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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069330 ID=TCONS_00069330|Name=TCONS_00069330|organism=Clytia hemisphaerica|type=transcript|length=2678bp
TGAGgcttctaactttttttttgaaaagctttcaaaatgaatgaaaaggg
ttttaaattttaaatgcaAGAATGTATAAATAATTGAATAAATTGTTGAA
ATGATGGTGTGGTTTAGGATTATGGTTTTAAGCTTTCTTGCTTATATGGT
GACGACCCAAGAGCTACAAAAAGCACATTTTCAGGCTTATGGATCTGTCA
CCAACAAAGCAACACTGAACGCTACTAACGAACAATTTGCATCACCGGTT
CACATCGCAAACGCTCAAAACTTCACCGAAGGTGTTAAGGAATCGAATGA
ACACAAGAGAGTGCAAAGGCAGGCTAAAAAGCGGACCATTGTAGCCTGGG
TTCCAGCTCAAATGAAACATCATGGAcatcaaatgaagaaaaatagaCGT
AGTAACATTTTACAGACCACCAGACGAGAAACAAAGACTTTGGGTGGATT
TTTAAGCAAGTTTTTGAAACACAAGAGAAACAAAATCAGACGTAAAAATG
GAAAGAGGAGTTCTGTTCATCATCGAATAGCAAAGAAACGAAAAAGAAGC
AAAGTTAAGCATTTGaagaataaaagacattcaaaaGTAGGTGACAATGA
AGTAAAGAACGCTGTTGCCACACTAGAGTCGTTGTTGCTAGAAAAACAAA
GACTCGCTAGTCATCAAAAGCCACTCCGTCATGTCAttgaaagaagaaat
aaaatacGGACCAGATATGACGATCAGGATGTATTTTCCAAACCAATTGA
CCTAACAACAAGTTGGTTTAAACGAGACTTAAAAGCCACCAGTGATGACT
ATTATCCATCTCCACAGATCTACAAAGCACCTATCCGTGACCAGAACGAA
ATTCGGAGCCAAATCTCACAGACCTCAAATaacaaagatgtaaaagcaca
GACTAGATCAGCATTCAAAAGCCCCGAGGAACTTGAAAAAGAGTTGATTG
CTAAAGTGAAAAAAGCTAAGAGACTTTTGAAGGAGAATTTTGTGGATAAA
AAGAATAAGACACTGGATGAAGACACGAAAGTAGATTCAATACTGTATGa
taaatatcaaaaacaaaatgtaGCATTGACTCGTAAATTAGGTCATATTC
TAAACGACTCCAAAGCTGTTGATAACGTATTGAATAAACTAGACAACGAA
GATGTCAAAAAGGAGGAAGAGTTGAACAAGAAATATAAAGTGATTACCAC
AACTGCTGACGATATCTATTCTAAAGATAAAGAGATTCTAGAAGAACAGC
TTGACCGTGCCAATAGTACAGCTATTGATGATTTAAGAAGAGATAAGACA
GACCTGGCGAATAACGGTGATGGAGGATACATTGATGAGGAGCCTGTTGC
AAGGGATTCAGCCCCGAGGAGTGGATTTGCGTCCAGAAATACAACCCAAG
ATGAAGATCCACATTCAAAATTAGGATTCAAAGCTAGATCTTATAAGAAT
TCTTCCAGTGTTGAGACGGTTGATTATGCACGAAATTCAACCACATCAGT
TCCGGATCACGCCAAAGCTGAATCTGAACTTCATAGTATGATCGATTTAA
CGACTTCGACTGATTTAAAGAATGCTGTATCTCCTTATGAGAGATCTAAT
ACGACCAGTACGGAACAAACAGCTAATGAAAATACTGAAGAACCAGAAAC
AGATGATTCTATATATCCAGAAGCGCCAGTAACAAAAACGTCCAAAATAA
TTGATGAGGATAATGGGAGTGGTCAGATTCCCAAAGGATTTGCTTCGCCT
GGAAATGATGATAAGATGGAATTAAATTCAGATGAGAAATCTTTGACGAA
TTCAAACCCAGAAGATTATTATTTAGCATATGAAAAAGCAGAATATGGCA
ATGCTGCAGATAAAAATATCAAGGAAGATAAGGATGTGAAAACTTTGGCA
AAACCAGGCAAAGATGGAGATTCGGATGCGAAGTTATCAGAATCGAAAAC
CAAGGGTGAGGAAGAGACtaaagagaagaaagaagagaagGATAAGGAAA
ATTCCAAGGTGGAGGATGCAGAAAAAGACGAATCAACGAACAAAGACTCG
GGAAGCGATTCAAAGAAATCGTcgaaagaaaacgaaagtgaaagtgtaaG
CAACAAAGATGACAAGAAGGTCTCAGATGATAAAGACGCAGAATTAAAGa
agcaaaaattaaaagaagCAAATAGCAGAATCACACACGTTCAACTGGCT
GGTCCAAACAGCATGGGATTCGGGTTAGCTCTTAATAATAACACGTTCCA
AAATGCTTTAACCAACAATACAAAGGAGAAATCGAATAAAGATGGGACGA
AGGTGAAAGGAGACAAAGAAGGAAAGGAGGAGACTGGAGTCTTGAAATTG
AAAGATGAGGAGAGTAAAACTAACGAGGAAAAAGATGAAGAGAAGAAGCT
ACGAAAAGACGAAGAGGATGAAGAAATGAAAGAGAAAAAGGTTTCCGAGG
ATAAGAAACTTGGTTCTGAAACCTCGAAGATGAATAACGAGGAGAGAAAA
ACTGACGAGGAAAAAGATGAAGAGAAGAAGCTACGAAAAGACGAAGAGGA
TGAGGAAATGAAAGAGAAAAAGGTTTCCGAGGATAAGAAACTTGGTTCTG
AAACCTTGAAGATGAATAATGAGGAGAGAAAAACTGACGAGGAAAAAGAT
GAAGAGAAGAAGCTACTAAAAGATGAAC Run BLAST on NCBI transcript from alignment at scaffold_498:107250..114092+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069330 ID=TCONS_00069330|Name=TCONS_00069330|organism=Clytia hemisphaerica|type=transcript|length=6843bp|location=Sequence derived from alignment at scaffold_498:107250..114092+ (Clytia hemisphaerica)
TGAGgcttctaactttttttttgaaaagctttcaaaatgaatgaaaaggg
ttttaaattttaaatgcaAGAATGTATAAATAATTGAATAAATTGTTGAA
ATGATGGTGTGGTTTAGGATTATGGTTTTAAGCTTTCTTGCTTATATGGT
GACGACCCAAGAGCTACAAAAAGCACATTTTCAGGTAATTAAAGTTTcct
tttttacaagtttgtgcAATTCGGTTTTGGAACTATACCAATTTACAGGT
CAACGGGGACATCATAAACGGACTGAAGCTTTCATAAAGTGACATTTGAC
TGAGCAATTTTGTATCATACGTATATTACAATAAAANCATCATAAACGGA
CTGAAGCTTTCATATGGTGACATTTGACTGAGCAATTTTGTATCATACGC
ATATTACAATAAACTTTAACAATAGATGACGAAATCGCAACTGgaaaatt
ttgagataaatttacGTAATTTACTTTCTGACTGATAATGTGTGCGTTCT
AATTTGCGTATTGCttgattgaatttttgtttGACGACACAATAAGATGC
AATTTTACATATAGCATGATTACCCTCAAAATACATTCGATGACATTTAT
CACTATCAGAGAACATTTTGACATACTAAATCTCCCCTACATTTTGACTA
CTGCTGCATGATTACTGATCTATCGACGATTGACTGAAACCACTTCTACC
GcatcaaaaaataataacaacacCAATGTATTGACCAACTGCAAGCTGCA
GTATCATTACTGTTGCATATATCACAAACTTTAAAAACTTATTTTACTGT
TGCACGATTCATTGACGTGAACTCTTGTCAAAGCACACGTTTTAGCCATT
GTTCTCCGCCAATCTCGCACCCAGAGCTACTTGCatcacttttttgattt
tactgatagaCGTGATCACCTTTCGTGAGTGCtgtcagaatcataaaaaa
gcgaattaagggactgggttcgagtttggttCTGAACCTACACTATTTTC
TATGAAAACGTAAATACACTCCATATGATGCATGATCATTTGATGATTTG
GTGgaactaaaaaaagaaaatccaaaGTGTTTTGAAATATAGCTTTGCAT
GACGTATAGAGTTTTACAAACGACAAACGACAAACGACAAAACATGAAAT
CGCTTCAATCTCAGTAAAACCAATCTTCAATCTGATGAATattatgaata
tttttaaatacttCCATCACAGCTGATTCACGATACTGCACGAACTTAAC
GAGACTGGATGTTGCATGATTAATAGTCACGATAAAATAAGATACTCGAC
AAAACGCAAAAACAGAAACGTTTTCGACATGCTATTCTTGCTATCTGGAT
AGTTGAATCATAGTTAAAAACCAACTTCTTCTGGTTTCATTTTACAGATC
GATCACGAAGCTGGACGTTTGAAAATCGAAGCCAGTAAAGATGAAGCTGA
TATTGATTTTGGAAATGATAAAATTGATTTGCTGTTAAAACCCGGTGATG
TTAAACGTCCGGCAGTTGAAGTAGCTGATATTTTCGGGAACGGTAAAGAT
AAAACTCGAAATAATATTCATGAGGAGCCTCAAGCGAAAACATTGGATGA
GCCTGTGAGGAATATTACATGGAAAGGGAGAATAAACGAAGAAGATAGAG
GACTAGATGCTGATGCACatgttttgaaaacattgaaaGTACTACGAGAA
ATGGTTTTATCCGAGAGAGAACGAAACGAATCGAAGAAGAAAACTCCTCG
ATTTCATTCGAATGATGAAACATTAGATCAAGCGAATTCGATTATCGATA
AAGTCGAGAAAACAAATAATGGTGATAGTTCTGAAGACTATGAAGAGGAG
CATCCGGAAGATGCGAAATATGCCGAAAAAGCAAAAGAGATTCTAAAAGA
CGATGCGATTGAATCATATACAAATAACACTAAAATTGAAGGTTCGAACT
TTACCGATGAAAGTAATGTCACTTCAGTTGATGTTGATTCCACGTCTTCG
TCAACAAATTTGATAAGCGAGCCCAACAATTTAACTCAAATTGACTTATC
GagtaaaaaacatttaaatgaCACTGGTGACTCATCTAAAAAAGAACCCA
GTGGTTCGCAAATGAGTGCTGTTGGAGGGACTACGTTAGAGCAGaaaaaa
catatttcgaaaTTTATCACAGATACTTTTGGTATTGATCTTACCAAAGT
TGCAAGTGGCAACAATGCAAAATCCACCTCCACGAGTGGAAATTTGCAAT
CTTCTAGTGAAAGTGCAAAAAACATCACTAGTGAAAATAAAATTGGGAAA
TCTTCAGACAATATAGAAACTTCTGAAAACGCTCATACAATCGTAGCACT
TAAACAGCCTGAGGCAAAAAATAAGCAATCGCATCAAAATGCTACTGTAA
ATGTATCCAATGTAAATGAACATAATACTGACCGGAATAATTCTCTGCAT
GGTCCTGAAAATAAAACAGTGAGTATAATGGAAGAACAGAAGATACCAGA
TAAATTTTCGAAAGACAACAAAAGTGCTTTTGGTACATCCCAAACTAAGA
ATTCTACACAAATAGAAAACCATGTGATTGACAATTCTACGCAGAAAGAA
AATGCTGATTTATCGGTTCCGTATATTAATAGAACCCTGGACCATGAAGA
TAAAATTGCAGACCAGAAGGTCGCTAAAGCATTGGGATTGACAGAAAAAG
AGGACCAGATAGATGAAGCAGCAAATAAAatagagaaaattaaaaaagca
aTAAGTCGATTTGTTGAAAGTTCGAATCCTATTGAAGTCGATACTGATAA
AGACGCAAAGGCTAATGGACAAAATACAGACCCGAATAAGGTgcaaaata
cagaccagaataaagacaaagaaaataacaataaaacaattttcattGAC
GGGCGTGAAAGCGCTAATGGTGATAAAGATAAAACTTTTAAGGAAGATTC
GACAAAACAACACAAACAAAACAATGGAActcaagaagaaaaaattactg
AAAGTTTTAAAACTGGAACCACTTCTAACAACAAGAAACCAAATGATAAT
AATGTCCATTCTAGTATGATTTCCAAAGCTGACGGAACGTTGCCTAAGAA
AGCTTTCCATAATAATACTAGCAACATAAACGAAAGCAAGGAAAAACAGA
TTATGGGTACAGCAAAACTAGCTAATGATAGTAGAAATGTGAATACCGAT
GAAAAACAAACTGCTTCCCCGAAAGAAGTGACGAATGCTGAAATGCCTGC
GATAAATCTGGACGAATTATCGATCGATCGGGAGTTAGAGCAAGTACAAA
AAGCGTCAGAAATTTTATATGGTCAACTGTCTAAGATGAATCCTACTCCA
GATAGTCCTGAAGAGAAGGTAATTATTGGTTGGTCATAGTCTTGGTCATT
GAGTTTAAattccgaagggctagagtagaatctctaacctttcccaggca
agaaaaagggAAACCACTTCTTTCCCacctagaacgcgccgcaatcataa
taagtggcttcatttcccatccaggagtctcgagtatAGCCCTTCGGCCA
AGCCTGATGGCAAGTCAATGGTCGTGGTCGTATTGATTCCTAGCCCGGAA
ACCTGGCGACGAAAACCGGTTTGCTGAATCCGatctttctgatttttatg
ATGCCGAAGACTTCAGCAACTGGTTTGGTCGCCAAAGCAGACCTAGCACA
GTATCTTGATTGGTTTAGAAACTGGAAAAGCATTTTTTACGCGTAATGAC
TTATTAGGGAATTCTCTCTATCACGTCATCTGCCTCTTTTGAAGCCAGAT
CGTCTGGCTAGCTAATTTTGTGTATAAAAAGAACACAGAAAGTCTCTTTT
ATTCGAGGTCAAATTCTTCACTGCTATcagttttaatattttcttgattt
tcccAATGACGTCCCAATAAAGGTAGAGCGGGTTTCCTTTATACAGGTAT
CTGATGAATGAAAACTAATAGCCGACAGACTATTAAGACACTTTATGATG
GAGTGCTAAAAGTTGCACTTATAAATAAGAATTTAATATAGGGCAATAAA
AAAAGACCTTTCAAGAAAATATTGCCGACTAAAATTGCTACACAGAAATT
TTTCCCGGGCAACTTGTCTCCCTATAGGTAGGCAAAATTCATTTAAAGCA
CAAGCTACAATAATTGCAATAATGTCAATAATCTCACCAGCCATACACGA
ATGGGAAACAcaaaatttattcgaattatggaaatcTCGTGTTATGGAGG
TTTTCTAAGGCATTGTTACCTAAGGGGACCAGAAATCTTGTTCGAGTTAG
CGGATCGAAATTAAGAGACCCCACTGTAATTTGTTTCTCTTGTTTACAGG
CTTATGGATCTGTCACCAACAAAGCAACACTGAACGCTACTAACGAACAA
TTTGCATCACCGGTTCACATCGCAAACGCTCAAAACTTCACCGAAGGTGT
TAAGGAATCGAATGAACACAAGAGAGTGCAAAGGCAGGCTAAAAAGCGGA
CCATTGTAGCCTGGGTTCCAGCTCAAATGAAACATCATGGAcatcaaatg
aagaaaaatagaCGTAGTAACATTTTACAGACCACCAGACGAGAAACAAA
GACTTTGGGTGGATTTTTAAGCAAGTTTTTGAAACACAAGAGAAACAAAA
TCAGACGTAAAAATGGAAAGAGGAGTTCTGTTCATCATCGAATAGCAAAG
AAACGAAAAAGAAGCAAAGTTAAGCATTTGaagaataaaagacattcaaa
aGTAGGTGACAATGAAGTAAAGAACGCTGTTGCCACACTAGAGTCGTTGT
TGCTAGAAAAACAAAGACTCGCTAGTCATCAAAAGCCACTCCGTCATGTC
AttgaaagaagaaataaaatacGGACCAGATATGACGATCAGGATGTATT
TTCCAAACCAATTGACCTAACAACAAGTTGGTTTAAACGAGACTTAAAAG
CCACCAGTGATGACTATTATCCATCTCCACAGATCTACAAAGCACCTATC
CGTGACCAGAACGAAATTCGGAGCCAAATCTCACAGACCTCAAATaacaa
agatgtaaaagcacaGACTAGATCAGCATTCAAAAGCCCCGAGGAACTTG
AAAAAGAGTTGATTGCTAAAGTGAAAAAAGCTAAGAGACTTTTGAAGGAG
AATTTTGTGGATAAAAAGAATAAGACACTGGATGAAGACACGAAAGTAGA
TTCAATACTGTATGataaatatcaaaaacaaaatgtaGCATTGACTCGTA
AATTAGGTCATATTCTAAACGACTCCAAAGCTGTTGATAACGTATTGAAT
AAACTAGACAACGAAGATGTCAAAAAGGAGGAAGAGTTGAACAAGAAATA
TAAAGTGATTACCACAACTGCTGACGATATCTATTCTAAAGATAAAGAGA
TTCTAGAAGAACAGCTTGACCGTGCCAATAGTACAGCTATTGATGATTTA
AGAAGAGATAAGACAGACCTGGCGAATAACGGTGATGGAGGATACATTGA
TGAGGAGCCTGTTGCAAGGGATTCAGCCCCGAGGAGTGGATTTGCGTCCA
GAAATACAACCCAAGATGAAGATCCACATTCAAAATTAGGATTCAAAGCT
AGATCTTATAAGAATTCTTCCAGTGTTGAGACGGTTGATTATGCACGAAA
TTCAACCACATCAGTTCCGGATCACGCCAAAGCTGAATCTGAACTTCATA
GTATGATCGATTTAACGACTTCGACTGATTTAAAGAATGCTGTATCTCCT
TATGAGAGATCTAATACGACCAGTACGGAACAAACAGCTAATGAAAATAC
TGAAGAACCAGAAACAGATGATTCTATATATCCAGAAGCGCCAGTAACAA
AAACGTCCAAAATAATTGATGAGGATAATGGGAGTGGTCAGATTCCCAAA
GGATTTGCTTCGCCTGGAAATGATGATAAGATGGAATTAAATTCAGATGA
GAAATCTTTGACGAATTCAAACCCAGAAGATTATTATTTAGCATATGAAA
AAGCAGAATATGGCAATGCTGCAGATAAAAATATCAAGGAAGATAAGGAT
GTGAAAACTTTGGCAAAACCAGGCAAAGATGGAGATTCGGATGCGAAGTT
ATCAGAATCGAAAACCAAGGGTGAGGAAGAGACtaaagagaagaaagaag
agaagGATAAGGAAAATTCCAAGGTGGAGGATGCAGAAAAAGACGAATCA
ACGAACAAAGACTCGGGAAGCGATTCAAAGAAATCGTcgaaagaaaacga
aagtgaaagtgtaaGCAACAAAGATGACAAGAAGGTCTCAGATGATAAAG
ACGCAGAATTAAAGaagcaaaaattaaaagaagCAAATAGCAGAATCACA
CACGTTCAACTGGCTGGTCCAAACAGCATGGGATTCGGGTTAGCTCTTAA
TAATAACACGTTCCAAAATGCTTTAACCAACAATACAAAGGAGAAATCGA
ATAAAGATGGGACGAAGGTGAAAGGAGACAAAGAAGGAAAGGAGGAGACT
GGAGTCTTGAAATTGAAAGATGAGGAGAGTAAAACTAACGAGGAAAAAGA
TGAAGAGAAGAAGCTACGAAAAGACGAAGAGGATGAAGAAATGAAAGAGA
AAAAGGTTTCCGAGGATAAGAAACTTGGTTCTGAAACCTCGAAGATGAAT
AACGAGGAGAGAAAAACTGACGAGGAAAAAGATGAAGAGAAGAAGCTACG
AAAAGACGAAGAGGATGAGGAAATGAAAGAGAAAAAGGTTTCCGAGGATA
AGAAACTTGGTTCTGAAACCTTGAAGATGAATAATGAGGAGAGAAAAACT
GACGAGGAAAAAGATGAAGAGAAGAAGCTACTAAAAGATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069330-exon-scaffold_498-1491911889:107250..107433 | TCONS_00069330-exon-scaffold_498-1491911889:107250..107433 | Clytia hemisphaerica | exon |
| TCONS_00069330-exon-scaffold_498-1510915933:107250..107433 | TCONS_00069330-exon-scaffold_498-1510915933:107250..107433 | Clytia hemisphaerica | exon |
| TCONS_00069330-exon-scaffold_498-1575043694:107250..107433 | TCONS_00069330-exon-scaffold_498-1575043694:107250..107433 | Clytia hemisphaerica | exon |
| TCONS_00069330-exon-scaffold_498-1491911889:111599..114092 | TCONS_00069330-exon-scaffold_498-1491911889:111599..114092 | Clytia hemisphaerica | exon |
| TCONS_00069330-exon-scaffold_498-1510915933:111599..114092 | TCONS_00069330-exon-scaffold_498-1510915933:111599..114092 | Clytia hemisphaerica | exon |
| TCONS_00069330-exon-scaffold_498-1575043694:111599..114092 | TCONS_00069330-exon-scaffold_498-1575043694:111599..114092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:107250..114092 + |
Blast
The following BLAST results are available for this feature:
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