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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069350 ID=TCONS_00069350|Name=TCONS_00069350|organism=Clytia hemisphaerica|type=transcript|length=985bp
ttgaaactgaaaaagttaagaatatctgaaggcttcaaaaatgttggatg
atcttataaaaaaaaccgtgTATTCTGACATGTGGTCAGATTTGaccttt
ttaaaatattttgctgCGCTTATATAAAtgtatttaatttattttttgct
caGCGAGTAAGACAATTAGTGCAACAAAAAGCAAATTAATAATGAATTAT
CAAACCAACAATCGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAGAAAT
GAGCACGACAAGCAATGAGGCTGCAAAACTTCTAGATCATGCTATAGACC
AGATGTTTTGTCATGTTGCAGACCCTACGATTGGAGGTGTGATTGGTACT
GTAGATAAAATGTTGGAAGCTGACCCTGATTTCTTCATGGCAAAAATCTT
CTCCATTGGAGTTCAAGGAGGATGCTGTAGAAACAGTCGAACCATTGCTA
AACTAGTCTCTGAATTGGAATCCGTTGATGACTCAAAGCTTAACGAGCGA
GAAAAATTGCATCGTAAAGCCAGCATTGAATGGGCTACTGAGAAAAAGAG
AGATGCATGTCGTACTTGGGAATATATTTTACTACAATATCCAAAAGATA
CCATTGCCATTCTGTTTTCATTCTATGGATATATCATTACTGGCCAATCA
AGGATGTTGAGAGATTCACTAGCACGCACATTACCATATTGGAGAGAATC
AGATTTTCACTATGGATATCTTCAAGgCTATTACGCATTTGGATTGGAAC
AAAGCAACCAATTCGTTCAAGCTGAGAAAGCTGTCAAAAAGTCTTTGGAA
ATCAATCCTGATAATACTTGGGGCTTTCACGCCTATTCTCACATCTTTGA
CGCAACCTGTCGTTCCCANatactacactttgaattttttgactttgcca
ttTGACGAACTACCCTAGTACAACCCTGATAATCATATATGACGAGAAAG
CAAAGTACCAGCCCAGTTTATTTCCGCTAAAGAGG Run BLAST on NCBI transcript from alignment at scaffold_498:156609..160407- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069350 ID=TCONS_00069350|Name=TCONS_00069350|organism=Clytia hemisphaerica|type=transcript|length=3799bp|location=Sequence derived from alignment at scaffold_498:156609..160407- (Clytia hemisphaerica)
TTGAAACTGAAAAAGTTAAGAATATCTGAAGGCTTCAAAAATGTTGGATG
ATCTTATAAAAAAAACCGTGTATTCTGACATGTGGTCAGATTTGACCTTT
TTAAAATATTTTGCTGCGCTTATATAAATGTATTTAATTTATTTTTTGCT
CAGCGAGTAAGACAATTAGTGCAACAAAAAGCAAATTAATAATGAATTAT
CAAACCAACAATCGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAGAAAT
GAGCACGACAAGCAATGAGGCTGCAAAACTTCTAGATCATGCTATAGACC
AGATGTTTTGTCATGTTGCAGACCCTACGATTGGAGGTGTGATTGGTACT
GTAGATAAAATGTTGGAAGCTGACCCTGATTTCTTCATGGCAAAAATCTT
CTCCATTGGTGAGTAGATTTTTTTGCATTGAGATATTTTAAAAAAGACCT
ACACTTTTTTTATAAGAACAATGAGGCTCAAAATCTCCAAAAAATAAGAA
CAATGCTGAGCCTGAAATTACTCAATATCAAGCAATTTAGGGGGCAACGT
AGTAAAAATTTGGTATAACGTCTAAAATACCCTCTATTACATCCTATAAA
TAAGAACAGGATAAGAACAATTTGAGGCTCAGAGTGACAAAAAAATAAGA
GCAGCCGAGCCTCAGCAAAATTATACTGGTTCTTATAAAAAAGTGTATTT
TCCAATGGGTTTTGTTAATGGCCTAAATGACAGATAATTTACTAGTCTTC
ATCAAAAATCATGAAGGTTGTCCAACTATCTTCTTTCGGTAGATTCGACA
GAGCAGTATATGCATTTCATCTGTATTACTGTAAGTTTGACTAATGCCGA
CATACCTCTTCTAATTTCATCACTCTTCTTTAGAGATGAATAATAGGAAG
GTTGGAATCGCTGCTGATGGAAACTTTTTTTCTTTGCTTAGCGATAGCGA
TGAGAGTGGGAAAGAATCATTTGTATATCAGTGATTTCAACCTATCATTC
CTGTCGACATTTGACAAGCTAACAGTAGGACTCATCAGTACACTGCATAG
AGCACCCTGGCTGGCCAGATCGATTTAGCCAGCATCTCTGAACCACAAAA
TCATTTGTGGTTTGAACTGAGAAATAGTATAGAAATATATATATATGCGA
AAAGACAAAATGCATATGCTACTCTGCCACCCAAATCTCCTGAAAGAAGA
TAGTTGGGCAGAAATTCTTTGAATTTCTTCAAATATATATTCTTTTTTGA
GACCAAATGCAGTGTCAAGACTTTCCTCCATTTTGGTTCTCTTCAAAGCA
TGACTCCAGAGGAGTCATTCACAGAATGGGAAGTCTGTGCCGCAATTAGT
TTATGGCGTGAGATGCTGATATGCTAGATGTATAAACCTGCTCTACCACC
GAAATCTCCTAGAAGTGAATATTAGTTGGACAGAAATTCTTATTTCTTCA
CATGTCGAGCAACAAACAGAGGTTAAATTTAGAGATTATTATAATTTAGA
TAGAGATTAGATTATTTTTGGTTTACTTTTAGTTTGATTACCCTGAAATA
CATCTATATGTAATGAAATTTAACTTTTCATCGTTTGCAGGAGTTCAAGG
AGGATGCTGTAGAAACAGTCGAACCATTGCTAAACTAGTCTCTGAATTGG
AAGCAGTTGATGACTCAAAGCTTAACGAGCGAGAAAAATTGCATCGTAAA
GCCAGCATTGAATGGGCTACTGAGAAAAAGAGAGATGCTTGTCGTACTTG
GGAACATATTTTACTACANAATATGTAATGAAATTTAACTTTGTATCGTT
TGCAGGAGTTCAAGGAGGATGCTGTAGAAACAGTCGAACCATTGCTAAAC
TAGTCTCTGAATTGGAATCCGTTGATGACTCAAAGCTTAACGAGCGAGAA
AAATTGCATCGTAAAGCCAGCATTGAATGGGCTACTGAGAAAAAGAGAGA
TGCATGTCGTACTTGGGAATATATTTTACTACAATATCCAAAAGATACCA
TTGCCATTCTGTTTTCATTCTATGGATATATCATTACTGGCCAATCAAGG
ATGTTGAGAGATTCACTAGCACGCACATTACCATATTGGAGAGAATCAGA
TTTTCACTATGGATATCTTCAAGGTAAGGATATTCTAACTTTCAAATGAT
TTAGCCCTTTTTATCGTTATCTGTCACTCTGAAGAATTTTGAATTTGGGG
ATTTAGACTGGTAAATGAAAATTTAAACTTTCTTGTTTTTTTGAGGTGAA
GCCTTTATTTACCCTATGTAAGGGTTAAATTGTGCCTTCAATATAAGTAA
AATTTACCTTATCTGGTACAACTAAGGTAGATCGTCAACTACCATTTTTA
GCATGATGTCAAAAAATTCAAAGTGTAGTATTTTTTTGTGAAAATTTAAT
ATACTGTGAGACATTTTGCGCAATTTTTAGCCTCCTAGGTCAAAAATCCA
GCATTCCCCAGGGGGGGTCTTTGATTCGCACTAAACCAATTTCATAAAAT
GCAAATTCTATAATGGTGAACTTTGGCAAATTTCTAACCCAAACCATTTT
GTTTCTCCCAGAGTATCTTCAGAATACTTTCAACACCAAAAGATTTCAGG
ACACCATAATATGGTGTCCTGAAATCTTTTGGTGTTGAAAGTATTCTGAA
AATACTCTGGGAGAATCAAAATGGTTTGGGTCAGAAATTTGCCCAAGTCT
GCCATTATGGTATTGCATTTATTATGAAACCATTTTTGAGATTTTAGCCT
GAGAAAATTAGACTTTAAACTCTAAATATCGCGTTTTAGTGGGAAATGCA
ATACCATAATGGCAGACTTGGGCAAATTTCTGACCCAAACCATTTTGATT
CTCCCAGAGTATTTTCAGAATACTTCCAAGATCCAAAGATTTCAGGACAC
CATTTGAAATCATTTTTGAGATTTTAGCCCAAGAAAAAGTTTTAGCTTGA
AATAATATTAGCATTTAGCATGAAAACTCAATTTCTAGGGCGCCATAATG
GATTTATAGGAGATTTTTGAAAACTCAAAATTGATTTTTCCTGGAGCTAT
CTCTGAAGTGTTTTATTGCTGAAAATTTCAATAGTGTACCTTAAAAAGTT
TAAAATTGTAGGTCCTCAAAAATGCTGCTTTTATGCATTTTGCTATCCAG
AATTGGAGAAAATCAGCCTTTTTAGCCTGAAATTGAAACATTGAGTGATC
TCGCTGGGGTTATTTTGTCTTTTTATGTTGAATATTAGTACAAGACACCA
TTTAAAAACCATTTTGACCCTTTCCTGGCCTTTTATAGTCTTAAAGTGGC
CAAAAAAATGCCAATTTTACTTTTTTTTCGCTTTAGTGCGAATCAAAGAC
CCCCCTGGGGAATGCTGGATTTTTGACCTAGGAGGTTAAAATTTGCGCAA
AATGTCTTACAATAGATTANNNNNNNNNNNNNNNNNNNNGGGCTCGTTGG
CTGCTTCTGACCCTGGCCGACCTAAAGATTATTTATCACGACTCAAATTT
GCACAAGGCTAATCTTTTATGTTTTTTTTTTTATTCATAGGCTATTACGC
ATTTGGATTGGAACAAAGCAACCAATTCGTTCAAGCTGAGAAAGCTGTCA
AAAAGTCTTTGGAAATCAATCCTGATAATACTTGGGGCTTTCACGCCTAT
TCTCACATCTTTGACGCAACCTGTCGTTCCCANATACTACACTTTGAATT
TTTTGACTTTGCCATTTGACGAACTACCCTAGTACAACCCTGATAATCAT
ATATGACGAGAAAGCAAAGTACCAGCCCAGTTTATTTCCGCTAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069350-exon-scaffold_498-1575043694:160000..160407 | TCONS_00069350-exon-scaffold_498-1575043694:160000..160407 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1575043694:158285..158602 | TCONS_00069350-exon-scaffold_498-1575043694:158285..158602 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1575043694:156609..156867 | TCONS_00069350-exon-scaffold_498-1575043694:156609..156867 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1510915933:160000..160407 | TCONS_00069350-exon-scaffold_498-1510915933:160000..160407 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1510915933:158285..158602 | TCONS_00069350-exon-scaffold_498-1510915933:158285..158602 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1510915933:156609..156867 | TCONS_00069350-exon-scaffold_498-1510915933:156609..156867 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1491911889:160000..160407 | TCONS_00069350-exon-scaffold_498-1491911889:160000..160407 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1491911889:158285..158602 | TCONS_00069350-exon-scaffold_498-1491911889:158285..158602 | Clytia hemisphaerica | exon |
| TCONS_00069350-exon-scaffold_498-1491911889:156609..156867 | TCONS_00069350-exon-scaffold_498-1491911889:156609..156867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:156609..160407 - |
Blast
BLAST of TCONS_00069350 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.781e-41 Identity = 80/218 (36.70%), Postives = 115/218 (52.75%), Query Frame = 3
Query: 213 RDCQAWKDEGLEMSTTSNEAAKLLDHAIDQMFCHVADPTIGGVIGTVDKMLEADPDFFMAKIFSIGV----QGGCCRNSRTIAKLVSELESVDDSK-LNEREKLHRKASIEWATEKKRDACRTWEYILLQYPKDTIAILFSFYGYIITGQSRMLRDSLARTLPYWRESDFHYGYLQGYYAFGLEQSNQFVQAEKAVKKSLEINPDNTWGFHAYSHIFD 851
RDCQAWKD L +STTSNEA KL D + Q D ++GG+ G + K+ ADP F M + G+ G + + + V + + ++ L RE+LH A +A AC WE IL +P D +A+ FS Y G +RDS+AR P+W Y++G Y+FGL ++N + QAEK K++L INP + W H +HI +
Sbjct: 8 RDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPKACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHE 225
The following BLAST results are available for this feature:
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