TCONS_00069283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069283
Unique NameTCONS_00069283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069283 ID=TCONS_00069283|Name=TCONS_00069283|organism=Clytia hemisphaerica|type=transcript|length=587bp
aaaaaatcagaaaaaactaatgagccaatctcgagaaaagctggtaacag
acggacggacgagcggacgaacggacggacatgggttaagtTTCGGGCGA
GGGCACGAAATTGTGGTTAGTGGCGGTAGACAAGAAGACCGCCCGCGACT
CTTCCCAGTCCTCTCATGTATGTTGTTGTACCCAGACCCCGCGTGTTCTT
CCTTCATCGACCCACTCAGTATTCGGTCGTGTTttcttttgagtattttt
tgttGGAAGTTTTAAATTTTCGTTTTGCTCGCACACAATCACATTTCATA
ATGCCAAGCAGATCCACATCGTCGAAGAAGACCACAATGCCCGACAACGA
ACGCTCCACCAACGATTTGGGAAAACTCACAGTAACGGAGCTAAAGAACA
AACTAAAACACTTAAAGCTCCCCGAAGAAGGAAGAAAATCAGACCTTCAA
CAACGACTATTCAATCACTATCATCCCCCATCAAACCCTACCACCGCTAA
TATTCAACTGGCCGACATCTTGCACGAATTCCAGACCTTACGCACGGAGG
TCAATTCACTCAAAAACAAGCAAACATCCCAACCATC
Run BLAST on NCBI

protein sequence of TCONS_00069283-protein

>TCONS_00069283-protein ID=TCONS_00069283-protein|Name=TCONS_00069283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MYVVVPRPRVFFLHRPTQYSVVFSFEYFLLEVLNFRFARTQSHFIMPSRS
TSSKKTTMPDNERSTNDLGKLTVTELKNKLKHLKLPEEGRKSDLQQRLFN
HYHPPSNPTTANIQLADILHEFQTLRTEVNSLKNKQTSQP
Run BLAST on NCBI

transcript from alignment at scaffold_496:41658..42244

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069283 ID=TCONS_00069283|Name=TCONS_00069283|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at scaffold_496:41658..42244 (Clytia hemisphaerica)
GATGGTTGGGATGTTTGCTTGTTTTTGAGTGAATTGACCTCCGTGCGTAA
GGTCTGGAATTCGTGCAAGATGTCGGCCAGTTGAATATTAGCGGTGGTAG
GGTTTGATGGGGGATGATAGTGATTGAATAGTCGTTGTTGAAGGTCTGAT
TTTCTTCCTTCTTCGGGGAGCTTTAAGTGTTTTAGTTTGTTCTTTAGCTC
CGTTACTGTGAGTTTTCCCAAATCGTTGGTGGAGCGTTCGTTGTCGGGCA
TTGTGGTCTTCTTCGACGATGTGGATCTGCTTGGCATTATGAAATGTGAT
TGTGTGCGAGCAAAACGAAAATTTAAAACTTCCaacaaaaaatactcaaa
agaaAACACGACCGAATACTGAGTGGGTCGATGAAGGAAGAACACGCGGG
GTCTGGGTACAACAACATACATGAGAGGACTGGGAAGAGTCGCGGGCGGT
CTTCTTGTCTACCGCCACTAACCACAATTTCGTGCCCTCGCCCGAAactt
aacccatgtccgtccgttcgtccgctcgtccgtccgtctgttaccagctt
ttctcgagattggctcattagttttttctgatttttt

Coding sequence (CDS) from alignment at scaffold_496:41658..42244

>TCONS_00069283 ID=TCONS_00069283|Name=TCONS_00069283|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_496:41658..42244 (Clytia hemisphaerica)
TGGTTGGGATGTTTGCTTGTTTTTGAGTGAATTGACCTCCGTGCGTAAGG
TCTGGAATTCGTGCAAGATGTCGGCCAGTTGAATATTAGCGGTGGTAGGG
TTTGATGGGGGATGATAGTGATTGAATAGTCGTTGTTGAAGGTCTGATTT
TCTTCCTTCTTCGGGGAGCTTTAAGTGTTTTAGTTTGTTCTTTAGCTCCG
TTACTGTGAGTTTTCCCAAATCGTTGGTGGAGCGTTCGTTGTCGGGCATT
GTGGTCTTCTTCGACGATGTGGATCTGCTTGGCATTATGAAATGTGATTG
TGTGCGAGCAAAACGAAAATTTAAAACTTCCaacaaaaaatactcaaaag
aaAACACGACCGAATACTGAGTGGGTCGATGAAGGAAGAACACGCGGGGT
CTGGGTACAACAACATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043166XLOC_043166Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069283-proteinTCONS_00069283-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069283-exon-scaffold_496-1491911889:41658..42244TCONS_00069283-exon-scaffold_496-1491911889:41658..42244Clytia hemisphaericaexon
TCONS_00069283-exon-scaffold_496-1510915933:41658..42244TCONS_00069283-exon-scaffold_496-1510915933:41658..42244Clytia hemisphaericaexon
TCONS_00069283-exon-scaffold_496-1575043694:41658..42244TCONS_00069283-exon-scaffold_496-1575043694:41658..42244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:41658..42244 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0957098	0	0.222192	0.221768	0.370247	0.102985	0.602421	0.642876	1.50783	2.32971	3.92234	1.76905	0.77647	2.11066	0.480345	0.254678	0.737091	1.67312	2.08842	1.60799	2.99907	1.81186	0.360421	1.26199	1.58898	0.905228	0.550669	1.31212	0.364543	0.874056
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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