TCONS_00069316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069316
Unique NameTCONS_00069316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069316 ID=TCONS_00069316|Name=TCONS_00069316|organism=Clytia hemisphaerica|type=transcript|length=307bp
ctgtaaaaaataaaagagcGGGTCACGTGCTAATCACGTGACCCGTGACT
ACTTATAGTTATATAACTCATCTTTGTTCTTCACAGGTTCATTGCCATGT
TGAATCCCCGTTATGTGAATTATTGGGTGTGTCCGGTTGAGTGGATTCCA
AATTGATAGGTCTCCTGTTGAGTGGACGTTGTTGAGTGGATCACCAAATT
GACTGAATGGATCACCGATTGATAAGACGGATGTTCGCTTGGATTGATGA
ACGATTCCGTGTGTTTGAAATTGAATGGGCGGGTTCCCGTTGAATGACGT
AGGACTC
Run BLAST on NCBI

transcript from alignment at scaffold_496:726708..727014

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069316 ID=TCONS_00069316|Name=TCONS_00069316|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_496:726708..727014 (Clytia hemisphaerica)
GAGTCCTACGTCATTCAACGGGAACCCGCCCATTCAATTTCAAACACACG
GAATCGTTCATCAATCCAAGCGAACATCCGTCTTATCAATCGGTGATCCA
TTCAGTCAATTTGGTGATCCACTCAACAACGTCCACTCAACAGGAGACCT
ATCAATTTGGAATCCACTCAACCGGACACACCCAATAATTCACATAACGG
GGATTCAACATGGCAATGAACCTGTGAAGAACAAAGATGAGTTATATAAC
TATAAGTAGTCACGGGTCACGTGATTAGCACGTGACCCgctcttttattt
tttacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043194XLOC_043194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069316-exon-scaffold_496-1491911889:726708..727014TCONS_00069316-exon-scaffold_496-1491911889:726708..727014Clytia hemisphaericaexon
TCONS_00069316-exon-scaffold_496-1510915933:726708..727014TCONS_00069316-exon-scaffold_496-1510915933:726708..727014Clytia hemisphaericaexon
TCONS_00069316-exon-scaffold_496-1575043694:726708..727014TCONS_00069316-exon-scaffold_496-1575043694:726708..727014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:726708..727014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44717	0.70561	1.63856	1.60308	6.66711	5.78315	5.5817	5.66098	0.609752	3.70386	11.9722	3.85523	2.40617	5.24755	9.03927	3.74793	3.53076	4.04904	1.15378	0	1.04941	2.04745	0.82965	1.13141	4.27285	5.89347	1.48827	2.11776	2.00781	0.409128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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