TCONS_00069298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069298
Unique NameTCONS_00069298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069298 ID=TCONS_00069298|Name=TCONS_00069298|organism=Clytia hemisphaerica|type=transcript|length=371bp
TACTAGgatacattgaaaataaattttttataaaatagcaataaagaaat
gaaaattcagAACCAAACTCGAAAATCGTAAAAATTAAGTATATGAAGAG
AGAAAATATAATCTTGTTAAATCTTTGAGACGATCCAATGTTAGTGTAGA
GATGTCGTCATAGGCTAGGTATTTTTGTATTTCGTTCCAAATCGAAATAG
ATTGGTATAAAATTGAGTAATTACCATAAGTCACTGTAGTTACTTCAGAA
TTTTTAAAAGACCAGACTTACAACGAATTACATTATGACGGTCAGTATCA
TTTAGACGtctatattcaagactttgcaGAAGAGGAAGAGGTAGCTtgtg
atttaaaagtttaaacAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_496:337598..337968

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069298 ID=TCONS_00069298|Name=TCONS_00069298|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_496:337598..337968 (Clytia hemisphaerica)
TTACTgtttaaacttttaaatcacaAGCTACCTCTTCCTCTTCtgcaaag
tcttgaatatagaCGTCTAAATGATACTGACCGTCATAATGTAATTCGTT
GTAAGTCTGGTCTTTTAAAAATTCTGAAGTAACTACAGTGACTTATGGTA
ATTACTCAATTTTATACCAATCTATTTCGATTTGGAACGAAATACAAAAA
TACCTAGCCTATGACGACATCTCTACACTAACATTGGATCGTCTCAAAGA
TTTAACAAGATTATATTTTCTCTCTTCATATACTTAATTTTTACGATTTT
CGAGTTTGGTTctgaattttcatttctttattgctattttataaaaaatt
tattttcaatgtatcCTAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043181XLOC_043181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069298-exon-scaffold_496-1491911889:337598..337968TCONS_00069298-exon-scaffold_496-1491911889:337598..337968Clytia hemisphaericaexon
TCONS_00069298-exon-scaffold_496-1510915933:337598..337968TCONS_00069298-exon-scaffold_496-1510915933:337598..337968Clytia hemisphaericaexon
TCONS_00069298-exon-scaffold_496-1575043694:337598..337968TCONS_00069298-exon-scaffold_496-1575043694:337598..337968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:337598..337968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65105	1.77981	3.85308	3.94216	0.822591	1.10647	1.37087	1.7402	0.369091	0.457179	0	1.22027	0.513585	0.874323	0.373064	0.214888	0	1.63826	1.19339	1.38861	1.28996	1.50386	0.854328	1.06687	0.235129	1.04923	1.61875	2.10187	1.52822	1.42424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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