TCONS_00069310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069310
Unique NameTCONS_00069310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069310 ID=TCONS_00069310|Name=TCONS_00069310|organism=Clytia hemisphaerica|type=transcript|length=619bp
TAAAAGTTACAAATTGGAGTTTCATCAGAGACTTTGTCCTTGGTTGTAGT
ATTATCCGAAGATAAGGTTGCGTCGTTTTGTAAATCGcgttgaaatttag
attttaggaAATTAGTCCTACCCAGTTATATTCCATCAACAATCTTATTT
GAGGGTCTGTCGATAATAATATATGGGGTGATTGGAATGTGAGGGAGTGT
CCTTCTTGGAGTGGGTTGGGTTCCATTTAAGAAAGATTCAGTGGCTTCAA
CAGCTTCAGTGAATTGTAGGTGAATTCGTTATTTGAGCTTGTTGTACTGC
ATCTGTTTCATTTTTGTGAGTAAAATTTATGTTTTCGTCTTGACATGCCG
GGCATAGATAACAAAATCCAGGGATTTTAAAGATGAGATTACATAATTTC
tcatgttcattcaaaagattcATGCTTATCAGAAGTTTAAGATAGCATGG
CCGGTGCACTTCCTGCCCACACGCACCACAGCTAATGAGTGGTTTGTCAT
TGAGTTTGCATGAATATGATTCTTGACAAATCTGGCATAcatctgggaaa
atatttttgatcttCAAACATAATAGGTGGATTGCATCATCCTTATTAAG
GTTGTTAGATGGCAATGAT
Run BLAST on NCBI

protein sequence of TCONS_00069310-protein

>TCONS_00069310-protein ID=TCONS_00069310-protein|Name=TCONS_00069310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
SLPSNNLNKDDAIHLLCLKIKNIFPDVCQICQESYSCKLNDKPLISCGAC
GQEVHRPCYLKLLISMNLLNEHEKLCNLIFKIPGFCYLCPACQDENINFT
HKNETDAVQQAQITNSPTIH
Run BLAST on NCBI

transcript from alignment at scaffold_496:560961..561579

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069310 ID=TCONS_00069310|Name=TCONS_00069310|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_496:560961..561579 (Clytia hemisphaerica)
ATCATTGCCATCTAACAACCTTAATAAGGATGATGCAATCCACCTATTAT
GTTTGaagatcaaaaatattttcccagatgTATGCCAGATTTGTCAAGAA
TCATATTCATGCAAACTCAATGACAAACCACTCATTAGCTGTGGTGCGTG
TGGGCAGGAAGTGCACCGGCCATGCTATCTTAAACTTCTGATAAGCATga
atcttttgaatgaacatgaGAAATTATGTAATCTCATCTTTAAAATCCCT
GGATTTTGTTATCTATGCCCGGCATGTCAAGACGAAAACATAAATTTTAC
TCACAAAAATGAAACAGATGCAGTACAACAAGCTCAAATAACGAATTCAC
CTACAATTCACTGAAGCTGTTGAAGCCACTGAATCTTTCTTAAATGGAAC
CCAACCCACTCCAAGAAGGACACTCCCTCACATTCCAATCACCCCATATA
TTATTATCGACAGACCCTCAAATAAGATTGTTGATGGAATATAACTGGGT
AGGACTAATTtcctaaaatctaaatttcaacgCGATTTACAAAACGACGC
AACCTTATCTTCGGATAATACTACAACCAAGGACAAAGTCTCTGATGAAA
CTCCAATTTGTAACTTTTA

Coding sequence (CDS) from alignment at scaffold_496:560961..561579

>TCONS_00069310 ID=TCONS_00069310|Name=TCONS_00069310|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_496:560961..561579 (Clytia hemisphaerica)
TCATTGCCATCTAACAACCTTAATAAGGATGATGCAATCCACCTATTATG
TTTGaagatcaaaaatattttcccagatgTATGCCAGATTTGTCAAGAAT
CATATTCATGCAAACTCAATGACAAACCACTCATTAGCTGTGGTGCGTGT
GGGCAGGAAGTGCACCGGCCATGCTATCTTAAACTTCTGATAAGCATgaa
tcttttgaatgaacatgaGAAATTATGTAATCTCATCTTTAAAATCCCTG
GATTTTGTTATCTATGCCCGGCATGTCAAGACGAAAACATAAATTTTACT
CACAAAAATGAAACAGATGCAGTACAACAAGCTCAAATAACGAATTCACC
TACAATTCACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043188XLOC_043188Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069310-proteinTCONS_00069310-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069310-exon-scaffold_496-1491911889:560961..561579TCONS_00069310-exon-scaffold_496-1491911889:560961..561579Clytia hemisphaericaexon
TCONS_00069310-exon-scaffold_496-1510915933:560961..561579TCONS_00069310-exon-scaffold_496-1510915933:560961..561579Clytia hemisphaericaexon
TCONS_00069310-exon-scaffold_496-1575043694:560961..561579TCONS_00069310-exon-scaffold_496-1575043694:560961..561579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:560961..561579 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60666	2.48975	3.98676	1.37298	1.22774	1.47637	0.910412	1.7759	1.76994	1.83156	1.80862	2.05194	0.708082	0.371257	1.13137	0.518878	0.712899	1.35207	0.867256	1.28073	2.54896	1.70157	0.915171	0.346326	2.11353	1.29237	0.625152	1.51721	0.735823	1.18718
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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