TCONS_00069223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069223
Unique NameTCONS_00069223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069223 ID=TCONS_00069223|Name=TCONS_00069223|organism=Clytia hemisphaerica|type=transcript|length=1501bp
TTCTTAATGAGAAGTTGTTAAATCAATCTAAGACACaagtaaatttgaaa
acgagttTCAATTCTTACCAAGACGATTTTCTTCAATAGAACTGGAACTT
CAAATGGACAACCAGAGGCCAATTGGAACAATGATTCGACATGAAGCAGA
AAATGACAAATCGAAAGTTGAGCAGATTGACAGTGACAAAGCACCATACG
TCGTTTTGGTCGGAAATGTCGGAAGTGGAAAGTCAACAATCGTCGAAAAA
TTGACAGGAGAAAAAGGTCGGAGTTCGTCGTCAGCAGAAAGTGCAACAAG
AGCTACTGAATATTTCTGGACACCTGATCAAAGGCTTCTCATTGCTGACA
CTCCAGGCACCAACCCTCGAAAGGATAAACTGGAGCACAACAATGAAATT
GCTGCAGCATTGAGTTATCGAGAAGTTTCTAAATTTCTGATCGTCGCTAA
AGCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGCAATACAGTG
ATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATGGTAACCCAT
ATGGACATTAACAAAGAATGGGATGAAAGAGAaataaaagaggttttata
tgagcgatttgaaatttctgatgTCATCTTCAGTGGCAGCCATAAGATAG
CAGATGAAGTAAACAGAAGAATCATCGATACGTGTCAGACCTCATATAGG
ATAGATGTTGGATGTAGACTTTACAATGAACTTTTTAGGACTGAAGAGAG
TAATATAAAGATCTTGAAAATTACAAATGAAATTGTAAGAAGATTTGAGC
AGATAAGAAAGGATTTTGTAAAGAAACTAGCTTTATGCTCTCAACTGGAT
CGTGCTAATGctatatttgaatttttaacgTTCTTTAAAGAAAAGCAGCT
AGAAACAGGAAAGGCAGAGATGATATGCAAtctgaaatttaatttcaaag
gTGAAAATGGTGATTTACAAAAAGGTTTCTTGATTAACATGGAAAACCAA
GCAAATGCTGTGATGAGTGATTTGAGGAAAGAAGCTGCGTTTTACCAACT
TGAAGCAACTTCGGCTGTTAGACGTTGTCCCTTTTGCGGAACAGCTTGGG
AAAATCCTAACATTACAAAATGTAAGAAAGATAAAACGACCAGTGATTTA
GACActaaaatggcaaattttgtttttggtaTGTCAGAAAATGGACTAGT
ATTTAATAAAAAGATTGCATCACCAGGCTGTGGAAAAGTGATCACCTGGA
ATGAGATGTGTCCTGCAAACATAACATTTGCCACTTTTGAGCCTCCAACA
TCTCAAACAAAAGAAGTAGAGGAGACATCTAATGAAACTGATTCAAAGTC
TATCCATTCAAACCAAGCTAATCAGGAAGACACTAATGGCAAAGGAAAAA
GCTCAACTTTCGAATCTCCAATACGAACCGATTCAAACGAGGAGAAGGAG
CTTGGTGCTGCAAACTCGAACACACGTTCTCTCAGTTCTAACCAAACTAA
T
Run BLAST on NCBI

protein sequence of TCONS_00069223-protein

>TCONS_00069223-protein ID=TCONS_00069223-protein|Name=TCONS_00069223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MDNQRPIGTMIRHEAENDKSKVEQIDSDKAPYVVLVGNVGSGKSTIVEKL
TGEKGRSSSSAESATRATEYFWTPDQRLLIADTPGTNPRKDKLEHNNEIA
AALSYREVSKFLIVAKAHVRMDQTISEIKQYSDRFVELPDDLVGVMVTHM
DINKEWDEREIKEVLYERFEISDVIFSGSHKIADEVNRRIIDTCQTSYRI
DVGCRLYNELFRTEESNIKILKITNEIVRRFEQIRKDFVKKLALCSQLDR
ANAIFEFLTFFKEKQLETGKAEMICNLKFNFKGENGDLQKGFLINMENQA
NAVMSDLRKEAAFYQLEATSAVRRCPFCGTAWENPNITKCKKDKTTSDLD
TKMANFVFGMSENGLVFNKKIASPGCGKVITWNEMCPANITFATFEPPTS
QTKEVEETSNETDSKSIHSNQANQEDTNGKGKSSTFESPIRTDSNEEKEL
GAANSNTRSLSSNQTN
Run BLAST on NCBI

transcript from alignment at scaffold_496:92534..94290-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069223 ID=TCONS_00069223|Name=TCONS_00069223|organism=Clytia hemisphaerica|type=transcript|length=1757bp|location=Sequence derived from alignment at scaffold_496:92534..94290- (Clytia hemisphaerica)
TTCTTAATGAGAAGTTGTTAAATCAATCTAAGACACAAGTAAATTTGAAA
ACGAGTTTCAATTCTTACCAAGACGATTTTCTTCAATAGAACTGGAACTT
CAAATGGACAACCAGAGGCCAATTGGAACAATGATTCGACATGAAGCAGG
TAAATCAATTACGTGTGCCTAATTTTTTTTTCTCACTTTTACGGCAAAAC
CGCGTAAATTAGAACCCGCGGATTAAAAATTTAGCCCTTTTTCATGAAAA
ACCTCAAGGAAATTTAAGGAAATGTGTCCAAAATAATTTTGTTAATTCTT
ATTTTAACTCTTTTTTTTGACAGCGAAAATTAGTTCTCTTAAGGGAACAA
ATGACAAAAGCAAGTTAACGTTTTCATTCAGTCATGTCTTGTTTTCTTCC
TTCAGAAAATGACAAATCGAAAGTTGAGCAGATTGACAGTGACAAAGCAC
CATACGTCGTTTTGGTCGGAAATGTCGGAAGTGGAAAGTCAACAATCGTC
GAAAAATTGACAGGAGAAAAAGGTCGGAGTTCGTCGTCAGCAGAAAGTGC
AACAAGAGCTACTGAATATTTCTGGACACCTGATCAAAGGCTTCTCATTG
CTGACACTCCAGGCACCAACCCTCGAAAGGATAAACTGGAGCACAACAAT
GAAATTGCTGCAGCATTGAGTTATCGAGAAGTTTCTAAATTTCTGATCGT
CGCTAAAGCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGCAAT
ACAGTGATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATGGTA
ACCCATATGGACATTAACAAAGAATGGGATGAAAGAGAAATAAAAGAGGT
TTTATATGAGCGATTTGAAATTTCTGATGTCATCTTCAGTGGCAGCCATA
AGATAGCAGATGAAGTAAACAGAAGAATCATCGATACGTGTCAGACCTCA
TATAGGATAGATGTTGGATGTAGACTTTACAATGAACTTTTTAGGACTGA
AGAGAGTAATATAAAGATCTTGAAAATTACAAATGAAATTGTAAGAAGAT
TTGAGCAGATAAGAAAGGATTTTGTAAAGAAACTAGCTTTATGCTCTCAA
CTGGATCGTGCTAATGCTATATTTGAATTTTTAACGTTCTTTAAAGAAAA
GCAGCTAGAAACAGGAAAGGCAGAGATGATATGCAATCTGAAATTTAATT
TCAAAGGTGAAAATGGTGATTTACAAAAAGGTTTCTTGATTAACATGGAA
AACCAAGCAAATGCTGTGATGAGTGATTTGAGGAAAGAAGCTGCGTTTTA
CCAACTTGAAGCAACTTCGGCTGTTAGACGTTGTCCCTTTTGCGGAACAG
CTTGGGAAAATCCTAACATTACAAAATGTAAGAAAGATAAAACGACCAGT
GATTTAGACACTAAAATGGCAAATTTTGTTTTTGGTATGTCAGAAAATGG
ACTAGTATTTAATAAAAAGATTGCATCACCAGGCTGTGGAAAAGTGATCA
CCTGGAATGAGATGTGTCCTGCAAACATAACATTTGCCACTTTTGAGCCT
CCAACATCTCAAACAAAAGAAGTAGAGGAGACATCTAATGAAACTGATTC
AAAGTCTATCCATTCAAACCAAGCTAATCAGGAAGACACTAATGGCAAAG
GAAAAAGCTCAACTTTCGAATCTCCAATACGAACCGATTCAAACGAGGAG
AAGGAGCTTGGTGCTGCAAACTCGAACACACGTTCTCTCAGTTCTAACCA
AACTAAT

Coding sequence (CDS) from alignment at scaffold_496:92534..94290-

>TCONS_00069223 ID=TCONS_00069223|Name=TCONS_00069223|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_496:92534..94290- (Clytia hemisphaerica)
AAAATGACAAATCGAAAGTTGAGCAGATTGACAGTGACAAAGCACCATAC
GTCGTTTTGGTCGGAAATGTCGGAAGTGGAAAGTCAACAATCGTCGAAAA
ATTGACAGGAGAAAAAGGTCGGAGTTCGTCGTCAGCAGAAAGTGCAACAA
GAGCTACTGAATATTTCTGGACACCTGATCAAAGGCTTCTCATTGCTGAC
ACTCCAGGCACCAACCCTCGAAAGGATAAACTGGAGCACAACAATGAAAT
TGCTGCAGCATTGAGTTATCGAGAAGTTTCTAAATTTCTGATCGTCGCTA
AAGCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGCAATACAGT
GATCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATGGTAACCCA
TATGGACATTAACAAAGAATGGGATGAAAGAGAAATAAAAGAGGTTTTAT
ATGAGCGATTTGAAATTTCTGATGTCATCTTCAGTGGCAGCCATAAGATA
GCAGATGAAGTAAACAGAAGAATCATCGATACGTGTCAGACCTCATATAG
GATAGATGTTGGATGTAGACTTTACAATGAACTTTTTAGGACTGAAGAGA
GTAATATAAAGATCTTGAAAATTACAAATGAAATTGTAAGAAGATTTGAG
CAGATAAGAAAGGATTTTGTAAAGAAACTAGCTTTATGCTCTCAACTGGA
TCGTGCTAATGCTATATTTGAATTTTTAACGTTCTTTAAAGAAAAGCAGC
TAGAAACAGGAAAGGCAGAGATGATATGCAATCTGAAATTTAATTTCAAA
GGTGAAAATGGTGATTTACAAAAAGGTTTCTTGATTAACATGGAAAACCA
AGCAAATGCTGTGATGAGTGATTTGAGGAAAGAAGCTGCGTTTTACCAAC
TTGAAGCAACTTCGGCTGTTAGACGTTGTCCCTTTTGCGGAACAGCTTGG
GAAAATCCTAACATTACAAAATGTAAGAAAGATAAAACGACCAGTGATTT
AGACACTAAAATGGCAAATTTTGTTTTTGGTATGTCAGAAAATGGACTAG
TATTTAATAAAAAGATTGCATCACCAGGCTGTGGAAAAGTGATCACCTGG
AATGAGATGTGTCCTGCAAACATAACATTTGCCACTTTTGAGCCTCCAAC
ATCTCAAACAAAAGAAGTAGAGGAGACATCTAATGAAACTGATTCAAAGT
CTATCCATTCAAACCAAGCTAATCAGGAAGACACTAATGGCAAAGGAAAA
AGCTCAACTTTCGAATCTCCAATACGAACCGATTCAAACGAGGAGAAGGA
GCTTGGTGCTGCAAACTCGAACACACGTTCTCTCAGTTCTAACCAAACTA
ATATGGACAACCAGAGGCCAATTGGAACAATGATTCGACATGAAGCAGAA
AATGACAAATCGAAAGTTGAGCAGATTGACAGTGACAAAGCACCATACGT
CGTTTTGGTCGGAAATGTCGGAAGTGGAAAGTCAACAATCGTCGAAAAAT
TGACAGGAGAAAAAGGTCGGAGTTCGTCGTCAGCAGAAAGTGCAACAAGA
GCTACTGAATATTTCTGGACACCTGATCAAAGGCTTCTCATTGCTGACAC
TCCAGGCACCAACCCTCGAAAGGATAAACTGGAGCACAACAATGAAATTG
CTGCAGCATTGAGTTATCGAGAAGTTTCTAAATTTCTGATCGTCGCTAAA
GCGCATGTGCGAATGGATCAAACGATCAGTGAAATTAAGCAATACAGTGA
TCGATTTGTTGAACTTCCAGATGATTTGGTAGGTGTCATGGTAACCCATA
TGGACATTAACAAAGAATGGGATGAAAGAGAAATAAAAGAGGTTTTATAT
GAGCGATTTGAAATTTCTGATGTCATCTTCAGTGGCAGCCATAAGATAGC
AGATGAAGTAAACAGAAGAATCATCGATACGTGTCAGACCTCATATAGGA
TAGATGTTGGATGTAGACTTTACAATGAACTTTTTAGGACTGAAGAGAGT
AATATAAAGATCTTGAAAATTACAAATGAAATTGTAAGAAGATTTGAGCA
GATAAGAAAGGATTTTGTAAAGAAACTAGCTTTATGCTCTCAACTGGATC
GTGCTAATGCTATATTTGAATTTTTAACGTTCTTTAAAGAAAAGCAGCTA
GAAACAGGAAAGGCAGAGATGATATGCAATCTGAAATTTAATTTCAAAGG
TGAAAATGGTGATTTACAAAAAGGTTTCTTGATTAACATGGAAAACCAAG
CAAATGCTGTGATGAGTGATTTGAGGAAAGAAGCTGCGTTTTACCAACTT
GAAGCAACTTCGGCTGTTAGACGTTGTCCCTTTTGCGGAACAGCTTGGGA
AAATCCTAACATTACAAAATGTAAGAAAGATAAAACGACCAGTGATTTAG
ACACTAAAATGGCAAATTTTGTTTTTGGTATGTCAGAAAATGGACTAGTA
TTTAATAAAAAGATTGCATCACCAGGCTGTGGAAAAGTGATCACCTGGAA
TGAGATGTGTCCTGCAAACATAACATTTGCCACTTTTGAGCCTCCAACAT
CTCAAACAAAAGAAGTAGAGGAGACATCTAATGAAACTGATTCAAAGTCT
ATCCATTCAAACCAAGCTAATCAGGAAGACACTAATGGCAAAGGAAAAAG
CTCAACTTTCGAATCTCCAATACGAACCGATTCAAACGAGGAGAAGGAGC
TTGGTGCTGCAAACTCGAACACACGTTCTCTCAGTTCTAACCAAACTAAT
ATGGACAACCAGAGGCCAATTGGAACAATGATTCGACATGAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043141XLOC_043141Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069223-proteinTCONS_00069223-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069223-exon-scaffold_496-1575043694:94142..94290TCONS_00069223-exon-scaffold_496-1575043694:94142..94290Clytia hemisphaericaexon
TCONS_00069223-exon-scaffold_496-1575043694:92534..93885TCONS_00069223-exon-scaffold_496-1575043694:92534..93885Clytia hemisphaericaexon
TCONS_00069223-exon-scaffold_496-1510915933:94142..94290TCONS_00069223-exon-scaffold_496-1510915933:94142..94290Clytia hemisphaericaexon
TCONS_00069223-exon-scaffold_496-1510915933:92534..93885TCONS_00069223-exon-scaffold_496-1510915933:92534..93885Clytia hemisphaericaexon
TCONS_00069223-exon-scaffold_496-1491911889:94142..94290TCONS_00069223-exon-scaffold_496-1491911889:94142..94290Clytia hemisphaericaexon
TCONS_00069223-exon-scaffold_496-1491911889:92534..93885TCONS_00069223-exon-scaffold_496-1491911889:92534..93885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:92534..94290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.760804	0.507421	0.273838	0.228749	0.407338	0.146311	0.26998	0.473347	0.31081	0.458595	0.577809	0.453151	0.985279	1.01602	0.42108	0.293271	0.714649	0.796432	7.3941	3.74332	0.365082	0.219868	1.05971	1.18805	0.917359	1.42703	0.342313	0.522389	0.274302	0.372627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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