TCONS_00069308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069308
Unique NameTCONS_00069308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069308 ID=TCONS_00069308|Name=TCONS_00069308|organism=Clytia hemisphaerica|type=transcript|length=338bp
TACACCACGGTGACTTATCAATTGAAAAATCTGTGTTTTCCCGAAGATTT
ACGAGGGATCCGTGTTTTTGTCCTAGGTCCTGGGTCCTGGTTATACAGTA
CGCCGTTTTATAGCTAGCTGGTGGTGCATggtgttgttttattttattct
tgCATTTATTTTAATAATATGACTTTGAGAGGAATTTGGGCATCATTTTA
AATAACAAATTATTTTCCTCaagaaaaaagtatacaaactaaataaatat
cttgtattttttaaggaaagCTGCACCtataaatttgtattttctaaaga
aaattaCCTCTGgtacaatttattttattgtcgacgaa
Run BLAST on NCBI

transcript from alignment at scaffold_496:518690..519027

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069308 ID=TCONS_00069308|Name=TCONS_00069308|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at scaffold_496:518690..519027 (Clytia hemisphaerica)
ttcgtcgacaataaaataaattgtacCAGAGGtaattttctttagaaaat
acaaatttataGGTGCAGctttccttaaaaaatacaagatatttatttag
tttgtatacttttttcttGAGGAAAATAATTTGTTATTTAAAATGATGCC
CAAATTCCTCTCAAAGTCATATTATTAAAATAAATGcaagaataaaataa
aacaacaccATGCACCACCAGCTAGCTATAAAACGGCGTACTGTATAACC
AGGACCCAGGACCTAGGACAAAAACACGGATCCCTCGTAAATCTTCGGGA
AAACACAGATTTTTCAATTGATAAGTCACCGTGGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043186XLOC_043186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069308-exon-scaffold_496-1491911889:518690..519027TCONS_00069308-exon-scaffold_496-1491911889:518690..519027Clytia hemisphaericaexon
TCONS_00069308-exon-scaffold_496-1510915933:518690..519027TCONS_00069308-exon-scaffold_496-1510915933:518690..519027Clytia hemisphaericaexon
TCONS_00069308-exon-scaffold_496-1575043694:518690..519027TCONS_00069308-exon-scaffold_496-1575043694:518690..519027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:518690..519027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.293073	0	0	0.927012	0.86119	0.557261	0	0.365812	0.3799	0.156165	0.167589	0.412911	0.21161	0	0	0.797711	0	0	0	0.590551	2.37174	0.377105	0.402457	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top