|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069339 ID=TCONS_00069339|Name=TCONS_00069339|organism=Clytia hemisphaerica|type=transcript|length=916bp
attcttaaaaataacaaaaacttgagcaaattgcTAAACCttcaacaaat
ataaaaaagaatccccttgatgaaaatcatgtgtttgatttgccaagttt
caaagtcattataaaaaagatatgacagaaattgaagcttgcaacatgCA
TTTTACTTCCTGCATTTACACTTGTGAGCCGTTTaaaccgccatcttgaa
acaccacatctatgttttctaaaaacaacacacgctaaaagtacACTAAA
ACTTAACCCGATCGGATAAATACTttagaaatcggggaaacacggCTTAC
GTAATGAGCATATCGGGGTAAcatgtttttttcgattttggtcTGATGAT
GATGGGGAAAAAGCCTATTTGAATAATCAGCTGTTGGCTGACTAAAAAGC
AGATAAAAAGTGTTCTTTCTATGTAATGAACGTACTGttttttttaggta
aaaaaaactaaagaaaCTACACAATCATGGATAATTTGAAACTTTTCGAT
GGAGAAATGGCTCAATGGATGGGTTCAACAGACTATAAGGGACCTCTTGG
ATTGACTGTCAAATTATACATACAAGAAGATCAAGTCGATGCTTTTCTTG
AAATCATGAGACAAATGATTGCTACAACTGTTGCTGAGAAAGGCTGCAAC
AAATATCTTCTTAACGAAGATTATAAAGACGCGTCCATCTTTTGGTTGAC
AGAGGAATGGGCATCAGTAGAGAATCTTGGAAACCATCTCAATCAacctt
tgtttaaagaaaaaatgggCCAAATCACACCAATGTTACGTGAGCCGAGA
GTGCTAGCTGCATGTTATAAAGATTGTGTATCTCAAAAGTGAAATTTGta
tatatgaaatattattAAACCATGAAGAAAACCTATAGAATATATCAAAT
TGCTTTCCAGCTTCGG Run BLAST on NCBI protein sequence of TCONS_00069339-protein >TCONS_00069339-protein ID=TCONS_00069339-protein|Name=TCONS_00069339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MDNLKLFDGEMAQWMGSTDYKGPLGLTVKLYIQEDQVDAFLEIMRQMIAT
TVAEKGCNKYLLNEDYKDASIFWLTEEWASVENLGNHLNQPLFKEKMGQI
TPMLREPRVLAACYKDCVSQK Run BLAST on NCBI transcript from alignment at scaffold_498:377707..378974+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069339 ID=TCONS_00069339|Name=TCONS_00069339|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at scaffold_498:377707..378974+ (Clytia hemisphaerica)
attcttaaaaataacaaaaacttgagcaaattgcTAAACCttcaacaaat
ataaaaaagaatccccttgatgaaaatcatgtgtttgatttgccaagttt
caaagtcattataaaaaagatatgacagaaattgaagcttgcaacatgCA
TTTTACTTCCTGCATTTACACTTGTGAGCCGTTTaaaccgccatcttgaa
acaccacatctatgttttctaaaaacaacacacgctaaaagtacACTAAA
ACTTAACCCGATCGGATAAATACTttagaaatcggggaaacacggCTTAC
GTAATGAGCATATCGGGGTAAcatgtttttttcgattttggtcTGATGAT
GATGGGGAAAAAGCCTATTTGAATAATCAGCTGTTGGCTGACTAAAAAGC
AGATAAAAAGTGTTCTTTCTATGTAATGAACGTACTGttttttttaggta
aaaaaaactaaagaaaCTACACAATCATGGATAATTTGAAACTTTTCGAT
GGAGAAATGGCTCAATGGATGGGTTCAACAGACTATAAGGGACCTCTTGG
ATTGACTGTCAAATTATACATACAAGAAGATCAAGTCGATGCTTTTCTTG
AAATCATGAGACAAATGATTGCTACAACTGTTGCTGAGAAAGGTTGGTTG
ATTAATTTACATCCCTGTTTGGTGGCCTTCTTAAAACATCCCTGTCCCAC
AGCTTTTCCGCGACACCTATCGGTCGAAACCTTTTTTCTACGcccgtttt
acaaaattcttttcACAATCTTTACCTATGCGATTAGTCTTTTTACCTTT
CTTACATATCATTATTCCTCCTTCACTACCCTTTTACGACATCCCTGTTT
CACAATATTTACATAAACAATGTCTCTGTTTCACAGCCATTTAAAGACTG
GCAATCTTTCGACAACACTCGTGGTTCACAACCTGTCAATACCTCCTAGT
TTCAAAACCTTAACCATTTTTCATATCTACCTTGAAACCCATAGGCTGCA
ACAAATATCTTCTTAACGAAGATTATAAAGACGCGTCCATCTTTTGGTTG
ACAGAGGAATGGGCATCAGTAGAGAATCTTGGAAACCATCTCAATCAacc
tttgtttaaagaaaaaatgggCCAAATCACACCAATGTTACGTGAGCCGA
GAGTGCTAGCTGCATGTTATAAAGATTGTGTATCTCAAAAGTGAAATTTG
tatatatgaaatattattAAACCATGAAGAAAACCTATAGAATATATCAA
ATTGCTTTCCAGCTTCGG Coding sequence (CDS) from alignment at scaffold_498:377707..378974+ >TCONS_00069339 ID=TCONS_00069339|Name=TCONS_00069339|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_498:377707..378974+ (Clytia hemisphaerica)
ATGGATAATTTGAAACTTTTCGATGGAGAAATGGCTCAATGGATGGGTTC
AACAGACTATAAGGGACCTCTTGGATTGACTGTCAAATTATACATACAAG
AAGATCAAGTCGATGCTTTTCTTGAAATCATGAGACAAATGATTGCTACA
ACTGTTGCTGAGAAAGGCTGCAACAAATATCTTCTTAACGAAGATTATAA
AGACGCGTCCATCTTTTGGTTGACAGAGGAATGGGCATCAGTAGAGAATC
TTGGAAACCATCTCAATCAacctttgtttaaagaaaaaatgggCCAAATC
ACACCAATGTTACGTGAGCCGAGAGTGCTAGCTGCATGTTATAAAGATTG
TGTATCTCAAAAGTGAATGGATAATTTGAAACTTTTCGATGGAGAAATGG
CTCAATGGATGGGTTCAACAGACTATAAGGGACCTCTTGGATTGACTGTC
AAATTATACATACAAGAAGATCAAGTCGATGCTTTTCTTGAAATCATGAG
ACAAATGATTGCTACAACTGTTGCTGAGAAAGGCTGCAACAAATATCTTC
TTAACGAAGATTATAAAGACGCGTCCATCTTTTGGTTGACAGAGGAATGG
GCATCAGTAGAGAATCTTGGAAACCATCTCAATCAacctttgtttaaaga
aaaaatgggCCAAATCACACCAATGTTACGTGAGCCGAGAGTGCTAGCTG
CATGTTATAAAGATTGTGTATCTCAAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069339-exon-scaffold_498-1491911889:377707..378348 | TCONS_00069339-exon-scaffold_498-1491911889:377707..378348 | Clytia hemisphaerica | exon |
| TCONS_00069339-exon-scaffold_498-1510915933:377707..378348 | TCONS_00069339-exon-scaffold_498-1510915933:377707..378348 | Clytia hemisphaerica | exon |
| TCONS_00069339-exon-scaffold_498-1575043694:377707..378348 | TCONS_00069339-exon-scaffold_498-1575043694:377707..378348 | Clytia hemisphaerica | exon |
| TCONS_00069339-exon-scaffold_498-1491911889:378701..378974 | TCONS_00069339-exon-scaffold_498-1491911889:378701..378974 | Clytia hemisphaerica | exon |
| TCONS_00069339-exon-scaffold_498-1510915933:378701..378974 | TCONS_00069339-exon-scaffold_498-1510915933:378701..378974 | Clytia hemisphaerica | exon |
| TCONS_00069339-exon-scaffold_498-1575043694:378701..378974 | TCONS_00069339-exon-scaffold_498-1575043694:378701..378974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:377707..378974 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
