TCONS_00069204 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069204
Unique Name	TCONS_00069204
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	227

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_496:629040..634653+

transcript sequence

>TCONS_00069204 ID=TCONS_00069204|Name=TCONS_00069204|organism=Clytia hemisphaerica|type=transcript|length=227bp
ACTTCTGTCCAATCACAATCAACCTCGATCACAAGTTTAGCACCTTCAAG
CTCGGGATTTTCTGAGcttccaaaatctttgattacACAAACCGTTGAAA
GCTTTACGACGTCGGTAGTGGAAACATCTTCAGGAGTTGTCTTCACGCCT
TCCTCAGGAACAACATCACGCCCACCATTCccTCCATTTACTATCCCAAT
ACCATCGTCAAGTACTTCATTTGCCTC

Run BLAST on NCBI

transcript from alignment at scaffold_496:629040..634653+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069204 ID=TCONS_00069204|Name=TCONS_00069204|organism=Clytia hemisphaerica|type=transcript|length=5614bp|location=Sequence derived from alignment at scaffold_496:629040..634653+ (Clytia hemisphaerica)
ACTTCTGTCCAATCACAATCAACCTCGATCACAAGTTTAGCACCTTCAAG
CTCGGTAGGTGTTCTTTGAACATTGGTTTAGAGGAAAATGCTCTTACTAT
TgtttttagtttattttcaTAAGACAGACACAAATAATTAATATGAAAAA
GAACTTTAAGTCAATTAGGCAATGACTTAATATTATAAAATCCACTGGCG
AGGGGTAGGGTCTTTTTCTTTCAAGTTTGTTAGCAAAAACGTTGTTTTTC
AAATACTATTTGCCTCAAGTGCCATGATTGCTTTTAAACGAAGGAAAGGT
GTTCCGAAATTTGGTCTTCTAAATTACAATAATAATTACTTTTTTCTACC
AGGGATTTTCTGAGcttccaaaatctttgattacACAAACCGTTGAAAGC
TTTACGACGTCGGTAGTGGAAACATCTTCAGGAGTTGTCTTCACGCCTTC
CTCAGGAACAACATCACGCCCACCATTCGTAAGTAGTGCTTATAAAGttt
ccattgaatatttcttTCATGAAACTATATATCTAAGTACTTTCAACAGG
GATACGTATCCCACCAGTCCCTTCTAACATTTCCAATCATGTTTATTAGT
AGACTAGAAAATACAACCGTAGCAAAGCCTTCTTATCAGAATTTAGTTTT
GAGGCTAATGGTAATACTTATCTATGCACTTGAAATCTTCGACCCAATAA
TAGTCTTTGATTTCatatgaatttcatttttctaaagttttaaaattgct
tCTGCCATACAAAGCCGAAATTTCTACgataaatgaaattttgatctaga
aaatTATTAAGTTTGTAATCAAAGATTTTCTGCTAAAATTGCACAATGTT
TTAGCATCCTAGCTTATCTTGCATGcctaatttttatcaaaatctacATA
TAGATGTTATTACACAAACAAAGCATTAAATTTGCctccaaaataagaaa
atcaccTTTTTAAATAAGCTAACAAATCAACAAGGAATTGTTTGACCTAC
TTTTAGAAGGAATGGTTattaaaaattgagtaaaaatttttttctttata
gccTCCATTTACTATCCCAATACCATCGTCAAGTACTTCATTTGCCTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNAAATTTCTACgataaatgaaattttgatcta
gaaaatTATTAAGTTTataatcaaagattttcctGCTAAAATTGCACAAT
GTTTTAGCATCCTAGCTTATCTTGCATGcctaatttttatcaaaatctac
ATATAGATGTTATTACACAAACAAAGCATTAAATTTGCctccaaaataag
aaaatcaccTTTTTAAATAAGCTAACAAATCAACAAGGAATTGTTTGACC
TACTTTTAGAAGGAATGGTTattaaaaattgagtaaaaatttttttcttt
gtagcCTCCATTTACTATCCCAATACCATCGTCAAGTACTTCATTTGCCT
CATCATCGACCTCGAGTGTGTCCacatcaacaagtgtcagcacataCAAA
CCAGTCACTACTTCTGTAcaatcaccatcaccatctacAAGCAAACTAGC
CCCATCGACATCAATCGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTC
CATACGTCAGTACTTCTGTATTTACACCATCTTCGAGCTCTGTATTTACC
TCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagcacata
CAAACCAGTCACTACCTCTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNTTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagt
gtcagcacatacaaaccagtcactacttctgtccaatcaccatcatcatc
tacaagcaaaccagctccatcgACATCGATAGCTAGCTCATCAAGCCAAG
TAAGCTCAAGTACAAGCCAAACAACTTACACTGAATCTACATATGCAAGC
ACTCAATCTCAAGTTGTGAGCACATCAAGCCCATATGTCAGTTCCTCGGT
ATCTACACCTTCATCGAGCTCAGCATTTACCTCAAGCAGTGCaagttcaa
gtgtgtcaacatcaacaagtgtcagTACATACAAACCAGTTACTACTTCA
GTttcatcaccatcaccatctacaagcaaaccagctccatcgACATCGAT
TGCTAGCTCATCAAGTCAAGCTACAAGCAGTACTCCATATGTTAGTACTT
CTGTATCTACACCATCTTCAAGCTCAGTATTCACCTCAAGCAGTGCaagt
tcaagtgtgtcaacatcaacaagtgtcagcaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatttcatttttctaa
agttttaaaattgcttCTGCCATACAAAGCCGAAATTTCTACgataaatg
aaattttgatctagaaaatTATTAACTTTATAATCAAAGAGTTTCCTGCT
AAAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaatttt
tatcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATTTG
CctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACAAG
GAATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaaa
aatttttttctttatagccTCCATTTACTATCCCAATACCATCGTCAAGT
ACTTCATTTGCCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043133	XLOC_043133	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069204-exon-scaffold_496-1491911889:629040..629093	TCONS_00069204-exon-scaffold_496-1491911889:629040..629093	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1510915933:629040..629093	TCONS_00069204-exon-scaffold_496-1510915933:629040..629093	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1575043694:629040..629093	TCONS_00069204-exon-scaffold_496-1575043694:629040..629093	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1491911889:629392..629517	TCONS_00069204-exon-scaffold_496-1491911889:629392..629517	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1510915933:629392..629517	TCONS_00069204-exon-scaffold_496-1510915933:629392..629517	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1575043694:629392..629517	TCONS_00069204-exon-scaffold_496-1575043694:629392..629517	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1491911889:634607..634653	TCONS_00069204-exon-scaffold_496-1491911889:634607..634653	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1510915933:634607..634653	TCONS_00069204-exon-scaffold_496-1510915933:634607..634653	Clytia hemisphaerica	exon
TCONS_00069204-exon-scaffold_496-1575043694:634607..634653	TCONS_00069204-exon-scaffold_496-1575043694:634607..634653	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_496	supercontig	scaffold_496:629040..634653 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0444389	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069204 vs. Swiss-Prot (Human)

BLAST of TCONS_00069204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069204 (transcript) - C. hemisphaerica