TCONS_00069319 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069319
Unique Name	TCONS_00069319
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	612

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_497:106291..110243+

transcript sequence

>TCONS_00069319 ID=TCONS_00069319|Name=TCONS_00069319|organism=Clytia hemisphaerica|type=transcript|length=612bp
ttaaaaatgtattttaaaaGATTACTGAGTGATTTTCAATTGTTCTTTAG
ATCTGGATTTTCCAACAGTTTTGGCATCACAATTGACTTATGAAGGTCTT
ATTGCAGAATGTTTGGTATCAAAACAGGTGTTGTTAAATTCGAGAAGAAC
GTCACAAGCCAAGATGCACCTTTAACTTTGAGCTTGAATTCTACggataa
aGTTTTCGCTGAGATTCGAAGGATGCATATCACAGGGGTGTTTCCCCTGT
TGAGTTCAAAAGCAAGACAATTGCAGAGTGGATATGATaaaaaagataat
TTATCTTCGGTGTCGGACTTCAAGCAATTTGTTTCGGAAGATTTGAAGGA
ATTGAAATCACAACACAAATCATTAGCACTACACATTGGCGCATGTGAGG
CCatcatgaagaagaaaacggaGGGAAGCTTTGAAGATGTATTGGCTATC
GAGCAAGCAATGTTTGAGGACACGCAATATAAAGATTCGTTGAATTTTGT
TGAAACGTGTATACAGAGACagAACTGCTTGAGGATGATGAGCTTGCTTT
CAGTTTGCAAAGGAGGTATCGATTCAAAAACATACAAAAGTTTGCGGACA
CAATTTTTACAT

Run BLAST on NCBI

transcript from alignment at scaffold_497:106291..110243+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069319 ID=TCONS_00069319|Name=TCONS_00069319|organism=Clytia hemisphaerica|type=transcript|length=3953bp|location=Sequence derived from alignment at scaffold_497:106291..110243+ (Clytia hemisphaerica)
ttaaaaatgtattttaaaaGATTACTGAGTGATTTTCAATTGTTCTTTAG
ATCTGGATTTTCCAACAGTTTTGGCATCACAATTGACTTATGAAGGTCTT
ATTGCAGAATGTTTGGTATCAAAACAGGTGCGtgcttttgatgtttttat
tttagaggTTTGCACAATTTTGAATTGAGAACCTCATCTAATTCGTGGTT
ACGGTGAACAATCTTTTGGGAACAGGAGTACGATCTAATAGGTAAATATT
taccgatttttttttttactataaaaTAGGCAAGTCGATATTTGGTTGAA
TCAGCCCTGATTTCCCAAGATTTATTGCGCCCAGAGATGACCTTTTTAAA
ACTAAAGCATTCACGTTTTAGGTGTTGTTAAATTCGAGAAGAACGTCACA
AGCCAAGATGCACCTTTAACTTTGAGCTTGAATTCTACggataaagtaaa
aaaaaactttgtcaaAGTTTAAATTATCCTTGGATTCCCGAGGACTAAGA
GATTCTAAAACCATGTTTAGACGTTACAGTTCCGTATCGCTCCGGTGTTG
TATTTGTTACGGATAGCAAGTGTTCAAACtcatttcggaacgtttcggag
taAGAAAatggagcagttccgttccgatgaaaatagaggagcgaaaccgt
ttcgatctgttttgctttgtaaggtcttcttttttgacggtTTTAAATTT
TCGTTCACACAGTGTTttggaaccgtttcgtttcggagcgaaacggaacg
tagcgtgtgaacgtggtctTAAAATTTAGCTTCCTCGGTATAAAATAACG
AATTTGTTACTAATGCCGTCGTTCTAGATAAGGTTCCACTTTTTGGAGTA
GGATTCCACTTGTTTTTCCGGGTTATCCCCTTTGTTTCTTCCGAGACAGC
CGGCTGAAATAGTAAATCGTTTTTCTAGAGGTTGACACGGAAAACAGCTG
GTATATACGGAAATTGACTAAACTTTCCGAAGCTCATTTTTTAATTAGCA
TGAAATTTAGTCTTTTTCCGCTTGAAATTAGCAGTTGAATCTTTTCTTGC
ATCTATCAAgtttgttttaaatttattaTATAAAGTTTCCGAGAATTTTC
GATTGTTTTGTACctaattcattaaaaaaaaacactgctTGTTTTTGgcc
ttttgctttttctttcttgttatCCCTTTTCCCTTTACTCTGTAGGAAAC
AATGAAttaaaattccccaaaaaacgGTGTTACAGgtccggcggaacaac
cgtaaaagtggggaggctgaaagctcaaaatgagatgaaattcgctagga
atttgagaaaaatttgctcaaaagtggaaAGGCTTAAGTTTCCCCAGTCT
CCCCGTTTCCGCCGGGCCTGTACTATCAAGTttgattgaatttatttttg
gtGTTAATTCGAATTTCACTATGCCTCTAAGTCTTCGCATaacattttat
ttcatatactttattgaatatttttagGTTTTCGCTGAGATTCGAAGGAT
GCATATCACAGGGGTGTTTCCCCTGTTGAGTTCAAAAGCAAGACAATTGC
AGAGTGGATATGATGTATGAATTTCcatttaattttatttcatttttact
ttGCTTTAGCGTTAATCTCCATGATTTTAtaggattagaaccattgacgG
GCTAGACACGAAACTTCTGGATGGGAAAATGgtgccacttatttcccatc
ctaaACGCGTAACCTGCGTGTTTTCCCAAAAACgccaaattgaaaagaaa
aaatatcacCAGAAAAAATTATGccgcgtgaaaacaaagaaagagataga
ttcaatccgtcattctaAACGAGGCGCAattcttaaggcttcactttttc
ttgctttaggAATGTTGAAATTcatctctagccccttcggtGATTTAAAC
TCTATGACTTTAAACTCAATCATTCAGGATAAAACCCATCTTGATCACGT
TTAACTTGCCATATCTATGGAAATAGAAACAAGCATATTATTTTGAGAAG
CGCAAAGTTCACCCCACTTAACGTTATCTTGTTTGGTTATTGGTTTActg
gaaaatatcaaaaatgtttttttccttttagaaaaaagataatTTATCTT
CGGTGTCGGACTTCAAGCAATTTGTTTCGGAAGATTTGAAGGAATTGAAA
TCACAACACAAATCATTAGCACTACGTAAGAAATCCAAGTTTAATGAAAA
CTTTGTTTGTACTGGGGAACTTGTGGTATAAGCACGGCTGTTTGCAACTG
AAGCTTTTCTACCTTATTGGAATCATTTTTGCGGGAACTGATATTCGcgg
tcaaaaataaaaatcggaaaattgcatttcgtgggttttaatttttgcgg
ttttgcccttttttggaaaaattattttcatcttcctagggatttttcta
atttttcgataaaattggaaaaaaatgtatttCGCGGGTTAAGGTAGATA
AGGTAGATTGCGAAGTataaaaatatcacttttagAATAAATTAAAACAT
TATCTAAATTAGAATTCCATTCTTTCTGTCAGACATTGGCGCATGTGAGG
CCatcatgaagaagaaaacggaGGGAAGCTTTGAAGATGTATTGGCTATC
GAGCAAGGtatttttttactctttactcGCATTAGAGGCAGAATTTTGAT
GTCATTTCCTTGTGCTGCCAAGAGTTGATAAGTGCAACCCTTATAGGTTT
ATAGGTTTAAAGGTGTATTAGGCTGGACAGAAATATGCGCTGATAGATAC
AGGAAAAATGGCATCCCCTGGTAGAATGTAGTGTTAAATTCTCTCaaata
tttctctaattcgaaaaagATTCTCGATCCTTTgaagatcaaattagaga
gagtcaactgcgCTATATCTTGTCGAAATGTTGATGTTTTTGTCATCGAt
aagttattacttttttcatattctttTTTAAGCAATGTTTGAGGACACGC
AATATAAAGATTCGTTGAATTTTGTTGAAACGTGTATACAGAGACaggta
ttttgtttttattaaacctcattatttttgttattttgttgtcCTAAAAC
TtgaagttttattttgtttattaagAATTGAAAAATGCCTTGATTATGCA
GGGCACACTTTATAATGGCTCTACATGCATgtaattaaaaaatcttgata
TTTCAATATAATCATAAAAAACACTGCATGCAGCTGCATGTAAACACTAC
TTATTCCTTTGAAGAGGATCTCTCTATTGTGTTCTTTGAACTGCGCCCAA
CTCCTTCATCCCTCTTTTTCACTCGAATTTCTTGCAATGAGTACAGAACT
TGCGTTTACGTGTCATGAGTAAGCATGAGTGTATCCAACTGATGATTTAC
TAAGCCAGGATTTTCTTTACTCAAGTAAGTTATAGGCTTAATCCACTCCA
AAAACAATTATGATTTGGAGAATAACAAAAAGGCAGCAATCATTCTTCTC
TTGAATATTACAGTGATAAATTATTTAAGCAGGTAATGGGACTGGGGGCT
GCCCTTGATTGCTCAACGATTTGATGGACCTAAATTTTAAGGGGGGCTCT
TTTTTAGCCTGTGGGCTGAACCTGGACTGACGTTATGCACACGTTACGTC
TTTGAAGGCTACTCCTTTCTTGTTGCCCCTAAATAATTGTTTTCTTCTAT
TTTAGAACTGCTTGAGGATGATGAGCTTGCTTTCAGTTTGCAAAGGAGGT
ACAGTAAATTCTTGTGATATTTCGCCTAACGGTTCAACAAATTTTATCCC
AATCTCAAATCTTTGAAGTCTAAATTGACCCCTTACCCAACCTGATGGTA
ATTTTCAGGGGTTTTTTTTCCAACTACACCTCAAAACCCTACTGCTCTAA
CAGTATTACCGATGGACAATAGATTAGTGAAactaaatttctttcttttt
ctaaagGTATCGATTCAAAAACATACAAAAGTTTGCGGACACAATTTTTA
CAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043197	XLOC_043197	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_497	supercontig	scaffold_497:106291..110243 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.98316	4.65231	1.56	2.08132	4.08675	4.68243	7.51255	8.59297	5.37202	4.08331	6.3006	4.9097	4.79409	5.54012	2.01798	2.90299	3.13827	3.03354	2.38294	1.24613	1.75818	1.55282	3.29581	2.61529	6.14182	7.90386	1.6667	1.17164	1.66035	1.43084

Blast

[Close]

BLAST of TCONS_00069319 vs. Swiss-Prot (Human)
Match: VP33B (Vacuolar protein sorting-associated protein 33B OS=Homo sapiens GN=VPS33B PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.450e-41
Identity = 78/171 (45.61%), Postives = 110/171 (64.33%), Query Frame = 1

Query:  112 FGIKTGVVKFEKNVTSQDAPLTLSLNSTDKVFAEIRRMHITGVFPLLSSKARQLQSGYDKKDNLSSVSDFKQFVSEDLKELKSQHKSLALHIGACEAIMKKKTEGSFEDVLAIEQAMFEDTQYKDSLNFVETCIQRQ----NCLRMMSLLSVCKGGIDSKTYKSLRTQFLH 612
            F IK G V F   VTS D  L + LN+ DKVF EIR  H + VF  LS KAR LQ+ YD++  +  +   K FVS++LK LK +H+ L+LHIGACE+IMKKKT+  F++++  E A+ E    ++S +++E  I RQ      LR+M LLS+ + G+  K Y+SL+TQ+L 
Sbjct:  255 FRIKCGSVDFGPEVTSSDKSLKVLLNAEDKVFNEIRNEHFSNVFGFLSQKARNLQAQYDRRRGMD-IKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHALLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLKTQYLQ 424

The following BLAST results are available for this feature:

BLAST of TCONS_00069319 vs. Swiss-Prot (Human)

BLAST of TCONS_00069319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VP33B	4.450e-41	45.61	Vacuolar protein sorting-associated protein 33B OS...	[more]

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TCONS_00069319 (transcript) - C. hemisphaerica