TCONS_00069214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069214
Unique NameTCONS_00069214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069214 ID=TCONS_00069214|Name=TCONS_00069214|organism=Clytia hemisphaerica|type=transcript|length=1913bp
CCATATGATACAATGATGATAAACCATGATATGACCAAGAAAACAGCTCA
GTACACACAGACCGCCACAGACCACCACAGACCACCACCACAGcttctaa
atatttttcatgtgACTCCGCCAACCATGATGTTAGAAATGTTGTGATTA
CCTCGATTATTAAGCagtatttttcttgaaaaagcttagattttttaaat
aagcgagacaaaaatattaaattccCGTCAATCAAACTAAAATAATCAGA
TCCACGAATTCTCTGAACGAATGTTTTTGGTATTACTGCTAACTTGGAAC
ATGTATTAATGACTTTTTAGAAACTCGCAAATTTCAGTCGCTGGTTTTCC
TCAAAACGTTCGAGGTGCCTGAATCCAgtcaaaacctttaaactttTAGG
AAGCTTCCTGTCGGAAAAACTACTTCATATATGTGAAAAGAAGATGGAGC
CTACCATTCATGCCAAGTCACCCCTTGCAAGCCCTGACCCATTCAAAGTG
TACACAAAACGGAGTGTGAAAATTGACTACAAGAAAAATCCAACAATGTC
AAAATGTCAAGGACAAGCAAGGATATTTCAAAGACGCTCAAGTGAGAAGC
CAAAAGTTCCAGTGTTGCAACCTTTAAAGATGATGATGTTCGATACAGAC
CCTCTGTCTTTGTTGACAGTGTCACAAAGTtcaggcattgactctccaga
ACTTGTTTCTACTCCAAAGGATCAAAATAAATCACAATCAAATATACCTA
TTGAAGCTTTAAATAGCACAGATCCCCTGAATTTATTTCCAGAAGATGAT
AATTCAATCACCAGGTCAGCTCGCAAACGTAAGAAAAAACGTCATCGAAC
ATCGTCAATAGTTTGTGGTGAAGACGAGGAATCATACAATACTTCAGAAT
TAATTTCCCCAACTGAAGAAACCCCATCAAAGCAACTTAAATATATCCAA
GACATTCGTTCTCCTATAGTCGAAAAGAATAATGAAAAGACAAAAGTATC
TTTAAAAAGATCCAAATTTAAGTATGGGAATTTCATTAGTTACAATAACA
CCAATGTCGAATCAAGTTCAGTTGACAATATTAAACCTTGGCAAATAAAT
AGGGACCAACGTTtacataatttcaaaaaagaatggtTTTCAGGGAAGAA
GTGTTTATCAATCGGATGCGGGGATGGTCAAATTGTGTATTGGATTACCA
AGAATTGCCATCCTTTGTTGATCACTGGCTTAGACATAGATGAAGGATTG
ATAAATATTGCTAAAAATAGGAGTAGAGAGTTTCAAGATAATCATATAAC
AGACAAATTAGATTTTCCGGTATCCATTCCAATGAGTTGTGGTCCTATTT
CTACTGGCTTTAAAATCACACCTAGAAATATAACCAGGAATAATAGTACC
TCATTCATCCATGGCGATTATGTACCAGCATCTCAACAAAGTTTGGAATC
CGTTCAACAGGAATATGAGACCATTGTCTTCTTGAGTACCAGTAAATGGA
TCCATCTCAATTATGGCGATGAAGGACTTAAACGCACTTTCAAGAAGATT
TTCTTTCAACTTCGTCCAGGTGGTCGGTTGTTGTTTGAACCACATACTAT
TAGCTGTTACAAAAAGTCAAGAAATCTAACGACTGGTATCCGGCAGACAT
ACGATAAGATGCGATTTCAACCGTCCGACTTCATCACTTATTTACTTTCA
TCTGAAGTTGGCTTCAAACAATCTGTTTGCTTGGCACATACACGAAAACG
AAAAACAAataacCTTCGACCGTTGTACTTACTTACAAAAGGTGATGGGT
GAAGCACAAATTTTAGCatacttaattttttatttcttgtacATTATATT
TCAACCTGTACATAGTAACCAAAAACTAAATCATCAAACATACCTAAGTC
CTATCAGATCATT
Run BLAST on NCBI

transcript from alignment at scaffold_496:706676..711245+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069214 ID=TCONS_00069214|Name=TCONS_00069214|organism=Clytia hemisphaerica|type=transcript|length=4570bp|location=Sequence derived from alignment at scaffold_496:706676..711245+ (Clytia hemisphaerica)
CCATATGATACAATGATGATAAACCATGATATGACCAAGAAAACAGCTCA
GTACACACAGACCGCCACAGACCACCACAGACCACCACCACAGcttctaa
atatttttcatgtgACTCCGCCAACCATGATGTTAGAAATGTTGTGATTA
CCTCGATTATTAAGCagtatttttcttgaaaaagcttagattttttaaat
aagcgagacaaaaatattaaattccCGTCAATCAAACTAAAATAATCAGA
TCCACGAATTCTCTGAACGAATGTTTTTGGTATTACTGCTAACTTGGAAC
ATGTATTAATGACTTTTTAGAAACTCGCAAATTTCAGTCGCTGGTTTTCC
TCAAAACGTTCGAGGTGCCTGAATCCAgtcaaaacctttaaactttTAGG
AAGCTTCCTGTCGGAAAAACTACTTCATATATGTGAAAAGAAGGTATGTA
ACATTATGTTTAACTCAAAGAAGTGTGGCTTGTATCATTAGGGAGATTTA
gtgatttttgtacgatttcTGGGGGCTCTGGGCGTTGCAGTTGTTTTCAG
TTTTAATATGACGACGTCATGGTCTGAGATGGAGAGACCTAATTCGTTCT
CCATCGTGGCAAAATTGTGAGAACCACAATTTTGATGTTGATTGTTCATT
TACATTTACCTAGTACCCCTCTAGGCCTCAAGAGTTCATCGAAAAGCATC
CCTTTACAGctgcttttgttttgttttttagttATTGTAAGAGTTTGTAA
GAAAAAGGTCTAAAAAAGAGTGGGCGTTGGAACCTACCTGTGGACCCTGG
CTAGAGGGGAGAGGAGGGCGAGCAAATTGGCTGAAAGGTGGGTATGTACA
GCACTCACGCAAGGGGGGTTTCAGGGGATACTCGATTCCGCAATTCTGct
aattttttctccaatttccgtcaaactgTTTAAAATTGAACCTAAATTCT
GCCACCAAAAATTCCTTTAAAATTCGAGATTATTGTCAAAAATTCCgcga
attttgaatattttttgccaattccaaaattctgcaaaagcTCCACCAAC
CATGAACCCCCCGGCACACAAGTCAAAGTGTGCTCCTGTCTCTGGCAGAT
TTCCGTCTACGTGAAGTAAATAAAGATTTTGTTTCTTTTAGGGAGCCGta
catattcatttgacaacgcatagcgtcaaattgacgttacgagggggtgg
ggggttttcaaaagttgggtttgacgttataagaaatcaaaggtatacct
ttttgtCAAAATCGCGAATATTTGTTTTACCACCAACCACACTATACTTT
TTAAGTTGtcgaaaatatatttgtgtatgaattacatgaaaatttgcttg
cataatcccattggttcGCGCTATGATGTCATTACgtatcatattttcat
tgtttgcgcaATCAAGCGACGGCACGGACCTAGCGCTAAGTGGagctttt
gatttctttctaaataaaggtcattagttaaaagaacacatacacgCACG
TCTACAACCAAGTACGGACTTTGCGatgggaaaactttgatgaaaaaatg
gcaacaacttttggtatacaaactttcaaaagtttcaaactTGCCAAAAT
TTAAATATTGTTAAATTATTATTGTTTAatatttcatttatcagggttgt
tttgtaccgaaaatgttttccaaaaaatttccaaaaaaaagaattttttt
ttaacctaCCACCCAGTGTTTAATAGTTAtgtattttaaaatcttttcta
GATGGAGCCTACCATTCATGCCAAGTCACCCCTTGCAAGCCCTGACCCAT
TCAAAGTGTACACAAAACGGAGTGTGAAAATTGACTACAAGAAAAATCCA
ACAATGTCAAAATGTCAAGGTAGGCTATAGCGATTTCTTTAATTCGCCCA
TTGTGATGTATTTCCTTTCAGCAATGATATTTGTTTTTCAACAAGGTATT
CTAAAGCCTGTGGTCAAGTAAAACATACAATATAGTCCATAATTATTTGC
TCACATTCACTAAGTTCTCTTACACAGCAAAGCAATTTAAATTATATTAA
AATTGTATTTAACTTCATGCCTTTATTCATTTAGGACAAGCAAGGATATT
TCAAAGACGCTCAAGTGAGAAGCCAAAAGTTCCAGTGTTGCAACCTTTAA
AGATGATGATGTTCGATACAGACCCTCTGTCTTTGTTGACAGTGTCACAA
AGTtcaggcattgactctccagaACTTGTTTCTACTCCAAAGGATCAAAA
TAAATCACAATCAAATATACCTATTGAAGCTTTAAATAGCACAGATCCCC
TGAATTTATTTCCAGAAGATGATAATTCAATCACCAGGTCAGCTCGCAAA
CGTAAGAAAAAACGTCATCGAACATCGTCAATAGTTTGTGGTGAAGACGA
GGAATCATACAATACTTCAGAATTAATTTCCCCAACTGAAGAAACCCCAT
CAAAGCAACTTAAATATATCCAAGACATTCGTTCTCCTATAGTCGAAAAG
AATAATGAAAAGACAAAAGTATCTTTAAAAAGATCCAAATTTAAGTATGG
GAATTTCATTAGTTACAATAACACCAATGTCGAATCAAGTTCAGTTGACA
ATATTAAACCTTGGCAAATAAATAGGGACCAACGTTtacataatttcaaa
aaagaatggtTTTCAGGGAAGAAGTGTTTATCAATCGGATGCGGGGATGG
TCAAATTGTGTATTGGATTACCAAGAATTGCCATCCTTTGTTGATCACTG
GCTTAGACATAGATGAAGGATTGATAAATATTGCTAAAAATAGGAGTAGA
GAGTTTCAAGATAATCATATAACAGACAAATTAGATTTTCCGGTATCCAT
TCCAATGAGTTGTGGTCCTATTTCTACTGGCTTTAAAATCACACCTAGAA
ATATAACCAGGAATAATAGTACCTCATTCATCCATGTAAGTCTTTCAATA
TGTTAATTTACTTGTACTGTGATTAAAAACGTCTTTATATTCTCTTCGGC
TAAGTGAAagctttgatttgatttttttgagctCTATATTTTGTTGGTAA
CATATTTATTTAGGGTGATGATCCATGAACCATCTTGACACGCACCTTCA
TTTCACAAGATGCAATTCTGGAAGGTGGTGACTCCTACAAAAATGGTTTC
TTTGGCATGTATGGAAGAGAACAAAATATCCCCCATTTTCTGATCCTCTT
CGTGCAAAGTGTCTCTTTCTATCATTACATCGCCATCATTTTACGATAAA
GGTTAGACCCAAAAGAGATGCCTTTTGAATTGAGATTCAAGCCTGCACTA
AATGGCACTAGAAANAAAAGGTTAGACCCAAAGGAGATGCCTTTTGAATT
GAGATTCAAGCCTGCACTAAATGGCACTAGAAAAGATTAGTTTGAAGGGA
TATTGCCATAATCATGTAACTGTCTTGTGGTATTTGCACCTAAAGATTTG
GATGACAAATTTGTGCTTTTAATACTAATGAATTGTTCAAACTTTATTTC
TCAGGGCGATTATGTACCAGCATCTCAACAAAGTTTGGAATCCGTTCAAC
AGGAATATGAGACCATTGTCTTCTTGAGTACCAGTAAATGGATCCATCTC
AATTATGGCGATGAAGGACTTAAACGCACTTTCAAGAAGATTTTCTTTCA
ACTTCGTCCAGGTGGTCGGTTGTTGTTTGAACCACATACTATTAGCTGTT
ACAAAAAGTCAAGAAATCTAACGGTAATTGTCTTTTTAAATGGAACTGAT
TTATAGTGAGTCCCACctaaattctgtcatttttaatGCATGTACGCTGT
AGCCAAATGCATTGGTTTTATCCGTTTTGCTCTAATCTCTAGCAAGGATC
CATTTTCTTTTGACCTGATTGCTTGCAGCGAGTCTAAACCAACACGCCCT
TTTTTGGTTACGAAATTTATGCTATCGTAAATCTTTTGCTGAAAAACGTC
ATATAATGAAAGTCTCAGAACCCTTTGTCGTTTACTGTATGTAAAAGTAT
GATACGACTCTTAACCTAACCGATGTAAATCATAtaatgtctctttttat
tgGAATTTAGACTGGTATCCGGCAGACATACGATAAGATGCGATTTCAAC
CGTCCGACTTCATCACTTATTTACTTTCATCTGAAGTTGGCTTCAAACAA
TCTGTTTGCTTGGCACATACACGAAAACGAAAAACAAGTAAGAAATTCTC
CTCTAAAGACTTCGTAATGGCTTCCTTCTTCTTTTATCTTTGTTGGATTG
TTTCCACGATAAAAAGTTgtgttgatttcatttttttttcgcaCTGAAGT
CTCTATATCATTTTGAGCGGAAGCTCTTAACTAATCTCTAGTAAAGCGAA
CGTAATTAAAATTTCTAGTTCGATTATTTTATACTTATACATTATtactt
ctgtttttttttcagataacCTTCGACCGTTGTACTTACTTACAAAAGGT
GATGGGTGAAGCACAAATTTTAGCatacttaattttttatttcttgtacA
TTATATTTCAACCTGTACATAGTAACCAAAAACTAAATCATCAAACATAC
CTAAGTCCTATCAGATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043136XLOC_043136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069214-exon-scaffold_496-1491911889:706676..707118TCONS_00069214-exon-scaffold_496-1491911889:706676..707118Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1510915933:706676..707118TCONS_00069214-exon-scaffold_496-1510915933:706676..707118Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1575043694:706676..707118TCONS_00069214-exon-scaffold_496-1575043694:706676..707118Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1491911889:708427..708544TCONS_00069214-exon-scaffold_496-1491911889:708427..708544Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1510915933:708427..708544TCONS_00069214-exon-scaffold_496-1510915933:708427..708544Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1575043694:708427..708544TCONS_00069214-exon-scaffold_496-1575043694:708427..708544Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1491911889:708760..709610TCONS_00069214-exon-scaffold_496-1491911889:708760..709610Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1510915933:708760..709610TCONS_00069214-exon-scaffold_496-1510915933:708760..709610Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1575043694:708760..709610TCONS_00069214-exon-scaffold_496-1575043694:708760..709610Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1491911889:710180..710398TCONS_00069214-exon-scaffold_496-1491911889:710180..710398Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1510915933:710180..710398TCONS_00069214-exon-scaffold_496-1510915933:710180..710398Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1575043694:710180..710398TCONS_00069214-exon-scaffold_496-1575043694:710180..710398Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1491911889:710736..710862TCONS_00069214-exon-scaffold_496-1491911889:710736..710862Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1510915933:710736..710862TCONS_00069214-exon-scaffold_496-1510915933:710736..710862Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1575043694:710736..710862TCONS_00069214-exon-scaffold_496-1575043694:710736..710862Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1491911889:711091..711245TCONS_00069214-exon-scaffold_496-1491911889:711091..711245Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1510915933:711091..711245TCONS_00069214-exon-scaffold_496-1510915933:711091..711245Clytia hemisphaericaexon
TCONS_00069214-exon-scaffold_496-1575043694:711091..711245TCONS_00069214-exon-scaffold_496-1575043694:711091..711245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:706676..711245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91578	1.61674	1.61052	0.743563	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.528369	0	0.602382	1.41388	0	0	0	0	0.222895	0
Blast
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BLAST of TCONS_00069214 vs. Swiss-Prot (Human)
Match: MEPCE (7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.856e-37
Identity = 92/295 (31.19%), Postives = 134/295 (45.42%), Query Frame = 3 
Query: 1005 KRSKFKYGNFI---SYNNTNVESSSVDNIKPWQINRDQRLHNFKKEWFSGKKCLSIGCGDGQIVYWITKNCHPLLITGLDIDEGLINIAKNRSREFQDNH----------------------ITDKLDFPVSIPMSCGPIST--------GFKITPRNITRNNSTSFIHGDYVPASQQSLESVQQEYETIVFLSTSKWIHLNYGDEGLKRTFKKIFFQLRPGGRLLFEPHTISCYKKSRNLTTGIRQTYDKMRFQPSDFITYLLSSEVGFKQSVCLAHTRKRKTNNLRPLYLLTK 1790
            ++ KF+YGN+     Y N + E              D RL   K EWF G+  L +GC  G +   I     P  + GLDID  LI+ A+   R +                          +  +  FP S+  S GPI+            + P N+       F+ G+YV      +E+   EY+ ++ LS +KW+HLN+GDEGLKR F++I+  LRPGG L+ EP   S Y K + LT  I + Y +++ +P  F +YL S +VGF     +A          RP+YL  K
Sbjct:  409 QQRKFQYGNYCKYYGYRNPSCE--------------DGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVV------FVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHK 683
The following BLAST results are available for this feature:
BLAST of TCONS_00069214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEPCE1.856e-3731.197SK snRNA methylphosphate capping enzyme OS=Homo s... [more]
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