TCONS_00069277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069277
Unique NameTCONS_00069277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069277 ID=TCONS_00069277|Name=TCONS_00069277|organism=Clytia hemisphaerica|type=transcript|length=272bp
TGTATGATGGACAAATCATAAGGCACTTCTTGGTCACCTTCATCAGGTTG
TCTTTCATTGAGAGGAGGAGGTTGAGCATTTCGTTCATTCTCTTCTTCGC
TGTTCGGTAAAATATCCTCATCGTTCATTAAATTGTTGAATAAACGATCT
TCCCTCTCTTTTTGGTTCGTGTTGACTAGAGGTTTAGTTTGTTGTCTTTT
TCCTGTGGCTTcctttttggtaattttcttaCTTCTTTTAATGCTCTTTG
CAATATGCAGATTGGTTTTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_496:679928..682184-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069277 ID=TCONS_00069277|Name=TCONS_00069277|organism=Clytia hemisphaerica|type=transcript|length=2257bp|location=Sequence derived from alignment at scaffold_496:679928..682184- (Clytia hemisphaerica)
TGTATGATGGACAAATCATAAGGCACTTCTTGGTCACCTTCATCAGGTTG
TCTTTCATTGAGGGGAGGAGGTTGAGCATTTCGTTCATTCTCTTCTTCAC
TGTTCGGTAAAATATCCTCATCGTTCATCAAATTGTTAAGTAAACGATCT
TCCCTCTCTTTTTGTTTTGTGTTGACTAGAGCCTTTGTATGCTCTCTTTT
TCCTGTAGCTTTCCTTCTGGCGAATTTCTTACTTCGCTTGTTGGCTTTTG
ATCTTTGCAAAGTGGCTTTCTTTGCGATGGTAACGCTTTGAGCTGAAAAG
AAAACACCATCTTTGTCTAGTACAGGGTAATTAAAAAAAACTGCACCCCT
AGAATTTTTGACGTAACTTTTTTTCTGTCTATCTTATCGCCATGAAATCT
TCAACACTCACACCCTAGTAGATTTGAAGCCTGCATGTGGGATTTGAGGT
TTATAGATATTTATTAAAATATGATAGTTTGAAGAAAAAGTACAGTTTCC
ATAAATGAACAAACCCTTTCTTTTCTGACGTCAAAAAAGAAAATACTATT
CTTGTGATCGGAGCATAATACAGCGTTTATAGTCCCCAGGGATGCCCTCA
AAGAACGCACAATGACAGAGAGGTACTGTAAGCCTATATATTTAAGCAAG
TCCAGGAAAAATCAAGAAGTTAAAGAGGAATGGAATGAATTCCTTTATAG
GAATTTAATGAACTCCTTTATATAATCGTCGTCAATGCAATCGATTGGTT
TGAAGAGAGGATTGACGTGACATCGTGAAAAAATGAATCTCAATGCATTG
CAGATGTTAGAAGAGGATACGTGTGAGAAAAATCGTCAAAACGGACCAAA
CCTTCTTTAGCTTTTTGATTTGATGTTATGGCTCACTTTCATTCATTTTC
CATTCATTTCCATTCACTTATTGGTTTAAAAAACATGATCAACGGTATTT
CACATTCAACTGAAAAACTTCTCCATTTTTGACGTCAAAATAAAATTCCC
TGTTCACTTGTGAAACTGGTACTTTATCTTCAAACTTCTTATTCTTCATA
AGATATGTAAGCTATAGTATTCAAATTTCACACATAGACTTTAAATTTAC
TAAGGAAAAAGGGTTTGAGATTTCAAAGCTATAGGATAAATAAAAATTAA
GTTACGTTAAAAAATCTAGGGGTGCGGTTTTTTTTAATCACCCTGTAGAA
AGGCTTTTCTAAAATTGACTTAAATAATTTCTTATATCTTTAACCAGTTG
GGGAAGGCGTATTATAGCAGACAAGGTGATTCAATAAATACAAAGCCAAA
CAATACAATTCTCATAATGCAGACAACGCATTTTTGCAAAGGGAGTGTGT
CGAATCCTCTTAACAAAGTACACAATAACAAAGCTTGACAGTCTTACTCT
GTTCATTTCTCCCCTGTGCTTCATTTTGAATGATGGAAAAATCATAAGGC
ACTTCTTGGTCACCTTCATCAGGTTGTCTTTCATTGAGAGGAGGAGGTTG
AGTATTTCGTTCATTCTCTTCTTCACTGTTCGGTAAAATATCCTCATCGT
TCATCAAATTGTTAAGTAAACGATCTTCCCTCTCTTTTTGGTTCGTGTTG
ACTAAAGCCTTTGTCTGCTCTCTTTTTCCTGCAGCTTTCTTTCTGGCGAA
TTTCTTACTTCGCTTGTTGCCTTTTGATCTTTGCAAAGTGGCTTTCTTTG
CGATGGGAACGTTTTGAGCTGAAAAGAAAACACCATCTTTGTCTAGTAGA
AAGGCTTTTCTAAAATTGACTTAGGGTAATTTCTTATATCTTTAACCAGT
TGGAGAAGGCGTATTATAGCAGACAAGGTGATTCAATAAATACAAAGCCA
AACAATGCAATTCTCATAATGCAGACAACGCATTTTTGCAAAGGGAGACG
GTATAATCCGCCAAAACCTAAAAAAAGCAAACAATTGCAAAGCTTGACAG
TCTTACTCTGTCGATTTCTCCCCTGTGCATTATTTTGTATGATGGACAGA
TCATAAGGCACTTCTTGCTCACCTTCATCAGGTTGCCTTTCATTAAGAGG
AGGAGGTTGAGCATTTCGTTCATTCTCTTCTTCGCTGTTCGGTAAAATAT
CCTCATCGTTCATTAAATTGTTGAATAAACGATCTTCCCTCTCTTTTTGG
TTCGTGTTGACTAGAGGTTTAGTTTGTTGTCTTTTTCCTGTGGCTTCCTT
TTTGGTAATTTTCTTACTTCTTTTAATGCTCTTTGCAATATGCAGATTGG
TTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043160XLOC_043160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069277-exon-scaffold_496-1575043694:682139..682184TCONS_00069277-exon-scaffold_496-1575043694:682139..682184Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1575043694:680689..680712TCONS_00069277-exon-scaffold_496-1575043694:680689..680712Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1575043694:679928..680129TCONS_00069277-exon-scaffold_496-1575043694:679928..680129Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1510915933:682139..682184TCONS_00069277-exon-scaffold_496-1510915933:682139..682184Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1510915933:680689..680712TCONS_00069277-exon-scaffold_496-1510915933:680689..680712Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1510915933:679928..680129TCONS_00069277-exon-scaffold_496-1510915933:679928..680129Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1491911889:682139..682184TCONS_00069277-exon-scaffold_496-1491911889:682139..682184Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1491911889:680689..680712TCONS_00069277-exon-scaffold_496-1491911889:680689..680712Clytia hemisphaericaexon
TCONS_00069277-exon-scaffold_496-1491911889:679928..680129TCONS_00069277-exon-scaffold_496-1491911889:679928..680129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:679928..682184 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.850451	3.90161	0.231116	0.719065	1.51239	0	0.0968077	0.111828	0	0	0	1.13836	2.32096	0.838639	0.410365	0	0	0.565993	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top