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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069341 ID=TCONS_00069341|Name=TCONS_00069341|organism=Clytia hemisphaerica|type=transcript|length=2844bpRun BLAST on NCBI protein sequence of TCONS_00069341-protein >TCONS_00069341-protein ID=TCONS_00069341-protein|Name=TCONS_00069341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp MMTTTALTEFERAECRNFLEGLTNSAKSEEDNDSASFPHDNQFESLCFCVRun BLAST on NCBI transcript from alignment at scaffold_498:489545..506648+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069341 ID=TCONS_00069341|Name=TCONS_00069341|organism=Clytia hemisphaerica|type=transcript|length=17104bp|location=Sequence derived from alignment at scaffold_498:489545..506648+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_498:489545..506648+ >TCONS_00069341 ID=TCONS_00069341|Name=TCONS_00069341|organism=Clytia hemisphaerica|type=CDS|length=11616bp|location=Sequence derived from alignment at scaffold_498:489545..506648+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069341 vs. Swiss-Prot (Human)
Match: PPM1E (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=2) HSP 1 Score: 284.648 bits (727), Expect = 3.289e-82 Identity = 166/394 (42.13%), Postives = 239/394 (60.66%), Query Frame = 2
Query: 413 VIDEEIPGELTDIINRFLHYRKCPDILIGPLISYVLNKFQDTDLTQFKLERKDDES---TEYNASSLSKHLYQVFLKSCLDFISNFDSMTIQKNPQSFH-VSLQAVRNRRRRMEDRHVYYTDLNSLLNLDEAQTGQALFAVFDGHGGIDAANYAASHLLTHLKACPNLITQPGEALHKAILKTDEEFIKKGKREKLRSGATAVVVLIQGLNLTVAWLGDSQVVLCKAGDAVQLMDPHKPNRPDERARIESLGGCVVNFGGWRVNGILAVARSIGDSEQKPYVTXXXXXXXXXXXXXXXFVILACDGLWDTVEPFDAVQLVRKCMEEGTRDSA--AGKLVDLAIKQRSMDNISILVVYF-DFNGPVVFSADNTTNSEEMSEANNEDEKGDIKENH 1573
+ EE+ GE D+ + L+ CP L L ++ +DL+ + ++ D + E L++ ++ + C ++ +F +++ PQ ++ S+ A++N RR+MED+HV D N L NL E Q QA FAVFDGHGG+DAA YA+ HL +L P EAL +A TDE F++K RE LR G T VV I+G L VAW+GDSQV+L + G AV+LM PHKP+R DE+ RIE+LGGCVV FG WRVNG L+V+R+IGD+E KPY+ G+ D ++G E+++ILACDG +DTV P +AV++V ++E DS+ A KLV A S DNI+++VV+ D N V S + ++ E S +++ GD KENH
Sbjct: 144 ITREEVEGESLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDLSAHYIPKETDGTEGTVEIETVKLARSVFSKLHEICCSWVKDF---PLRRRPQLYYETSIHAIKNMRRKMEDKHVCIPDFNMLFNL-EDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLRDMNKAVNVSEE--SDWTENSFQGGQEDGGDDKENH 531 The following BLAST results are available for this feature:
BLAST of TCONS_00069341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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