTGCA
TTTTAACTACCAAAACTTAGTAAAAAAGGAAGAATGAGTGACGATGAAGG
ACCTAAAAAAGCAAAGATACCAAGAGTGTCTAAACCAAAAGACAGAGACA
AGCGTTTAATCGTTATTTTGGAGTGTGCTTCGTTAGAAACTGTGAAGGTA
TTTTTTGCGTTATTTTACATCTGTCTTATTATTTACATCTTGACTTTAAA
CTTAATTGGACTGTTGGTTTCTAGCTACTTGTCAACCTTAGAAGGTACCT
GGATGTGCCAAAATACTTGATCTATGACAGCTCAGTTCGGCAAATTGCAC
AGATCTGCAGAGGACCCTGCCGACGCACCGGACTTAACGAACACCGGACA
CTCGAAAGTCCGGTGTAAAATAAGAATTTTTTTTACCACCGGACAATCTC
TACACCGGACTTAAAGAACTCGGATGTCCGGTGTCGGAGAAGGATATTTT
TTTCCACCGAACAATCAAAACACTGGACATGACCAGTCCGGTGCGTCCGG
TGTTTCTTAATTTTTTGTTTCATAAATGTCCGGCGTCCAAAATTACCTGT
ATGCAACACCGGACTGACACCGGACTTATTGCGTCCAGTGTAGCGAAAGG
ATTTTTGCCACCGGACAAATACACCGGACAGTCCGGTGCGTCGGCAGGGT
CCTATCTGCAGCGCTGCGAAATTCTGCATCTTTAGCATTGTGATATTCCG
CAACGTTGCGAAAATTCCGCGGCTTTATTACTGCTGCATAGTTTCGCAGC
TCTGGCCTTTGGACCAAAATCAGCATCGCAGGGCCTGGACCGGGGTCCCA
AAATAATGTGCATTTTGAAGAACAACCCAAAAGGAAACTTTTCACCCTTT
TAATTTTAATTTCCTACCTAGCGATTATTCACAATCATTCTTGGAAGAAA
TGCTACTTCGTTCAAAAAAGCGCTACTTTGTTCAAGAAAGCAAGTTTTTG
CTTGATTTTGCATGTGTTTAGAAGAAAATTGATAGGCTCATAATTTTTAA
AATCACAAGCTTCAATTGGAAGCGTTGCGTAAAATAGCAGCGCAACCCTG
GGAAAACGCTGCGAAAAACTGCAACATTGCGGAATATTGCAACGTTGCGG
ATCTATGCAATTTGCCGAACTGAGCTTGGGAAATACAGTGTGTTTTGTGT
TTTTGAAACAAATAGTAGCTTTCACATTCTTTTTACTCCCTCCTTTTCTA
GCTAATTCCCGCCGCGTGTTAGTCAGTCGAGGATTACTGTATGCCCTAAA
TAAGAGATATACTCCAGTGAGGCTGGAACTTTGATTTTTGAGGATTACGA
TTTTACCAGTTTTTTAGCAATTTTTGCCTCGCTAACCCAAATCTCGCAAC
CTCTTTACCTTAAAGGAAGATCGAAATTAGAGTTTTTCAGCGTATGAAAA
AAACACAAAGCAAAAATTTTTCCATCTTCACAGGATCGATTCTCAACAAC
AAAATACATCTTTTGTTCTTTGGATTTGTTTCTGACGTTTTTCCTTCAAA
GAATATCGATCACTTTCCTTTTTCCCTCAAGCGCGCAAAAAAAAAATGAT
TAGCTCGCTTTCTCGCGCGGGCAAAAAAAGATGAAGCGGCAATCTTGCAC
TGAGGGTGTTACTTAGTTTCCGCCCTATTTTGCGCCCACAATAGAATGGT
CCAAATACGGGGGTATTCCAAATGATAAACAATGTCGTTCTGTAAGTGTT
TATTTTCCAAGAGATACAAATAGTATATTGAATATTATTAACTTATTTAT
TTAAGTATTTATGAGCCCAAAAATTTTAATATCTGGTTAAATAAAAAACA
TATGATATCAGTTCTGTTTTTCCTCAAACCCCCGGGAAAAGTTTTTTGGC
CGACTTAGCTATTTTACAAATTTCGGAAAAGAACTCCCATAGGAATTCCG
ATACATAACCCGATTGGTTCATTTCGGAACGGCTTCAAGAAAGTCATAAT
GGCAGATGATTTTAAAAGTTTCTGAGGAAATGTTTGGAATTTATCGATGG
TGATGGCTTGTTGATTCTTTAAAGAAAAAAGATAACAGGTATAGCTTTTT
CTAATCCTGGAATATCGAGGTTCCAGCTACACTGTACTCTATTTAAGAGA
AGGTCTCTTAAGTAGGAGATTTCTTTCTCTTAACTAGGAGACTATTCTTT
CTTTGTTAATTTTTGGCCTTCTCATCATTTTGCGCAAGTTTTGAACTTCA
TAGAGCGACTCAGCACGTTTTTTTCTCCCTTCTAGCAAAATTTGGTTGAG
TTCTGCTTTTGTTTCGGGGACCTAGGATGGCTAGGGTCCATCAATCTAAA
GGCCGATCTACATCATGAGAATTTCGTGAAAAGTAATAATATAGTTCGGG
CCATATTTAAGAAACGCGTTCAAGCGTGGTCAAAAAGCGGGTCAAACAGA
AAGTGAGTCGCTCTTGTCTCTCCTAAATAAGGGGGTTTGAGAAAAAACGC
GTTTTGAAGGCCGAGGGTGTTTCTTCATTATTTTAAAAATTACGTCAACA
CATGCAAATGAGGCTATTTATGGTTTTTCGAAGTTTGAAAAAGAATGAAA
AGGTATTTTATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTAGTTTA
GGTAACGTTCTCTTAAATAAGAGACTGAAAATCTCCTAAATAAGGTAATC
CTCTAACTTGGGTATTCTCTTATTTAGGGCATAATCCTCGATTGTTAGTG
TAGACACAACTTTACTCCGGGGAAATGAAGGGTTTTCATTGGTCTAAAAT
CATGGATGGTCACGTGACCAAAATTTTTATCTAGGGAAATGCTGTGGCGG
CAATGTTTTGTTTTAGTGAGATTGACCATTTTGTTGTTTTGATTTGAGCG
GGCAAAATTTCTGTACAAACCAAAATATGGCTTCGTTGGAATACCAGTTG
AAACACTTGTGTAGGCTAGACTTACCTCTTTTCTCTTTCTATTCCAACAA
TAAAAAATGCTTATATACATAGTTGTCACTAGTCTGGAGATCCATATTCC
AGTATACACCTAACTCTTCACACAAAAATTACGGGAAACGCATGTTTAGA
CTTTGTACCCTATGCTGCACTCAAGCACTTAAGCCAAAGTCCCGCAAAGG
CGGGACAAAAATCAGTTTTTTGAAGTTTGAAAAAAAACGCCACATAGAAG
ATCTTTCAAATTCAGTATGTGAATAGAGCAGTAAAAAATACAACTTTTCT
ATTTTTCCTTTTTTTTGCAAAAGTTCTAGGAATGAAAATAAAGGGATAAT
GATAATTGAATACTATCCATTGATGACCCGCGGCACTATCGTAAAGCTAG
AATCTCTTCGCGTACTCTTTGCTTGAGAAAATGATTGACAGATTGAAGTT
TTTCACCCGCGCAGGAGTTTGTGGAGCGTTCTCGGCTCAATCCTCGGACC
GCACTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTATTAATTTTGTTAGA
TCTGACAAATTGATGTTTGTAAGTGCACTTTATAGTTTTGATTCCCATTG
AAGAATCATATTCTGGTTTTCACGTTATTAGATGCTGTTTTAGAGCTTTA
GGTCTACACTGTATTCTCTATTCAAACTTACACCACATATAAGCAAAAAA
ATGCGCCACAAAACTTCTAAAGGAATTTATGAAAAAATAACCTGGCGCTT
TTTATATACCATATATACAGAAGATGAAATAGTTTGAGCCAAGCCAACCT
TGAAAACTAATTTGAAGATCAATTTCCCAAATAGACAATTTACAGGGGAG
ACAGAACCCACCTAGATCCGCACACTGCCGAATAGCCTATTTCCCGGAAA
TTTTGCCGGACCTAAAAAAACTGACCCATATGTGCATGAATGAACATGTG
CGGAATTATTTTTACTTTAGCGTATAAACAAGGCCTTAAAAATCAAAGCG
CTGTTTCAGGAATTAAAATGACAAAATTTGGTTGGTTGATATTCTGGCTG
CTGCACGTTTGCAATCTGTCATTTTGTCTCATTTTAAGTTTTCAAGTTTT
AATTGTCTTGGGATCTTGAAATTGATTCAGGTACTCTCATCCTTGGTGTT
GCAAATACATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAACTTGATT
TCCTAGTGTGACTAACTGTTTTGATGCCAGAGTATTTCGTTATTCAATAT
TACATCCTGACTAGCCTGGGTATTCAGACTAAAAATTTCAGAAAAAAACT
CTTACCTCAACATACAAAGTTCTAAAATTTTAGAGTTTGGTACAACTAAA
AAAGTCTGGTGCAGTTTCAATGACACAGTCTGTGAGTGAACCCTTGTTGA
CAGAATCAGACAGACACACATAATTACTTACCAGAAAGACCTCTTTTATA
AACTTAAAAGTCTTTCAAAACTACTTTAAACTACACATTCATTCACACTG
ATTTCCATCAGCCATTTTGTTTAGAAATGAACCTGTGTTTTCATTTTCAT
TTGTTTATCTTTTTTTGCAATGTCAGCCTTTTCCATAAATTATGTGCTCA
CATAGAAAAATATTGGAAACCCCATGAAAATTCTGTTCAGTGACTTGCCG
CGAATTGACCAATTAGATGCACTCGCATATGCAAGGACAATTATCTCTGT
ACGCAAGTTACTTGGACCAGACTTGTAGACAAGAAACAAAACAGACAATG
CTAGACAATGAAATAGTTGACGGTCCTGGACGGTCTGGATATCGAGGCTA
CATCCTGACTAGCAAAAGGTCTATTATTAGATGAAATGATACTAAATACA
CATCACTTCTACATCAAGCATCAAGCAGAGAGGCATCAAGTACCATTTTG
AGAATCTTTGGTATAACCTGGCTGGGGGTTGAACCCACAACCTTGCGAAC
TGTAGCGAGATGCTCTACCACTTCACTATGGTAGCTTGTGATGTGCATGC
TTAGTATTGGCAAATTTACTCATTATGAATAACTAATGAAGAGAAAAAGT
GCTATCACTCAAAAGAGGCTGGTTATGCTCCGTATGGCTTTCTAAGCGGT
TTTCTAAAAGTGAGTCGAGGTATAAAGATACAGGGAAGTAAGTCTGTTAC
TGCAAAATTACCTGTGAATAAATAATATTTTGGTACATCGTTCTACACAG
CTCATCTCAACCTGGACTGAGCAAAACCAGCCAGCCATAATTGGCATCAA
GATCTGGTTGTTCATAAAGGAACTTGGCTGATCCAGGCCAAATCAGGCCA
TACGATACATCTTCTTTGACAATCCTGTCTTGAACGTGCTCCAAATCGCT
TGCAGAGATATTATTAAACTTATTTTTACTTTTTAGAATGGTAAAACGTT
TGAGCTTTTGAACTGCGATGATCATAAAGGCATTTTGAGGAAGAAGGGGA
ATGACCCTGCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATG
TTGATGGACAGTCCCTTGAATCGTGCCGGTCTTCTTCAAGTTTATNCTTG
TAGAGATATTATTAAACTTATTTTTACTTTTTAGAATGGTAAAACGTTTG
AGCTTTTGAACTGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAAT
GACCCTGCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATGTT
GATGGACAGTCCCTTGAATCGTGCTGGTCTTCTTCAAGTTTATATCCACA
CAGAAAAGAACGTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGA
ACTTATAATAGATTTTCTGGTTTGATGGGTAAGTACCTTGGTTATTTCTG
ACAGTTATTATTATTGTTGTTATTACATCATAGGTTTGAATAAAAGTTCA
CATGTACCATATAGGTCTCTAAGAACTTTTTTGTAATTATATTACAGTAC
CGTGATACTTTGTTATTAATGCTATTTTCATGCTCGTTCCCTGCATGTTA
TCAACTTTTGATGCTTACTGACAACGTGAGTAAAGCCTTTGATATACGAG
GCTGTACTTCATGAAGATTTTTCTCTATCAAAGTTTCTTAAAAGTACATT
GATGTAGTTGCAAAGCAAAAAAATAAGTTAAAAATTCCTTTTTCTTTTTT
ATCAGTCCAATTGCTTCACAAATTGAGTATCCACGCTTCAAATGGTCCCA
TCAAACTAATGAAGGTATTTTTTCTGCTCATTTTCATAGTATTGTTTTTT
TATACCGGGTGCACCACAAACAAAGTTTCTCTCTTTAAAATAAATATTCT
TGAGGTCTAAAAATTCTAAAATAACCATTCTTTTTTCATTGAAAAGAAGA
AACGTAAACTTGTATTTTGAAGGGTAATTTATTAAATTCGGTTCTTTAGA
TAAAAAATTATGCTCAATGCAATAAAAAAATTACTTTCAGAAAGTGCTCG
ATAACTTTGAAAATCGACCTATCAAATTAAACAGATGCATAATTACTAAT
CTCAATAGGTTATTGATCAAGCCTTTAAAGTCTGAAAAGTGCATTATCGT
TACATAAATGTATTTCAAATTTAGGCCCGTTTTAGCACACTCTGTATTTA
ATGCGTCATTCTAAAAGTTCTCCCTTCCATAACTTTCTGCTTTAGGTAAT
CAAAAACCCAATAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGGTA
TAATAAACATTAAAAAAGTTTTTTTTACCTCTTTACCCCAATGCTGTTTG
ATTTTTATGCATTGTTACAATAAATTCTCTCTAAATTTAGGGTTTTTTAT
TCTTTAAAAAACATCTAAAAAGTATCGTATCAAACTTTTTTTAAAGACTT
GACTTGTTTATGGCTCAAAAATGTGACGTATTTACAATGATAAATCCTGA
AGAATCTCATTTATGATTTCTTTTGTGTATTTACAGTGATGTCATACAAA
GCAAAGAAATGTACGCCTCCGAGAGAACTGGTACCTACTGATGAACCAAT
CGTTTTCGTTATCGGTGCTATGGCTCATGGAAAGGTACGTCTCCAGTCTT
TACATCCTTTAAAATTCAAAATTCAACGAAAAGTTCAAATAATAAACTTG
AATAAACCACAGAATTACTTTCTAAATCATTGAATTACCTGCAACGAGCT
GTTGTCTACTTATAAAGATGACGCATAATTTTGCAAGGTAGCTATATCTA
GTGTGGTTATCACCTTCTACAAAAGTATTGGAAACTTAAGTAACCTCCTT
CCAGGAAACGTCAAACACGGTTGAAATTTATTTGGTAAATGTGCCAAACC
CTGAAACCCCACCCCCACCCCTTTAGAAACTAAAGCTTTGACTGCATGAT
GTAAAACTTGATTTTCACCAATGTTTTTCAGGTCGATGCAAGTTATGGTG
AGGAAGATATAGCGATCAGTGAATACCCACTCTCCGCAGCTCTAACGTGT
GCCAAAGTATGTAGTGCCTTTGAAGAACAATGGGGAATCACTTAACATTG
CATCGAGTCTTTTAGCAAGATCTTTTCAATATTACATTGATAGCTTATGT
TTCAAGTAGTGGCTGTGGTTAGACAATTAATGAAGCAGCAGATCCATTAT
GGAAAGGCTCTGGTATACTTATTGGATATCTTGATTGAAATGGCGACGGG
CAATATTGTAAATGTTGGATAGAACTTTTAAATAATTGTGAACCATGAAT
TTATGATCTCTTTAAGTGATGATGAAAATAACTTTTGTAGATGGTTAAGA
ATTTATTTACATATCGTACATTACTTTTAGCCTGCTTCTCACTCAAACAT
GCTTCTTCTAAATTGATTGAAGCTAAATAAAGCTCTAGATCAATTTTTGA
GAGTTTTGTCTTTAACAAGATAATACATCAATTATACTTTGTCAGAGACA
TTACAACATTTTTC

Coding sequence (CDS) from alignment at scaffold_498:350655..359168-

>TCONS_00069359 ID=TCONS_00069359|Name=TCONS_00069359|organism=Clytia hemisphaerica|type=CDS|length=4086bp|location=Sequence derived from alignment at scaffold_498:350655..359168- (Clytia hemisphaerica)
GTCGATGCAAGTTATGGTGAGGAAGATATAGCGATCAGTGAATACCCACT
CTCCGCAGCTCTAACGTGTGCCAAAGTATGTAGTGCCTTTGAAGAACAAT
GGGGAATCACTTAATGATGTCATACAAAGCAAAGAAATGTACGCCTCCGA
GAGAACTGGTACCTACTGATGAACCAATCGTTTTCGTTATCGGTGCTATG
GCTCATGGAAAGGTAATCAAAAACCCAATAACAGATCATCTTCCAGTTGG
CTGCAAAAAACTAGTCCAATTGCTTCACAAATTGAGTATCCACGCTTCAA
ATGGTCCCATCAAACTAATGAAGAATGGTAAAACGTTTGAGCTTTTGAAC
TGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAATGACCCTGCAAA
CTACCGACCAGACATAACCCACCAATGTTTACTGATGTTGATGGACAGTC
CCTTGAATCGTGCTGGTCTTCTTCAAGTTTATATCCACACAGAAAAGAAC
GTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGAACTTATAATAG
ATTTTCTGGTTTGATGGATGAGTGACGATGAAGGACCTAAAAAAGCAAAG
ATACCAAGAGTGTCTAAACCAAAAGACAGAGACAAGCGTTTAATCGTTAT
TTTGGAGTGTGCTTCGTTAGAAACTGTGAAGGTCGATGCAAGTTATGGTG
AGGAAGATATAGCGATCAGTGAATACCCACTCTCCGCAGCTCTAACGTGT
GCCAAAGTATGTAGTGCCTTTGAAGAACAATGGGGAATCACTTAATGATG
TCATACAAAGCAAAGAAATGTACGCCTCCGAGAGAACTGGTACCTACTGA
TGAACCAATCGTTTTCGTTATCGGTGCTATGGCTCATGGAAAGGTAATCA
AAAACCCAATAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGTCCAA
TTGCTTCACAAATTGAGTATCCACGCTTCAAATGGTCCCATCAAACTAAT
GAAGAATGGTAAAACGTTTGAGCTTTTGAACTGTGATGATCATAAAGGCA
TTTTGAGGAAGAAGGGAAATGACCCTGCAAACTACCGACCAGACATAACC
CACCAATGTTTACTGATGTTGATGGACAGTCCCTTGAATCGTGCTGGTCT
TCTTCAAGTTTATATCCACACAGAAAAGAACGTTCTAATTGAGATCAACC
CACAAACTCGAATTCCAAGAACTTATAATAGATTTTCTGGTTTGATGGAT
GAGTGACGATGAAGGACCTAAAAAAGCAAAGATACCAAGAGTGTCTAAAC
CAAAAGACAGAGACAAGCGTTTAATCGTTATTTTGGAGTGTGCTTCGTTA
GAAACTGTGAAGGTCGATGCAAGTTATGGTGAGGAAGATATAGCGATCAG
TGAATACCCACTCTCCGCAGCTCTAACGTGTGCCAAAGTATGTAGTGCCT
TTGAAGAACAATGGGGAATCACTTAATGATGTCATACAAAGCAAAGAAAT
GTACGCCTCCGAGAGAACTGGTACCTACTGATGAACCAATCGTTTTCGTT
ATCGGTGCTATGGCTCATGGAAAGGTAATCAAAAACCCAATAACAGATCA
TCTTCCAGTTGGCTGCAAAAAACTAGTCCAATTGCTTCACAAATTGAGTA
TCCACGCTTCAAATGGTCCCATCAAACTAATGAAGAATGGTAAAACGTTT
GAGCTTTTGAACTGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAA
TGACCCTGCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATGT
TGATGGACAGTCCCTTGAATCGTGCTGGTCTTCTTCAAGTTTATATCCAC
ACAGAAAAGAACGTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAG
AACTTATAATAGATTTTCTGGTTTGATGGATGAGTGACGATGAAGGACCT
AAAAAAGCAAAGATACCAAGAGTGTCTAAACCAAAAGACAGAGACAAGCG
TTTAATCGTTATTTTGGAGTGTGCTTCGTTAGAAACTGTGAAGGTCGATG
CAAGTTATGGTGAGGAAGATATAGCGATCAGTGAATACCCACTCTCCGCA
GCTCTAACGTGTGCCAAAGTATGTAGTGCCTTTGAAGAACAATGGGGAAT
CACTTAATGATGTCATACAAAGCAAAGAAATGTACGCCTCCGAGAGAACT
GGTACCTACTGATGAACCAATCGTTTTCGTTATCGGTGCTATGGCTCATG
GAAAGGTAATCAAAAACCCAATAACAGATCATCTTCCAGTTGGCTGCAAA
AAACTAGTCCAATTGCTTCACAAATTGAGTATCCACGCTTCAAATGGTCC
CATCAAACTAATGAAGAATGGTAAAACGTTTGAGCTTTTGAACTGTGATG
ATCATAAAGGCATTTTGAGGAAGAAGGGAAATGACCCTGCAAACTACCGA
CCAGACATAACCCACCAATGTTTACTGATGTTGATGGACAGTCCCTTGAA
TCGTGCTGGTCTTCTTCAAGTTTATATCCACACAGAAAAGAACGTTCTAA
TTGAGATCAACCCACAAACTCGAATTCCAAGAACTTATAATAGATTTTCT
GGTTTGATGGATGAGTGACGATGAAGGACCTAAAAAAGCAAAGATACCAA
GAGTGTCTAAACCAAAAGACAGAGACAAGCGTTTAATCGTTATTTTGGAG
TGTGCTTCGTTAGAAACTGTGAAGGTCGATGCAAGTTATGGTGAGGAAGA
TATAGCGATCAGTGAATACCCACTCTCCGCAGCTCTAACGTGTGCCAAAG
TATGTAGTGCCTTTGAAGAACAATGGGGAATCACTTAATGATGTCATACA
AAGCAAAGAAATGTACGCCTCCGAGAGAACTGGTACCTACTGATGAACCA
ATCGTTTTCGTTATCGGTGCTATGGCTCATGGAAAGGTAATCAAAAACCC
AATAACAGATCATCTTCCAGTTGGCTGCAAAAAACTAGTCCAATTGCTTC
ACAAATTGAGTATCCACGCTTCAAATGGTCCCATCAAACTAATGAAGAAT
GGTAAAACGTTTGAGCTTTTGAACTGTGATGATCATAAAGGCATTTTGAG
GAAGAAGGGAAATGACCCTGCAAACTACCGACCAGACATAACCCACCAAT
GTTTACTGATGTTGATGGACAGTCCCTTGAATCGTGCTGGTCTTCTTCAA
GTTTATATCCACACAGAAAAGAACGTTCTAATTGAGATCAACCCACAAAC
TCGAATTCCAAGAACTTATAATAGATTTTCTGGTTTGATGGATGAGTGAC
GATGAAGGACCTAAAAAAGCAAAGATACCAAGAGTGTCTAAACCAAAAGA
CAGAGACAAGCGTTTAATCGTTATTTTGGAGTGTGCTTCGTTAGAAACTG
TGAAGGTCGATGCAAGTTATGGTGAGGAAGATATAGCGATCAGTGAATAC
CCACTCTCCGCAGCTCTAACGTGTGCCAAAGTATGTAGTGCCTTTGAAGA
ACAATGGGGAATCACTTAATGATGTCATACAAAGCAAAGAAATGTACGCC
TCCGAGAGAACTGGTACCTACTGATGAACCAATCGTTTTCGTTATCGGTG
CTATGGCTCATGGAAAGGTAATCAAAAACCCAATAACAGATCATCTTCCA
GTTGGCTGCAAAAAACTAGTCCAATTGCTTCACAAATTGAGTATCCACGC
TTCAAATGGTCCCATCAAACTAATGAAGAATGGTAAAACGTTTGAGCTTT
TGAACTGTGATGATCATAAAGGCATTTTGAGGAAGAAGGGAAATGACCCT
GCAAACTACCGACCAGACATAACCCACCAATGTTTACTGATGTTGATGGA
CAGTCCCTTGAATCGTGCTGGTCTTCTTCAAGTTTATATCCACACAGAAA
AGAACGTTCTAATTGAGATCAACCCACAAACTCGAATTCCAAGAACTTAT
AATAGATTTTCTGGTTTGATGGATGAGTGACGATGAAGGACCTAAAAAAG
CAAAGATACCAAGAGTGTCTAAACCAAAAGACAGAGACAAGCGTTTAATC
GTTATTTTGGAGTGTGCTTCGTTAGAAACTGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043223XLOC_043223Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069359-proteinTCONS_00069359-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069359-exon-scaffold_498-1575043694:358722..359168TCONS_00069359-exon-scaffold_498-1575043694:358722..359168Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1575043694:352741..352984TCONS_00069359-exon-scaffold_498-1575043694:352741..352984Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1575043694:352355..352413TCONS_00069359-exon-scaffold_498-1575043694:352355..352413Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1575043694:351872..351923TCONS_00069359-exon-scaffold_498-1575043694:351872..351923Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1575043694:351535..351632TCONS_00069359-exon-scaffold_498-1575043694:351535..351632Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1575043694:350655..351187TCONS_00069359-exon-scaffold_498-1575043694:350655..351187Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1510915933:358722..359168TCONS_00069359-exon-scaffold_498-1510915933:358722..359168Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1510915933:352741..352984TCONS_00069359-exon-scaffold_498-1510915933:352741..352984Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1510915933:352355..352413TCONS_00069359-exon-scaffold_498-1510915933:352355..352413Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1510915933:351872..351923TCONS_00069359-exon-scaffold_498-1510915933:351872..351923Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1510915933:351535..351632TCONS_00069359-exon-scaffold_498-1510915933:351535..351632Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1510915933:350655..351187TCONS_00069359-exon-scaffold_498-1510915933:350655..351187Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1491911889:358722..359168TCONS_00069359-exon-scaffold_498-1491911889:358722..359168Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1491911889:352741..352984TCONS_00069359-exon-scaffold_498-1491911889:352741..352984Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1491911889:352355..352413TCONS_00069359-exon-scaffold_498-1491911889:352355..352413Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1491911889:351872..351923TCONS_00069359-exon-scaffold_498-1491911889:351872..351923Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1491911889:351535..351632TCONS_00069359-exon-scaffold_498-1491911889:351535..351632Clytia hemisphaericaexon
TCONS_00069359-exon-scaffold_498-1491911889:350655..351187TCONS_00069359-exon-scaffold_498-1491911889:350655..351187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:350655..359168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.08956	3.51084	2.51545	2.90385	0	0.408953	4.73968	1.27421	3.53547	1.5561	8.79842e-10	2.59244	5.57274	2.75506e-10	0	0	2.35513e-05	0	0	1.00112e-09	4.54103	8.65733e-06	4.6815	7.69304	17.5856	12.6154	0	1.75687	4.36908	5.72326
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005304Rbsml_bgen_MeTrfase_EMG1/NEP1
IPR029028Alpha/beta_knot_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
Blast
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BLAST of TCONS_00069359 vs. Swiss-Prot (Human)
Match: NEP1 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4)

HSP 1 Score: 304.679 bits (779), Expect = 3.028e-100
Identity = 149/228 (65.35%), Postives = 177/228 (77.63%), Query Frame = 1 
Query:  328 GRMSDDEGPKKAKIPRV-SKPKDRDKRLIVILECASLETVKNGKTFELLNCDDHKGILRKKGNDPANYRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTYNRFSGLMVQLLHKLSIHASNGPIKLMKVIKNPITDHLPVGCKKLVMSYKAKKCTPPRELVPTDEPIVFVIGAMAHGKVDASYGEEDIAISEYPLSAALTCAKVCSAFEEQWGI 1008
            G  + D      K PR+ +  K   +RLIV+LE ASLETVK GKT+ELLNCD HK IL K G DP   RPDITHQ LLMLMDSPLNRAGLLQVYIHT+KNVLIE+NPQTRIPRT++RF GLMVQLLHKLS+ A++GP KL+KVIKNP++DH PVGC K+  S+     +  RELVP+ +PIVFV+GA AHGKV   Y E+ ++IS YPLSAALTCAK+ +AFEE WG+
Sbjct:   16 GEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGV 243
The following BLAST results are available for this feature:
BLAST of TCONS_00069359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEP13.028e-10065.35Ribosomal RNA small subunit methyltransferase NEP1... [more]
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