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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069264 ID=TCONS_00069264|Name=TCONS_00069264|organism=Clytia hemisphaerica|type=transcript|length=1502bp
GAAAGCTACAAAACGTTGAAGAATCAAATGAAAATGTTAGATCACTTGTT
GAAGATCAGCTTCTTACTTTTGGTGCGTTTTCCGTACCCTTCATCCTGTG
AGGTGTACAACTGTTACAAATGTACGAGCGTGGTAGAAGAATGTGACAAT
ATGGCAGATTGCATTACGTCATGCACACGTCAGCAAGAAATTGAACCCTG
TCCATACCTCCATTTTGAGTGTTTCAATGTCAGCTTTTCATATATTGAAG
AGAAAACGAAGAAAAAGAAGTTTTGGTTTGAAAGACATTGTGCTCCCAAT
TTTGAGAATGATTGCGGCGGTGAATTCGCCTGTGCTTTAGCTGACCATGT
CAACTCAACGGATTGCAAAAAACAATGTTGCGACGATAAAGACTTATGCA
ATACAAACATTCGATTGCCATCCATTGCTGCTTTAAGTTCAAGCTCTAAT
CTCCATTCATCAAGAGGTGGCATCGTGGTTACGCTTCTGTTGGTTGCAAT
TTCCTTTGTCATGTTCTATGCtgatagagatgtcacatgataCATAGAGA
AAGAGATTCACGCGGTGGTTCATTGGATATGAGAAAAGGAAATTAACCTG
ATTATCTCGATTCTCGAGCACGTGACCATTGCATTTAAGTCGTTAAAAAA
ATGGTTTCACAGCCTAGCACACGCACAACCTATTGTTGACTCTCGTCAAA
CGTTCTATGGTTGCCATGGACGTCGTGAACTACTTTCCCGTCTCGTGAAT
ATCTACTTACGGCGATTTCACGTCTCATTCAAAGGACGCTTTCTTATAAT
GTGGTTGTTGGACCGAACAACTCACTTATCACTTAGTTAACTGGCAGCTG
TTTTATTTGCCAGGATCAGATGAAATCTTCCTGGAAGTCTTGCAGTGATT
CACACATTGTTTGTTGAATAGTGGAATAGCACACCGTATTTCGAGATAAA
GCATGGACGCACTGTCATATATGTTTTATAACTCTATTTGGAATTTGACT
ACTATTTTCATAACGTAGTTATGTCAACcatggttttgaaaaaaatattc
attgcAAAAACACCCCTNACTACTATTTTCATAACGTAATTAAGTCAACC
ATGGTTTTGTAAAAATTCATTGCCAAAGCACCCCTATTATCAATATCTCC
AAAAAGTGAGTCCCAAACTATTGAAACAGGGGTGTGCAAAAGGAGTCAGT
ATTGTATTACTTACTGTTTTCAcaattgaaatcttttttttttacatttc
gttgattttttattcaaatcaaCTAAATTTTAATGTCACTTCTGAACCAT
AAAGGTTCGTAAAGAATTTATATCAAAACTGTATAATGATGTCTCataca
tatttatttttgttgatttttttactGTCTGTAAATAAGTTCGAATAATT
TTACGTTTCTATTTTGTGTTGTTCTGTTGTAATATAAGAATATTTTGTAC
AATACGATTTATTTGCGGTTTTTGTTTCAGAACCATTTTGTTTggacaca
cc Run BLAST on NCBI transcript from alignment at scaffold_496:531274..536791- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069264 ID=TCONS_00069264|Name=TCONS_00069264|organism=Clytia hemisphaerica|type=transcript|length=5518bp|location=Sequence derived from alignment at scaffold_496:531274..536791- (Clytia hemisphaerica)
GAAAGCTACAAAACGTTGAAGAGTAAGATTTTTAAGAATATTTTAGAATG
TAGATTAATTTTCATAATTCATCTTATTATTATTAATATAAGTTTTTAAC
TAATTCTGATTGATTTTGAGGGTTAGTAACAGAGCTTTGAATCTTTTAAA
AATATATATTTTTGATGAATATGATGTTTTTAACGAATTATTTATTAGCT
ACGGTTTGTATTCGATGGTTTGTATTCAATCTAAAACTGTGTTTTTTTAT
CAATCATATCTTACATTTTTTTGAGTCAAGGGAACTATTTTTTACACTTG
ATCATCTTGTAGATAATTCTTGCATACTTAGTTCACACTTGTAAGGATTA
AGTTAAGAGAGGTTTTGTGGAGACATTCTTGACAGAAAAATCTTGATTAC
TTCTTATTTGTTTATTTACATACTCATCTGAAGGTGCTTTAGCTTTTTTA
TCACATAATCCTCACAGCTTTGAAAAATATTAAACTGCAGAGCAACTTTG
AGTAAATACAAATATGTCGTAATCATCATAATACATGTCTCAGCACTTTT
TATATATTCTTGGTTTTTTTTATGAAAAACTTATCGTTTTATATACTTTT
TTTAGATCAAATGAAAATGTTAGATCACTTGTTGAAGATCAGCTTCTTAC
TTTTGGTGCGTTTTCCGTACCCTTCATCCTGTGGTAAGTGATATTGTTTG
ATATTTCAAATTTTTCAATCTTCCTGCCAGCTACATGTTTTTGTTGCATA
TACATATTATGACAATTCTTATCGACAAGTCAAGTCCCTTTGTTGTACGA
GTGCGCCCGCTGGTTTGCGTGATACTGTAGCGCAAGTCTGATATCCCGAT
GGCGGTTTTGCGGCCGCCCACGCTAAAGCTCTGAAGGGATCGGGCCAATT
TTAAAATTTTCCCGATCTTCAGAGCTTCAGCGTGTCGGATGAAAATTTCT
GCATCTGGGTGCCAGATAAGCGTAATTGGGGGCTTCTTTCTTACGTTATG
GCGCCACTTTGGCTATTTTCCACTATTTTGCGTGGCTTAAAAAGGGGTAC
CATTTGAGGAATACTTAAATATGGTGGCTGCAATCCTTGTATAGTTGAAT
CTACAGAATTCGAACCTCTGTTACTCGGATGTCTCCTTAATTCGAATAAG
TTTACTGGCCCCTTCACTTAACAATGCCGTATAAACCAGTCACCAATTTC
AAGGGTCGCAGACAAAGTCTGAGAATATTTAGGGTCTTCAACTCTAAATT
GGTTTCACTTCAAAATTCAAGTTATATCATTTTAATTCATCAGAGGTGTA
CAACTGTTACAAATGTACGAGCGTGGTAGAAGAATGTGACAATATGGCAG
ATTGCATTACGTCATGCACACGTCAGCAAGAAATTGAACCCTGTCCATAC
CTCCATTTTGAGTGTTTCAATGTCAGCTTTTCATATATTGAAGAGAAAAC
GAAGAAAAAGAAGTTTTGGTTTGAAAGACATTGTGCTCCCAATTTTGAGA
ATGATTGCGGCGGTGAATTCGCCTGTGCTTTAGCTGACCATGTCAACTCA
ACGGATTGCAAAGTAAGTTTCTCGTTGTGAATTTAGTATACTTTAGGCGT
ACAATACAAACTTTTGCGAGCAGTAACTTTTTAGCCTTTTTCGCGAAAGT
AAAAAACGTCTAAATTCTTTACAGAACAATTCGCGAAAAATTCTCAAAGA
AATTGGAAATCTATAAAACCTCAAGTCATTATAAATATCAAATTCTCGGC
ATATTTTTACTTTTTAATGCCTTTTTAAAGTCGAAGAGCAACCGTCTTTA
TCGGATTCAAGGAATATTTTTCAATTTAAAGGCAAAGCGAAGCGAAAGCT
TCTGCTCGCGAAAGTTCGTACGCCTAAAATTAACTCTCATTTCTGAGGTA
ACTTACGTAACGCTTTTTATCCGAATCCTTTGCGCTGATTTTATCGGGAA
AAACCCCCCCCCCCCATAGTCAATATGATTTTTCGAAATTATATCAAATT
TATCAATTAGTATTCAAAAAACGACTTGAATGTCGAGCAAACTTTTGGAA
AGATGGCCGTTCTAATAGTAAATTACCGCTAGTAATTTGATTAAAAAGTA
TTTTTGTATTTTTTTTGCTACATACGACCAGTCATTTTCGATAGATCCAT
GGACGGTTTTTATTGTATAGTAACTCTCGATTTGGAAGGTACGTGTTAAA
AACGTAAATTCAATTTTAGTATTAGGAAATGATTCTTTTTAAAAATAACG
AACGAGTTTAACGTAATTAGAATCTAGAACATTACGTGGAATTAGAAAAG
TCGTTTGTTTTTAATATTTTTTTAATATTTTTTAATATAATTTGACCCCT
CATGACCTAACACGAACATGGAATTAGATTTGAAGGAAACGATTGGTTTT
GAAATGAAATCTTTTTATCGTTTGTGCCTCGTTTTCATGACAAATAACTT
TGGCTTCTAGGGTAACATTTTGAGTAACTAGCCTACGCTTAACTTTTAAA
AATTCTAATATATGCCGCCCTGTAAATAATCAAAATATTGGAAAACACAT
CTTTTACTTTAAGTATGAATGAATATATTCATGCTTTATAATATTAGAAA
TTCCCGGTGAATCATCCAAAACAGTCCCTGAAAGATGGAATCTTGAAAGA
AGCCATCACGAGATCGTCTTCTATTACTCATAACCATTCCTGCGTCTGTA
GAAAAAATATCACGAAAATTCCGTCAAGCATACAAAATTCACCCTCGTCC
AAAGTCTCGCAATGATTTTAGACTTCTTTTTTGGGNAATGTCAGCTTTTC
ATATATTGAAGAGAAAACGAAGAAAAAGAAGTTTTGGTTTGAAAGACATT
GTGCTCCCAATTTTGAGAATGATTGCGGCGGTGAATTCGCCTGTGCTTTA
GCTGACCATGTCAACTCAACGGATTGCAAAGTAAGTTTCTCGTTGTGAAT
TTAGTATACTTTAGGCGTACAATACAAACTTTTGCGAGCAGTAACTTTTT
AGCCTTTTTCGCGAAAGTAAAAAACGTCTAAATTCTTTACAGAACAATTC
GCGAAAAATTCTCAAAGAAATTGGAAATCTATAAAACCTCAAGTCATTAT
AAATATCAAATTCTCGGCATATTTTTACTTTTTAATGCCTTTTTAAAGTC
GAAGAGCAACCGTCTTTATCGGATTCAAGGAATATTTTTCAATTTAAAGG
CAAAGCGAAGCGAAAGCTTCTGCTCGCGAAAGTTCGTACGCCTAAAATTA
ACTCTCATTTCTGAGGTAACTTACGTAACGCTTTTTATCCGAATCCTTTG
CGCTGATTTTATCGGGAAAAACCCCCCCCCCCCATAGTCAATATGATTTT
TCGAAATTATATCAAATTTATCAATTAGTATTCAAAAAACGACTTGAATG
TCGAGCAAACTTTTGGAAAGATGGCCGTTCTAATAGTAAATTACCGCTAG
TAATTTGATTAAAAAGTATTTTTGTATTTTTTTTGCTACATACGACCAGT
CATTTTCGATAGATCCATGGACGGTTTTTATTGTATAGTAACTCTCGATT
TGGAAGGTACGTGTTAAAAACGTAAATTCAATTTTAGTATTAGGAAATGA
TTCTTTTTAAAAATAACGAACGAGTTTAACGTAATTAGAATCTAGAACAT
TACGTGGAATTAGAAAAGTCGTTTGTTTTTAATATTTTTTTAATATTTTT
TAATATAATTTGACCCCTCATGACCTAACACGAACATGGAATTAGATTTG
AAGGAAACGATTGGTTTTGAAATGAAATCTTTTTATCGTTTGTGCCTCGT
TTTCATGACAAATAACTTTGGCTTCTAGGGTAACATTTTGAGTTTTGAGT
AACTAGCCTACGCTTAACTTTTGAAAATTCTAATATATGCCGCCCTGTAA
ATATCAAAATATTGGAAAACACATCTTTTACTTTAAGTATGAATATATTC
ATGCTTTATAATATTAGAAATTCCCGATGAATCATCCAAAACAGTCCCTG
AAAGATGGAATCTTGAAAGGAGCCATCACGAGACCGTCTTCTATTACTCA
TAACCATTCCTGCGTCTGTAGAAAAAATATCACGAAAATTCCGTCAAGCA
TACAAAATTCACCCTCGTCCAAAGTCTCGCAATGATTTTAGACTTCTTTT
TTGGGTCAGATAAGTGACTGAATGACTGACTTTTGAGAATTTTTGAAAAT
TGAGAAAGCTGAAAATTGGAATGAAAGGGTTAAATTCTTGTGTTCTGATA
AGTTTTTTTATCAATTTAACTTAAAAAAAGAAAATTCAACAAAATGATCC
ACAGGGGTGGACTCGAACCTGTTAGCTTCTCTATCCAAAGTTAAAATCCT
TGCCATTTCATTAAATTTTCATATTTTTTTAACAGAAACAATGTTGCGAC
GATAAAGACTTATGCAATACAAACATTCGATTGCCATCCATTGCTGCTTT
AAGTTCAAGCTCTAATCTCCATTCATCAAGAGGTGGCATCGTGGTTACGC
TTCTGTTGGTTGCAATTTCCTTTGTCATGTTCTATGCTGATAGAGATGTC
ACATGATACATAGAGAAAGAGATTCACGCGGTGGTTCATTGGATATGAGA
AAAGGAAATTAACCTGATTATCTCGATTCTCGAGCACGTGACCATTGCAT
TTAAGTCGTTAAAAAAATGGTTTCACAGCCTAGCACACGCACAACCTATT
GTTGACTCTCGTCAAACGTTCTATGGTTGCCATGGACGTCGTGAACTACT
TTCCCGTCTCGTGAATATCTACTTACGGCGATTTCACGTCTCATTCAAAG
GACGCTTTCTTATAATGTGGTTGTTGGACCGAACAACTCACTTATCACTT
AGTTAACTGGCAGCTGTTTTATTTGCCAGGATCAGATGAAATCTTCCTGG
AAGTCTTGCAGTGATTCACACATTGTTTGTTGAATAGTGGAATAGCACAC
CGTATTTCGAGATAAAGCATGGACGCACTGTCATATATGTTTTATAACTC
TATTTGGAATTTGACTACTATTTTCATAACGTAGTTATGTCAACCATGGT
TTTGAAAAAAATATTCATTGCAAAAACACCCCTNACTACTATTTTCATAA
CGTAATTAAGTCAACCATGGTTTTGTAAAAATTCATTGCCAAAGCACCCC
TATTATCAATATCTCCAAAAAGTGAGTCCCAAACTATTGAAACAGGGGTG
TGCAAAAGGAGTCAGTATTGTATTACTTACTGTTTTCACAATTGAAATCT
TTTTTTTTTACATTTCGTTGATTTTTTATTCAAATCAACTAAATTTTAAT
GTCACTTCTGAACCATAAAGGTTCGTAAAGAATTTATATCAAAACTGTAT
AATGATGTCTCATACATATTTATTTTTGTTGATTTTTTTACTGTCTGTAA
ATAAGTTCGAATAATTTTACGTTTCTATTTTGTGTTGTTCTGTTGTAATA
TAAGAATATTTTGTACAATACGATTTATTTGCGGTTTTTGTTTCAGAACC
ATTTTGTTTGGACACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069264-exon-scaffold_496-1575043694:536770..536791 | TCONS_00069264-exon-scaffold_496-1575043694:536770..536791 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1575043694:536109..536186 | TCONS_00069264-exon-scaffold_496-1575043694:536109..536186 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1575043694:535230..535498 | TCONS_00069264-exon-scaffold_496-1575043694:535230..535498 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1575043694:531274..532406 | TCONS_00069264-exon-scaffold_496-1575043694:531274..532406 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1510915933:536770..536791 | TCONS_00069264-exon-scaffold_496-1510915933:536770..536791 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1510915933:536109..536186 | TCONS_00069264-exon-scaffold_496-1510915933:536109..536186 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1510915933:535230..535498 | TCONS_00069264-exon-scaffold_496-1510915933:535230..535498 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1510915933:531274..532406 | TCONS_00069264-exon-scaffold_496-1510915933:531274..532406 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1491911889:536770..536791 | TCONS_00069264-exon-scaffold_496-1491911889:536770..536791 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1491911889:536109..536186 | TCONS_00069264-exon-scaffold_496-1491911889:536109..536186 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1491911889:535230..535498 | TCONS_00069264-exon-scaffold_496-1491911889:535230..535498 | Clytia hemisphaerica | exon |
| TCONS_00069264-exon-scaffold_496-1491911889:531274..532406 | TCONS_00069264-exon-scaffold_496-1491911889:531274..532406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:531274..536791 - |
Blast
The following BLAST results are available for this feature:
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