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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069309 ID=TCONS_00069309|Name=TCONS_00069309|organism=Clytia hemisphaerica|type=transcript|length=2902bp
TTTAGGTTTtatcattttaagaaaataatgaaatgctCAATCGTGAACAT
TCTTCTATTGATGATGGCAACAATTGTCACATTTGTTCTGCCTGGAGCGG
CCAATGTTATCACTTTCGACAGTGTAAAGGATGCTTTGATTTTGGAAAAG
ACAGCTTTTGAGGAGCCATGTCAAACAGCTAAAAAACTGGATTCGTTCAT
CTCAGATAAAAATGATCTTCCAGATATTGATGAAGCAACAATGGATAAAC
TTAAAGAACAAGTGACATCGGCTAAAAGTGCAATCTGCAAGTtctacaaa
aaaacaaaattcattgtcgaaaaatctcaaaaattaggTAAAACACAAAT
GTTCAAAGATTgcgttgaaaaatttcaatgtgTTCAAATAGCACCAGCCA
TCCGAAATATGAACCAACATTTTGAGCAAAGNAAAAACAAAATTCCTTGt
cgaaaaatctcaaaaattaggTAAAACACAAATGTTCAAAGATTgcgttg
aaaaatttcaatgtgTTCAAATAGCACCAGCCATCCGAAATATGAACCAA
CATTTTGAGCAAAGAAAGGGTTTTGCCGAAGCAGTTAATATGACTATAGA
AATGTTACAAGATACGATTCCAAGCCAGCAGGAATCTCAAATCGTAATGG
TGAAATCCGTTTCGAAAATTATTGATGTCATTTGGGAGGTCTTGCTGCAA
CCAtactttccaaaaattattGTAAGCGTGTTTTCCACGGTTATTGGAAG
CGTGGTTCTTATCGCTATAGTGATTAGATTATTAGGTGCCGTTCGATTTA
TTTTAACGGGAATTTTTGGATTCCTTGTAATCCTTGGAATTGCTTTGTAT
GTATCAACAGTATCAGGCCACAGCAAAGAGTATCAGATCATCCAAGATAA
AATCGAATCGCTATCCAAAGTTTGCAAAGTTCATATCGAATCAGATACAA
GATTTTCTCTTATACTTCAAATGGTTAGAGTGACAGACAACATGCACTCT
TTTAAGAATATCTTGCACGATAGCATTAATTACGACAAGGTAGGCCGAGA
AGACACTCAACAAAGTTTTCAAGCGCTGCAAACCTTAAAACCACAAttag
aaaatgttatttttcagCTTGCTGAGCGCAAATACTCCAAACTAGAAATA
AAAGCAACGGAAATTTACAATAAATTCGATGGCGCAATCAAGGAATtgaa
aaatacattgaaaaaatcacGAAGATTTTATGGAACACTGAGAAATGCGG
TTAAAGCAACAATTCAGTCTGGAGAAGAAATTCCGTTGAGGGAAATATTG
ACATTCTTACGTAACACTGTCGACCGAAGCATCGAAATTCACGAGGAGTT
TGAAGAGCTGAGGACAAAGTTTAATGGATTATACACTGAAGTACATAGAC
TACGAGAAGATATAAGGAAAGCAACTGACTCGAATGACGATAAAAGATAC
TTGGTAAAGGCGATAGGTGCTGCTGTAAACGTTCTGGCTGCTATTGCCGC
GCCGCATGTTTATTTTCCAATAGTCGCGGTCACATCCCTAGCAGGAGGTG
GCTACATTGTCAAAAATGCTAAAGATGATAATGACGTGCTCCAAAGAGTC
AAAAGTGAAATGACAAATCTAGGAGAATATTCCAAGAAAATCGCTGAAAT
TATCGATGAGTTTGATGCAATGAAAACAGCAACATCCATAAATAATTTTC
CCGACTTAAAGCTTGATACAGAAGCGTACAAATATTATATGGAAGATTTA
CTTGATGTAGCAGAACAAAATCATAAAGAGATTGAAATGATGATTCGAAA
ACTGATGAATATTGGGAATTGATAGAATACACCCCTGTTTTAATAGACCA
CTGACACACCTGTTCCAGTGCCTCTTTAGAGTTTCAAAATTCACTGGGGT
GACCCAGAAGTTGATAGAATTTCAGTGAGTCAAATTTGAGTCTGTCTCAA
TATTATCTGCCATGGAGACAAAAAAAGACAGAAAAAGTTTTGACAGAATT
AGAATGAACTTGCAATTCTACAGTTGTTGAAAGGATATTAAGAAATagaa
aagatttgtaaaaaattagaaaatgaagctgaaaaatgaagaataaaaag
AATTGTAGAATTGTCTTATGATCTTCCTATTCACACTAGCAAATCTTTAA
TCTTAAGTGTTataaaaaattcagccaaaaaatGCAGCTTAAATATTTGT
CTGATTGACTATAAAATAGTTCttcaagaagttgattttttttcttctta
tatttttcatcttcatcatctaattctcttcttttttttctatttggtaa
TAATGCActcttgaaaatcttttttcacaCAACACACAAATGCTATTCAA
TTAGCCAAATTCTATCAAAGGTTTTTTTGCTCTAGTCTCTAGCTTTTTTT
CGTAGTTTTTGACTAACATTTGATAATATAGTATTTTTGTGCCGTGATCT
TTACAGTATATCTGCAAAGCCTATGCCTTTGCCTAGGTAGGTTCCTGTCC
TGTCCTAGCCAATAAACActttatatatatataactTAGATTTGTTTTAT
AGGCCGTACTGTATTAACAAGGACTCGGACCGGCCTCAGAAAACTCAGAC
CCTGGACCCTTATGAAAACCCCGATCCATCGTAAATCTTCGAGAAAAAAC
GGATCCCcttaaatttttgcgaaaacaCGGACCTCCCCACCTCGATTTTT
GCGAAAAGTGGACGACACTAATAAACCTACCGGTTGGTTCAAAACGCAGG
ACGCAAGACACAGGGCACAGGTCGCCGGACGCAGAACACATGAAACAGGA
TGCAGGTCATACACATTGCGTTTGAAGCCCAAAGGgactagagaggaatc
ttcaactttttcaagcaagaaaaatgAAGCCTTATGTTTGCCCTGTATTT
AG Run BLAST on NCBI protein sequence of TCONS_00069309-protein >TCONS_00069309-protein ID=TCONS_00069309-protein|Name=TCONS_00069309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MFKDCVEKFQCVQIAPAIRNMNQHFEQRKGFAEAVNMTIEMLQDTIPSQQ
ESQIVMVKSVSKIIDVIWEVLLQPYFPKIIVSVFSTVIGSVVLIAIVIRL
LGAVRFILTGIFGFLVILGIALYVSTVSGHSKEYQIIQDKIESLSKVCKV
HIESDTRFSLILQMVRVTDNMHSFKNILHDSINYDKVGREDTQQSFQALQ
TLKPQLENVIFQLAERKYSKLEIKATEIYNKFDGAIKELKNTLKKSRRFY
GTLRNAVKATIQSGEEIPLREILTFLRNTVDRSIEIHEEFEELRTKFNGL
YTEVHRLREDIRKATDSNDDKRYLVKAIGAAVNVLAAIAAPHVYFPIVAV
TSLAGGGYIVKNAKDDNDVLQRVKSEMTNLGEYSKKIAEIIDEFDAMKTA
TSINNFPDLKLDTEAYKYYMEDLLDVAEQNHKEIEMMIRKLMNIGN Run BLAST on NCBI transcript from alignment at scaffold_496:519287..522188 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069309 ID=TCONS_00069309|Name=TCONS_00069309|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at scaffold_496:519287..522188 (Clytia hemisphaerica)
CTAAATACAGGGCAAACATAAGGCTTcatttttcttgcttgaaaaagttg
aagattcctctctagtcCCTTTGGGCTTCAAACGCAATGTGTATGACCTG
CATCCTGTTTCATGTGTTCTGCGTCCGGCGACCTGTGCCCTGTGTCTTGC
GTCCTGCGTTTTGAACCAACCGGTAGGTTTATTAGTGTCGTCCACTTTTC
GCAAAAATCGAGGTGGGGAGGTCCGtgttttcgcaaaaatttaagGGGAT
CCGTTTTTTCTCGAAGATTTACGATGGATCGGGGTTTTCATAAGGGTCCA
GGGTCTGAGTTTTCTGAGGCCGGTCCGAGTCCTTGTTAATACAGTACGGC
CTATAAAACAAATCTAagttatatatatataaagTGTTTATTGGCTAGGA
CAGGACAGGAACCTACCTAGGCAAAGGCATAGGCTTTGCAGATATACTGT
AAAGATCACGGCACAAAAATACTATATTATCAAATGTTAGTCAAAAACTA
CGAAAAAAAGCTAGAGACTAGAGCAAAAAAACCTTTGATAGAATTTGGCT
AATTGAATAGCATTTGTGTGTTGtgtgaaaaaagattttcaagagTGCAT
TAttaccaaatagaaaaaaaagaagagaattagatgatgaagatgaaaaa
tataagaagaaaaaaaatcaacttcttgaaGAACTATTTTATAGTCAATC
AGACAAATATTTAAGCTGCattttttggctgaattttttatAACACTTAA
GATTAAAGATTTGCTAGTGTGAATAGGAAGATCATAAGACAATTCTACAA
TTctttttattcttcatttttcagcttcattttctaattttttacaaatc
ttttctATTTCTTAATATCCTTTCAACAACTGTAGAATTGCAAGTTCATT
CTAATTCTGTCAAAACTTTTTCTGTCTTTTTTTGTCTCCATGGCAGATAA
TATTGAGACAGACTCAAATTTGACTCACTGAAATTCTATCAACTTCTGGG
TCACCCCAGTGAATTTTGAAACTCTAAAGAGGCACTGGAACAGGTGTGTC
AGTGGTCTATTAAAACAGGGGTGTATTCTATCAATTCCCAATATTCATCA
GTTTTCGAATCATCATTTCAATCTCTTTATGATTTTGTTCTGCTACATCA
AGTAAATCTTCCATATAATATTTGTACGCTTCTGTATCAAGCTTTAAGTC
GGGAAAATTATTTATGGATGTTGCTGTTTTCATTGCATCAAACTCATCGA
TAATTTCAGCGATTTTCTTGGAATATTCTCCTAGATTTGTCATTTCACTT
TTGACTCTTTGGAGCACGTCATTATCATCTTTAGCATTTTTGACAATGTA
GCCACCTCCTGCTAGGGATGTGACCGCGACTATTGGAAAATAAACATGCG
GCGCGGCAATAGCAGCCAGAACGTTTACAGCAGCACCTATCGCCTTTACC
AAGTATCTTTTATCGTCATTCGAGTCAGTTGCTTTCCTTATATCTTCTCG
TAGTCTATGTACTTCAGTGTATAATCCATTAAACTTTGTCCTCAGCTCTT
CAAACTCCTCGTGAATTTCGATGCTTCGGTCGACAGTGTTACGTAAGAAT
GTCAATATTTCCCTCAACGGAATTTCTTCTCCAGACTGAATTGTTGCTTT
AACCGCATTTCTCAGTGTTCCATAAAATCTTCgtgattttttcaatgtat
ttttcaATTCCTTGATTGCGCCATCGAATTTATTGTAAATTTCCGTTGCT
TTTATTTCTAGTTTGGAGTATTTGCGCTCAGCAAGctgaaaaataacatt
ttctaaTTGTGGTTTTAAGGTTTGCAGCGCTTGAAAACTTTGTTGAGTGT
CTTCTCGGCCTACCTTGTCGTAATTAATGCTATCGTGCAAGATATTCTTA
AAAGAGTGCATGTTGTCTGTCACTCTAACCATTTGAAGTATAAGAGAAAA
TCTTGTATCTGATTCGATATGAACTTTGCAAACTTTGGATAGCGATTCGA
TTTTATCTTGGATGATCTGATACTCTTTGCTGTGGCCTGATACTGTTGAT
ACATACAAAGCAATTCCAAGGATTACAAGGAATCCAAAAATTCCCGTTAA
AATAAATCGAACGGCACCTAATAATCTAATCACTATAGCGATAAGAACCA
CGCTTCCAATAACCGTGGAAAACACGCTTACaataatttttggaaagtaT
GGTTGCAGCAAGACCTCCCAAATGACATCAATAATTTTCGAAACGGATTT
CACCATTACGATTTGAGATTCCTGCTGGCTTGGAATCGTATCTTGTAACA
TTTCTATAGTCATATTAACTGCTTCGGCAAAACCCTTTCTTTGCTCAAAA
TGTTGGTTCATATTTCGGATGGCTGGTGCTATTTGAAcacattgaaattt
ttcaacgcAATCTTTGAACATTTGTGTTTTAcctaatttttgagattttt
cgaCAAGGAATTTTGTTTTTNCTTTGCTCAAAATGTTGGTTCATATTTCG
GATGGCTGGTGCTATTTGAAcacattgaaatttttcaacgcAATCTTTGA
ACATTTGTGTTTTAcctaatttttgagatttttcgacaatgaattttgtt
tttttgtagaACTTGCAGATTGCACTTTTAGCCGATGTCACTTGTTCTTT
AAGTTTATCCATTGTTGCTTCATCAATATCTGGAAGATCATTTTTATCTG
AGATGAACGAATCCAGTTTTTTAGCTGTTTGACATGGCTCCTCAAAAGCT
GTCTTTTCCAAAATCAAAGCATCCTTTACACTGTCGAAAGTGATAACATT
GGCCGCTCCAGGCAGAACAAATGTGACAATTGTTGCCATCATCAATAGAA
GAATGTTCACGATTGagcatttcattattttcttaaaatgataAAACCTA
AA Coding sequence (CDS) from alignment at scaffold_496:519287..522188 >TCONS_00069309 ID=TCONS_00069309|Name=TCONS_00069309|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_496:519287..522188 (Clytia hemisphaerica)
TCAATTCCCAATATTCATCAGTTTTCGAATCATCATTTCAATCTCTTTAT
GATTTTGTTCTGCTACATCAAGTAAATCTTCCATATAATATTTGTACGCT
TCTGTATCAAGCTTTAAGTCGGGAAAATTATTTATGGATGTTGCTGTTTT
CATTGCATCAAACTCATCGATAATTTCAGCGATTTTCTTGGAATATTCTC
CTAGATTTGTCATTTCACTTTTGACTCTTTGGAGCACGTCATTATCATCT
TTAGCATTTTTGACAATGTAGCCACCTCCTGCTAGGGATGTGACCGCGAC
TATTGGAAAATAAACATGCGGCGCGGCAATAGCAGCCAGAACGTTTACAG
CAGCACCTATCGCCTTTACCAAGTATCTTTTATCGTCATTCGAGTCAGTT
GCTTTCCTTATATCTTCTCGTAGTCTATGTACTTCAGTGTATAATCCATT
AAACTTTGTCCTCAGCTCTTCAAACTCCTCGTGAATTTCGATGCTTCGGT
CGACAGTGTTACGTAAGAATGTCAATATTTCCCTCAACGGAATTTCTTCT
CCAGACTGAATTGTTGCTTTAACCGCATTTCTCAGTGTTCCATAAAATCT
TCgtgattttttcaatgtatttttcaATTCCTTGATTGCGCCATCGAATT
TATTGTAAATTTCCGTTGCTTTTATTTCTAGTTTGGAGTATTTGCGCTCA
GCAAGctgaaaaataacattttctaaTTGTGGTTTTAAGGTTTGCAGCGC
TTGAAAACTTTGTTGAGTGTCTTCTCGGCCTACCTTGTCGTAATTAATGC
TATCGTGCAAGATATTCTTAAAAGAGTGCATGTTGTCTGTCACTCTAACC
ATTTGAAGTATAAGAGAAAATCTTGTATCTGATTCGATATGAACTTTGCA
AACTTTGGATAGCGATTCGATTTTATCTTGGATGATCTGATACTCTTTGC
TGTGGCCTGATACTGTTGATACATACAAAGCAATTCCAAGGATTACAAGG
AATCCAAAAATTCCCGTTAAAATAAATCGAACGGCACCTAATAATCTAAT
CACTATAGCGATAAGAACCACGCTTCCAATAACCGTGGAAAACACGCTTA
CaataatttttggaaagtaTGGTTGCAGCAAGACCTCCCAAATGACATCA
ATAATTTTCGAAACGGATTTCACCATTACGATTTGAGATTCCTGCTGGCT
TGGAATCGTATCTTGTAACATTTCTATAGTCATATTAACTGCTTCGGCAA
AACCCTTTCTTTGCTCAAAATGTTGGTTCATATTTCGGATGGCTGGTGCT
ATTTGAAcacattgaaatttttcaacgcAATCTTTGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069309-exon-scaffold_496-1491911889:519287..522188 | TCONS_00069309-exon-scaffold_496-1491911889:519287..522188 | Clytia hemisphaerica | exon |
| TCONS_00069309-exon-scaffold_496-1510915933:519287..522188 | TCONS_00069309-exon-scaffold_496-1510915933:519287..522188 | Clytia hemisphaerica | exon |
| TCONS_00069309-exon-scaffold_496-1575043694:519287..522188 | TCONS_00069309-exon-scaffold_496-1575043694:519287..522188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:519287..522188 . |
Blast
The following BLAST results are available for this feature:
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