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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069282 ID=TCONS_00069282|Name=TCONS_00069282|organism=Clytia hemisphaerica|type=transcript|length=2895bp
GAGGAGCTCTTCAATACCTACCTACGTGACAAGTTACTTCCCTCCTGTTT
CCATTTCTCATCGTTCGGTCATTTTGCATCTTCATGTCCCTACAAACCAA
ACACCCGTGCAACCATGAAGCAAAATCCTTACGTTTATGTAGCCGACAAA
ACTTTTCGGAATGACAACAACGCTCTTCATCATGGCCCAGCACCGGACAA
AACAACACACCACGATTCCAAAATAACTCCTCTAGCACGCAACTCTGCAA
GCGATATAACCACTATGGATCCTGCAGTTTTCCTGGGTGCAGATACGCCC
ATATGTGCAATAAATGTCTCACCCTCGGCCACCCAGGATCAAGGTGCCAA
GCTTCATCCTCAGCAACCCNTCCCCCATCAAACCCTACCACCGCTAATAT
TCAACTGGCCGACATCTTGCACGAATTCCAGACCTTACGCACGGAGGTCA
ATTCActcaaaaacaagcaaacatcCCAACCATCGCCATCACGCTCATCA
TCTCAATTAGTAGACCCCTGTATCACTTCTGTCGAAAACCCGACACAAAA
ACACGGCACTTTCGTGATAAGTAATGACCCTGTTGCACCGCACCAAAACA
TTAGTCAGCAATTTATTTCAGACGAACAACAAGAACAGCCATTCGACTTC
CAGCAAACACATACACAACAACATCATCAACATCTTGGGCTTCAAGGTAA
GTTTACTCAAAATTACCCATACTCCCCCCCCAGGTACAAAAATTAGGAAG
AGTGAATATATAGACTTTGATGATATCCTGCCCCCTCCACCATCCACCAA
CAACTCCACCGAACTGCTTGGTTTCCAGCTTGATGCCAACAACAACCTCC
TCCTTAAACCGAATCAAACCAAAGCTAAAATACGGGACTACCCCTCTTGG
ATATGTGCCTGGAATCTCTATTATCAAGCGACACTACATTACCAGCCGGA
AATGCACTTTAAGCTTTTCAGTTACTTCAAAATCATGGCAACATTAGCAC
GTAAACACAGGTTCGATTGTGTGTACTTGTACGACAAATCCCAACGTCAA
ACACTAGCCGCACAACATGCTTTACCAACAGACCTTTGCACCGCATCCTG
GACAAATATCAACGAGGAGCTCTTCAATACCTACCTACGTGACAAGTTAC
TTCCCTCCTGTTTCCATTTCTCATCGTTCGGTCATTTTGCATCTTCATGT
CCCTACAAACCAAACACCCGTGCAACCATGAAGCAAAATCCTTACGTTTA
TGTAGCCGACAAAACTTTTCGGAATGACAACAACGCTCTTCATCATGGCC
CAGCACCGGACAAAACAACACACCACGATTCCAAAATAACTCCTCTAGCA
CGCAACTCTGCAAGCGATATAACCACTATGGATCCTGCAATTTTCCTGGG
TGCAGATACGCCCATATGTGCAATAAATGTCTCACCCTCGGCCACCCAGG
ATCAAGGTGCCAAGCTTCATCCTCAGCAACCCGTACATCATTCAGACCTT
CATCCGGCTAATCCCCTACCAGAAGGTATCGTCACACCTGTACATATTAA
AACTTTTCTTTAGCTCTATTAGATTACCCAGATCAAGAAACTTGTAAATA
TTTGATTGATGGCCTCACTTACGGCTTTGATATTGGTTACACTGGTCCAC
ATTCTGCGTGAACaccaaaaaacttaaaatcagcATTAGAACACACAGAC
GCCGTCACAACAGCAGTCTGTAAAGAGTTAAAGCGTAAACACACCTCAGG
ACCATTCCTACAACCTCCAATTCCTAATTTACACTGCCCACCACTCGGTT
CGAGGGAAAAAAAAAGGATGGGACACGACGACTGATCATGGATCTCTCAC
AACCAACAGGTGAATCGATCAACGAGGGCATTGCCAAAGAGGACTTTACA
GTAAAGTATGCAAATTTCGACCAAGCTACAGAACTTGTTTTTAAATCAGG
AAAGAACTGTCTCATGACAAAGATAGACATTCAACACGCATTCCGCCTTC
TGTTCAACCATCTCAGTGGGTATTGCTCGGCATCCATTGGAGAGACATGT
ACTTTGTTGACACTCGTCTACCCTTCGGGCTACGCTCATCGCCAGccatt
ttcaattcttttacgGATGTAGTACACTGGATCCTGCAGAACAAATACAA
ACTCCAGGACTCTACACACTACTCTGACGATTTTCTATTTGTCCACGAAC
CTTCACTACAAANTGCAGTACACTGGATCCTGCAGAACAAATACAAACTC
CAGGACTCTACACACTACTCTGACGATTTTCTATTTGTCCACGAACCTTC
ACTACAAAAGGCTCGACTTGAGGTCCAGACCGCACTGTCCGCTTTCCAAC
ACTTAGGAATTCCCACCGCTGATGACAAGACTGAAGGTCCTGCATGCCAA
TTAACATACCTAGGTATCGAAATCGACTCTTCGAAACAGATCATTCGAAT
ACCCAACGACAAATATTCTGAACTCATGGAAAGTTTACCATTTTGGATTT
TGCGtagaaaatgtacaaaaaagGAACTGCTATCATTCATTGGGAAACTA
TCACTTGTTTGTAAAGTTGTTCGACCAGGTCGCATCTTCCTACGCAGGCT
AATGGACATTTCAATGTCCGTGAAAAAACTCCATTATCATATTACCTTGA
ATAGCGAAGCCCGTGCAGACATTCAATGGTGGATCGACTTTCTCCCAACG
TGGAATAAAACATCTATCATCCCAGATCCTTTCACCATACTATCCAGTGA
CATTAAACTTCATACAGACGCATCCAACATAGGACTTGGTGCAATTTATC
GGAACGCCTGGATACAGGCAGCCTGGCCAATAAAATTCTCCACTAATAAA
CAATATAACATTGACTTTAAGGAACTAATAACAATTGTAATTGCC Run BLAST on NCBI protein sequence of TCONS_00069282-protein >TCONS_00069282-protein ID=TCONS_00069282-protein|Name=TCONS_00069282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MTLLHRTKTLVSNLFQTNNKNSHSTSSKHIHNNIINILGFKVSLLKITHT
PPPGTKIRKSEYIDFDDILPPPPSTNNSTELLGFQLDANNNLLLKPNQTK
AKIRDYPSWICAWNLYYQATLHYQPEMHFKLFSYFKIMATLARKHRFDCV
YLYDKSQRQTLAAQHALPTDLCTASWTNINEELFNTYLRDKLLPSCFHFS
SFGHFASSCPYKPNTRATMKQNPYVYVADKTFRNDNNALHHGPAPDKTTH
HDSKITPLARNSASDITTMDPAIFLGADTPICAINVSPSATQDQGAKLHP
QQPVHHSDLHPANPLPEGIVTPVHIKTFL Run BLAST on NCBI transcript from alignment at scaffold_496:38113..41007 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069282 ID=TCONS_00069282|Name=TCONS_00069282|organism=Clytia hemisphaerica|type=transcript|length=2895bp|location=Sequence derived from alignment at scaffold_496:38113..41007 (Clytia hemisphaerica)
GGCAATTACAATTGTTATTAGTTCCTTAAAGTCAATGTTATATTGTTTAT
TAGTGGAGAATTTTATTGGCCAGGCTGCCTGTATCCAGGCGTTCCGATAA
ATTGCACCAAGTCCTATGTTGGATGCGTCTGTATGAAGTTTAATGTCACT
GGATAGTATGGTGAAAGGATCTGGGATGATAGATGTTTTATTCCACGTTG
GGAGAAAGTCGATCCACCATTGAATGTCTGCACGGGCTTCGCTATTCAAG
GTAATATGATAATGGAGTTTTTTCACGGACATTGAAATGTCCATTAGCCT
GCGTAGGAAGATGCGACCTGGTCGAACAACTTTACAAACAAGTGATAGTT
TCCCAATGAATGATAGCAGTTCcttttttgtacattttctaCGCAAAATC
CAAAATGGTAAACTTTCCATGAGTTCAGAATATTTGTCGTTGGGTATTCG
AATGATCTGTTTCGAAGAGTCGATTTCGATACCTAGGTATGTTAATTGGC
ATGCAGGACCTTCAGTCTTGTCATCAGCGGTGGGAATTCCTAAGTGTTGG
AAAGCGGACAGTGCGGTCTGGACCTCAAGTCGAGCCTTTTGTAGTGAAGG
TTCGTGGACAAATAGAAAATCGTCAGAGTAGTGTGTAGAGTCCTGGAGTT
TGTATTTGTTCTGCAGGATCCAGTGTACTGCANTTTGTAGTGAAGGTTCG
TGGACAAATAGAAAATCGTCAGAGTAGTGTGTAGAGTCCTGGAGTTTGTA
TTTGTTCTGCAGGATCCAGTGTACTACATCcgtaaaagaattgaaaatgg
CTGGCGATGAGCGTAGCCCGAAGGGTAGACGAGTGTCAACAAAGTACATG
TCTCTCCAATGGATGCCGAGCAATACCCACTGAGATGGTTGAACAGAAGG
CGGAATGCGTGTTGAATGTCTATCTTTGTCATGAGACAGTTCTTTCCTGA
TTTAAAAACAAGTTCTGTAGCTTGGTCGAAATTTGCATACTTTACTGTAA
AGTCCTCTTTGGCAATGCCCTCGTTGATCGATTCACCTGTTGGTTGTGAG
AGATCCATGATCAGTCGTCGTGTCCCATCCTTTTTTTTTCCCTCGAACCG
AGTGGTGGGCAGTGTAAATTAGGAATTGGAGGTTGTAGGAATGGTCCTGA
GGTGTGTTTACGCTTTAACTCTTTACAGACTGCTGTTGTGACGGCGTCTG
TGTGTTCTAATgctgattttaagttttttggtGTTCACGCAGAATGTGGA
CCAGTGTAACCAATATCAAAGCCGTAAGTGAGGCCATCAATCAAATATTT
ACAAGTTTCTTGATCTGGGTAATCTAATAGAGCTAAAGAAAAGTTTTAAT
ATGTACAGGTGTGACGATACCTTCTGGTAGGGGATTAGCCGGATGAAGGT
CTGAATGATGTACGGGTTGCTGAGGATGAAGCTTGGCACCTTGATCCTGG
GTGGCCGAGGGTGAGACATTTATTGCACATATGGGCGTATCTGCACCCAG
GAAAATTGCAGGATCCATAGTGGTTATATCGCTTGCAGAGTTGCGTGCTA
GAGGAGTTATTTTGGAATCGTGGTGTGTTGTTTTGTCCGGTGCTGGGCCA
TGATGAAGAGCGTTGTTGTCATTCCGAAAAGTTTTGTCGGCTACATAAAC
GTAAGGATTTTGCTTCATGGTTGCACGGGTGTTTGGTTTGTAGGGACATG
AAGATGCAAAATGACCGAACGATGAGAAATGGAAACAGGAGGGAAGTAAC
TTGTCACGTAGGTAGGTATTGAAGAGCTCCTCGTTGATATTTGTCCAGGA
TGCGGTGCAAAGGTCTGTTGGTAAAGCATGTTGTGCGGCTAGTGTTTGAC
GTTGGGATTTGTCGTACAAGTACACACAATCGAACCTGTGTTTACGTGCT
AATGTTGCCATGATTTTGAAGTAACTGAAAAGCTTAAAGTGCATTTCCGG
CTGGTAATGTAGTGTCGCTTGATAATAGAGATTCCAGGCACATATCCAAG
AGGGGTAGTCCCGTATTTTAGCTTTGGTTTGATTCGGTTTAAGGAGGAGG
TTGTTGTTGGCATCAAGCTGGAAACCAAGCAGTTCGGTGGAGTTGTTGGT
GGATGGTGGAGGGGGCAGGATATCATCAAAGTCTATATATTCACTCTTCC
TAATTTTTGTACCTGGGGGGGGAGTATGGGTAATTTTGAGTAAACTTACC
TTGAAGCCCAAGATGTTGATGATGTTGTTGTGTATGTGTTTGCTGGAAGT
CGAATGGCTGTTCTTGTTGTTCGTCTGAAATAAATTGCTGACTAATGTTT
TGGTGCGGTGCAACAGGGTCATTACTTATCACGAAAGTGCCGTGTTTTTG
TGTCGGGTTTTCGACAGAAGTGATACAGGGGTCTACTAATTGAGATGATG
AGCGTGATGGCGATGGTTGGgatgtttgcttgtttttgagTGAATTGACC
TCCGTGCGTAAGGTCTGGAATTCGTGCAAGATGTCGGCCAGTTGAATATT
AGCGGTGGTAGGGTTTGATGGGGGANGGGTTGCTGAGGATGAAGCTTGGC
ACCTTGATCCTGGGTGGCCGAGGGTGAGACATTTATTGCACATATGGGCG
TATCTGCACCCAGGAAAACTGCAGGATCCATAGTGGTTATATCGCTTGCA
GAGTTGCGTGCTAGAGGAGTTATTTTGGAATCGTGGTGTGTTGTTTTGTC
CGGTGCTGGGCCATGATGAAGAGCGTTGTTGTCATTCCGAAAAGTTTTGT
CGGCTACATAAACGTAAGGATTTTGCTTCATGGTTGCACGGGTGTTTGGT
TTGTAGGGACATGAAGATGCAAAATGACCGAACGATGAGAAATGGAAACA
GGAGGGAAGTAACTTGTCACGTAGGTAGGTATTGAAGAGCTCCTC Coding sequence (CDS) from alignment at scaffold_496:38113..41007 >TCONS_00069282 ID=TCONS_00069282|Name=TCONS_00069282|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_496:38113..41007 (Clytia hemisphaerica)
CTAAAGAAAAGTTTTAATATGTACAGGTGTGACGATACCTTCTGGTAGGG
GATTAGCCGGATGAAGGTCTGAATGATGTACGGGTTGCTGAGGATGAAGC
TTGGCACCTTGATCCTGGGTGGCCGAGGGTGAGACATTTATTGCACATAT
GGGCGTATCTGCACCCAGGAAAATTGCAGGATCCATAGTGGTTATATCGC
TTGCAGAGTTGCGTGCTAGAGGAGTTATTTTGGAATCGTGGTGTGTTGTT
TTGTCCGGTGCTGGGCCATGATGAAGAGCGTTGTTGTCATTCCGAAAAGT
TTTGTCGGCTACATAAACGTAAGGATTTTGCTTCATGGTTGCACGGGTGT
TTGGTTTGTAGGGACATGAAGATGCAAAATGACCGAACGATGAGAAATGG
AAACAGGAGGGAAGTAACTTGTCACGTAGGTAGGTATTGAAGAGCTCCTC
GTTGATATTTGTCCAGGATGCGGTGCAAAGGTCTGTTGGTAAAGCATGTT
GTGCGGCTAGTGTTTGACGTTGGGATTTGTCGTACAAGTACACACAATCG
AACCTGTGTTTACGTGCTAATGTTGCCATGATTTTGAAGTAACTGAAAAG
CTTAAAGTGCATTTCCGGCTGGTAATGTAGTGTCGCTTGATAATAGAGAT
TCCAGGCACATATCCAAGAGGGGTAGTCCCGTATTTTAGCTTTGGTTTGA
TTCGGTTTAAGGAGGAGGTTGTTGTTGGCATCAAGCTGGAAACCAAGCAG
TTCGGTGGAGTTGTTGGTGGATGGTGGAGGGGGCAGGATATCATCAAAGT
CTATATATTCACTCTTCCTAATTTTTGTACCTGGGGGGGGAGTATGGGTA
ATTTTGAGTAAACTTACCTTGAAGCCCAAGATGTTGATGATGTTGTTGTG
TATGTGTTTGCTGGAAGTCGAATGGCTGTTCTTGTTGTTCGTCTGAAATA
AATTGCTGACTAATGTTTTGGTGCGGTGCAACAGGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069282-exon-scaffold_496-1491911889:38113..41007 | TCONS_00069282-exon-scaffold_496-1491911889:38113..41007 | Clytia hemisphaerica | exon |
| TCONS_00069282-exon-scaffold_496-1510915933:38113..41007 | TCONS_00069282-exon-scaffold_496-1510915933:38113..41007 | Clytia hemisphaerica | exon |
| TCONS_00069282-exon-scaffold_496-1575043694:38113..41007 | TCONS_00069282-exon-scaffold_496-1575043694:38113..41007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:38113..41007 . |
Blast
The following BLAST results are available for this feature:
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