TCONS_00069351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069351
Unique NameTCONS_00069351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069351 ID=TCONS_00069351|Name=TCONS_00069351|organism=Clytia hemisphaerica|type=transcript|length=434bp
tgctcaGCGAGTAAGACAATTAGTGCAACAAAAAGCAAATTAATAATGAA
TTATCAAACCAACAATCGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAG
AAATGAGCACGACAAGCAATGAGGCTGCAAAACTTCTAGATCATGCTATA
GACCAGATGTTTTGTCATGTTGCAGACCCTACGATTGGAGGTGTGATTGG
TACTGTAGATAAAATGTTGGAAGCTGACCCTGATTTCTTCATGGCAAAAA
TCTTCTCCATTGGAGTTCAAGGAGGATGCTGTAGAAACAGTCGAACCATT
GCTAAACTAGTCTCTGAATTGGAAGCAGTTGATGACTCAAAGCTTAACGA
GCGAGAAAAATTGCATCGTAAAGCCAGCATTGAATGGGCTACTGAGAAAA
AGAGAGATGCTTGTCGTACTTGGGAACATATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_498:158646..160261-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069351 ID=TCONS_00069351|Name=TCONS_00069351|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at scaffold_498:158646..160261- (Clytia hemisphaerica)
TGCTCAGCGAGTAAGACAATTAGTGCAACAAAAAGCAAATTAATAATGAA
TTATCAAACCAACAATCGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAG
AAATGAGCACGACAAGCAATGAGGCTGCAAAACTTCTAGATCATGCTATA
GACCAGATGTTTTGTCATGTTGCAGACCCTACGATTGGAGGTGTGATTGG
TACTGTAGATAAAATGTTGGAAGCTGACCCTGATTTCTTCATGGCAAAAA
TCTTCTCCATTGGTGAGTAGATTTTTTTGCATTGAGATATTTTAAAAAAG
ACCTACACTTTTTTTATAAGAACAATGAGGCTCAAAATCTCCAAAAAATA
AGAACAATGCTGAGCCTGAAATTACTCAATATCAAGCAATTTAGGGGGCA
ACGTAGTAAAAATTTGGTATAACGTCTAAAATACCCTCTATTACATCCTA
TAAATAAGAACAGGATAAGAACAATTTGAGGCTCAGAGTGACAAAAAAAT
AAGAGCAGCCGAGCCTCAGCAAAATTATACTGGTTCTTATAAAAAAGTGT
ATTTTCCAATGGGTTTTGTTAATGGCCTAAATGACAGATAATTTACTAGT
CTTCATCAAAAATCATGAAGGTTGTCCAACTATCTTCTTTCGGTAGATTC
GACAGAGCAGTATATGCATTTCATCTGTATTACTGTAAGTTTGACTAATG
CCGACATACCTCTTCTAATTTCATCACTCTTCTTTAGAGATGAATAATAG
GAAGGTTGGAATCGCTGCTGATGGAAACTTTTTTTCTTTGCTTAGCGATA
GCGATGAGAGTGGGAAAGAATCATTTGTATATCAGTGATTTCAACCTATC
ATTCCTGTCGACATTTGACAAGCTAACAGTAGGACTCATCAGTACACTGC
ATAGAGCACCCTGGCTGGCCAGATCGATTTAGCCAGCATCTCTGAACCAC
AAAATCATTTGTGGTTTGAACTGAGAAATAGTATAGAAATATATATATAT
GCGAAAAGACAAAATGCATATGCTACTCTGCCACCCAAATCTCCTGAAAG
AAGATAGTTGGGCAGAAATTCTTTGAATTTCTTCAAATATATATTCTTTT
TTGAGACCAAATGCAGTGTCAAGACTTTCCTCCATTTTGGTTCTCTTCAA
AGCATGACTCCAGAGGAGTCATTCACAGAATGGGAAGTCTGTGCCGCAAT
TAGTTTATGGCGTGAGATGCTGATATGCTAGATGTATAAACCTGCTCTAC
CACCGAAATCTCCTAGAAGTGAATATTAGTTGGACAGAAATTCTTATTTC
TTCACATGTCGAGCAACAAACAGAGGTTAAATTTAGAGATTATTATAATT
TAGATAGAGATTAGATTATTTTTGGTTTACTTTTAGTTTGATTACCCTGA
AATACATCTATATGTAATGAAATTTAACTTTTCATCGTTTGCAGGAGTTC
AAGGAGGATGCTGTAGAAACAGTCGAACCATTGCTAAACTAGTCTCTGAA
TTGGAAGCAGTTGATGACTCAAAGCTTAACGAGCGAGAAAAATTGCATCG
TAAAGCCAGCATTGAATGGGCTACTGAGAAAAAGAGAGATGCTTGTCGTA
CTTGGGAACATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043217XLOC_043217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069351-exon-scaffold_498-1575043694:160000..160261TCONS_00069351-exon-scaffold_498-1575043694:160000..160261Clytia hemisphaericaexon
TCONS_00069351-exon-scaffold_498-1575043694:158646..158817TCONS_00069351-exon-scaffold_498-1575043694:158646..158817Clytia hemisphaericaexon
TCONS_00069351-exon-scaffold_498-1510915933:160000..160261TCONS_00069351-exon-scaffold_498-1510915933:160000..160261Clytia hemisphaericaexon
TCONS_00069351-exon-scaffold_498-1510915933:158646..158817TCONS_00069351-exon-scaffold_498-1510915933:158646..158817Clytia hemisphaericaexon
TCONS_00069351-exon-scaffold_498-1491911889:160000..160261TCONS_00069351-exon-scaffold_498-1491911889:160000..160261Clytia hemisphaericaexon
TCONS_00069351-exon-scaffold_498-1491911889:158646..158817TCONS_00069351-exon-scaffold_498-1491911889:158646..158817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:158646..160261 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23074	3.16716	5.30098	4.68377	4.60866	5.22265	7.66044	7.33938	5.60141	4.9347	5.31193	3.36685	4.3173	5.94855	4.50634	5.62077	5.15346	5.90428	3.23213	1.22351	2.28335	3.23217	4.25243	3.88782	6.24451	8.15941	6.11863	3.91192	4.37265	3.67903
Blast
[Close]
BLAST of TCONS_00069351 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.363e-16
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:   67 RDCQAWKDEGLEMSTTSNEAAKLLDHAIDQMFCHVADPTIGGVIGTVDKMLEADPDFFMAKIFSIGV----QGGCCRNSRTIAKLVSELEAVDDSK-LNEREKLHRKASIEWATEKKRDACRTWEHI 432
            RDCQAWKD  L +STTSNEA KL D  + Q      D ++GG+ G + K+  ADP F M    + G+     G   +  + +   V  +  +  ++ L  RE+LH  A   +A      AC  WE I
Sbjct:    8 RDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPKACELWEQI 134
The following BLAST results are available for this feature:
BLAST of TCONS_00069351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC381.363e-1635.43Tetratricopeptide repeat protein 38 OS=Homo sapien... [more]
back to top