TCONS_00069270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069270
Unique NameTCONS_00069270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069270 ID=TCONS_00069270|Name=TCONS_00069270|organism=Clytia hemisphaerica|type=transcript|length=797bp
NNACACACTTGAACTTGCACTGCTTGAGGTAAATGCTGAGCTCGATGAAG
GTGTAGATACCGAGGAACTGACATATGGGCTTGATGTGCTCACAACTTGA
GATTGTGTGCTTGCATATGTAGATTCAGTGTAAGTTGTTTGGCTTGTGCT
TGAACTTACTTGGCTTGATGAGCTAGCAATCGATGTCGATGGAGCTGGCT
TGCTTgtagatggtgatggtgattggacagaagtagtgaccggtttgtat
gtgctgacacttgttgatgttgacacacttgaacttGCACTGCTTGAGGT
AAATACTGAGCTCGAAGATGGTGTAGATACAGAAGTACTAACGTATGGAG
TACTGCTTGTAGCTTGGCTTGATGAGCTTGCAATTGATGTcgatggagct
ggtttgcttgtagatggtgatggtgattggacagaagtagtgactggttt
gtatgtgctgacacttgttgatgttgataCACTTGAACTTACACTGCTCG
AGGTAAATACTGAGCTCGAAGATGGTGTAGATACAGAAGAACTAACGTAT
GGAGTACTGCTCGTAGCTTGGCTTGATGAGCTTGCAATTGATGTcgatgg
agctggtttgcttgtagatggtgatggtgattggACGGAAGTAGTGACTG
GTTNTGCTTgtagatggtgatggtgattggacagaagtagtgactggttt
gtatgtgctgacacttgttgatgtGGACACACTCGAGGTCGATGACGAGG
CAAATGAAGTACTTGACGATGGAATTGGGATAGTAAATGGAggctat
Run BLAST on NCBI

transcript from alignment at scaffold_496:634734..635734-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069270 ID=TCONS_00069270|Name=TCONS_00069270|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at scaffold_496:634734..635734- (Clytia hemisphaerica)
NNACACACTTGAACTTGCACTGCTTGAGGTAAATGCTGAGCTCGATGAAG
GTGTAGATACCGAGGAACTGACATATGGGCTTGATGTGCTCACAACTTGA
GATTGTGTGCTTGCATATGTAGATTCAGTGTAAGTTGTTTGGCTTGTGCT
TGAACTTACTTGGCTTGATGAGCTAGCAATCGATGTCGATGGAGCTGGCT
TGCTTGTAGATGGTGATGGTGATTGGACAGAAGTAGTGACCGGTTTGTAT
GTGCTGACACTTGTTGATGTTGACACACTTGAACTTGCACTGCTTGAGGT
AAATGCTGAGCTCGATGAAGGTGTAGATACAGAAGTACTAACGTATGGAG
TACTGCTTGTAGCTTGGCTTGATGAGCTTGCAATTGATGTCGATGGAGCT
GGTTTGCTTGTAGATGGTGACGGTGATTGGACAGAAGTAGTGACTGGTTT
GTATGTGCTGACACTTGTTGATGTTGATACACTTGAACTTGCACTGCTCG
AGGTAAATACTGAGCTCGAAGATGGTGTAGATACAGAAGTACTAACGTAT
GGAGTACTGCTTGTAGCTTGGCTTGATGAGCTTGCAATTGATGTCGATGG
AGCTGGTTTGCTTGTAGATGGTGATGGTGATTGGACAGAAGTAGTGACTG
GTTTGTATGTGCTGACACTTGTTGATGTTGATACACTTGAACTTACACTG
CTCGAGGTAAATACTGAGCTCGAAGATGGTGTAGATACAGAAGAACTAAC
GTATGGAGTACTGCTCGTAGCTTGGCTTGATGAGCTTGCAATTGATGTCG
ATGGAGCTGGTTTGCTTGTAGATGGTGATGGTGATTGGACGGAAGTAGTG
ACTGGTTNTGCTTGTAGATGGTGATGGTGATTGGACAGAAGTAGTGACTG
GTTTGTATGTGCTGACACTTGTTGATGTGGACACACTCGAGGTCGATGAC
GAGGCAAATGAAGTACTTGACGATGGAATTGGGATAGTAAATGGAGGCTA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043156XLOC_043156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069270-exon-scaffold_496-1575043694:635437..635734TCONS_00069270-exon-scaffold_496-1575043694:635437..635734Clytia hemisphaericaexon
TCONS_00069270-exon-scaffold_496-1575043694:634734..635232TCONS_00069270-exon-scaffold_496-1575043694:634734..635232Clytia hemisphaericaexon
TCONS_00069270-exon-scaffold_496-1510915933:635437..635734TCONS_00069270-exon-scaffold_496-1510915933:635437..635734Clytia hemisphaericaexon
TCONS_00069270-exon-scaffold_496-1510915933:634734..635232TCONS_00069270-exon-scaffold_496-1510915933:634734..635232Clytia hemisphaericaexon
TCONS_00069270-exon-scaffold_496-1491911889:635437..635734TCONS_00069270-exon-scaffold_496-1491911889:635437..635734Clytia hemisphaericaexon
TCONS_00069270-exon-scaffold_496-1491911889:634734..635232TCONS_00069270-exon-scaffold_496-1491911889:634734..635232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:634734..635734 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.984048	0.603994	0.802379	0	29.6933	30.4669	186.009	285.114	214.691	268.87	395.634	387.84	21.6114	19.3068	4.12803	5.41104	20.7257	27.5368	90.5897	131.284	73.2388	104.836	22.4845	42.6781	76.6627	83.1131	7.18619	7.59815	5.46778	3.64028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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