TCONS_00069202 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069202
Unique Name	TCONS_00069202
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1191

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_496:629026..635734+

transcript sequence

>TCONS_00069202 ID=TCONS_00069202|Name=TCONS_00069202|organism=Clytia hemisphaerica|type=transcript|length=1191bp
ACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCGATCACAAGT
TTAGCACCTTCAAGCTCGGGATTTTCTGAGcttccaaaatctttgattac
ACAAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCTTCAGGAG
TTGTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATTCcCTCCA
TTTACTATCCCAATACCATCGTCAAGTACTTCATTTGCCTCATCATCGAC
CTCGAGTGTGTCCacatcaacaagtgtcagcacatacaaaccagtcacta
cttctgtccaatcaccatcaccatctacAAGCANAACCAGTCACTACTTC
CGTccaatcaccatcaccatctacaagcaaaccagctccatcgACATCAA
TTGCAAGCTCATCAAGCCAAGCTACGAGCAGTACTCCATACGTTAGTTCT
TCTGTATCTACACCATCTTCGAGCTCAGTATTTACCTCGAGCAGTGTAAG
TTCAAGTGtatcaacatcaacaagtgtcagcacatacaaaccagtcacta
cttctgtccaatcaccatcaccatctacaagcaaaccagctccatcgACA
TCAATTGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATACGTTAG
TACTTCTGTATCTACACCATCTTCGAGCTCAGTATTTACCTCGAGCAGTG
CAAGTTCAAGTGtatcaacatcaacaagtgtcagcacatacaaaccagtc
actacttctgtccaatcaccgtcaccatctacaagcaaaccagctccatc
gACATCAATTGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATACG
TTAGTACTTCTGTATCTACACCTTCATCGAGCTCAGCATTTACCTCAAGC
AGTGCaagttcaagtgtgtcaacatcaacaagtgtcagcacatacaaacc
ggtcactacttctgtccaatcaccatcaccatctacAAGCAAGCCAGCTC
CATCGACATCGATTGCTAGCTCATCAAGCCAAGTAAGTTCAAGCACAAGC
CAAACAACTTACACTGAATCTACATATGCAAGCACACAATCTCAAGTTGT
GAGCACATCAAGCCCATATGTCAGTTCCTCGGTATCTACACCTTCATCGA
GCTCAGCATTTACCTCAAGCAGTGCAAGTTCAAGTGTGTNN

Run BLAST on NCBI

transcript from alignment at scaffold_496:629026..635734+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069202 ID=TCONS_00069202|Name=TCONS_00069202|organism=Clytia hemisphaerica|type=transcript|length=6709bp|location=Sequence derived from alignment at scaffold_496:629026..635734+ (Clytia hemisphaerica)
ACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCGATCACAAGT
TTAGCACCTTCAAGCTCGGTAGGTGTTCTTTGAACATTGGTTTAGAGGAA
AATGCTCTTACTATTgtttttagtttattttcaTAAGACAGACACAAATA
ATTAATATGAAAAAGAACTTTAAGTCAATTAGGCAATGACTTAATATTAT
AAAATCCACTGGCGAGGGGTAGGGTCTTTTTCTTTCAAGTTTGTTAGCAA
AAACGTTGTTTTTCAAATACTATTTGCCTCAAGTGCCATGATTGCTTTTA
AACGAAGGAAAGGTGTTCCGAAATTTGGTCTTCTAAATTACAATAATAAT
TACTTTTTTCTACCAGGGATTTTCTGAGcttccaaaatctttgattacAC
AAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCTTCAGGAGTT
GTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATTCGTAAGTAG
TGCTTATAAAGtttccattgaatatttcttTCATGAAACTATATATCTAA
GTACTTTCAACAGGGATACGTATCCCACCAGTCCCTTCTAACATTTCCAA
TCATGTTTATTAGTAGACTAGAAAATACAACCGTAGCAAAGCCTTCTTAT
CAGAATTTAGTTTTGAGGCTAATGGTAATACTTATCTATGCACTTGAAAT
CTTCGACCCAATAATAGTCTTTGATTTCatatgaatttcatttttctaaa
gttttaaaattgcttCTGCCATACAAAGCCGAAATTTCTACgataaatga
aattttgatctagaaaatTATTAAGTTTGTAATCAAAGATTTTCTGCTAA
AATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaattttta
tcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATTTGCc
tccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACAAGGA
ATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaaaaa
tttttttctttatagccTCCATTTACTATCCCAATACCATCGTCAAGTAC
TTCATTTGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTCTACgataaat
gaaattttgatctagaaaatTATTAAGTTTataatcaaagattttcctGC
TAAAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaattt
ttatcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATTT
GCctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACAA
GGAATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaa
aaatttttttctttgtagcCTCCATTTACTATCCCAATACCATCGTCAAG
TACTTCATTTGCCTCATCATCGACCTCGAGTGTGTCCacatcaacaagtg
tcagcacataCAAACCAGTCACTACTTCTGTAcaatcaccatcaccatct
acAAGCAAACTAGCCCCATCGACATCAATCGCAAGCTCATCAAGCCAAGC
TACAAGCAGTACTCCATACGTCAGTACTTCTGTATTTACACCATCTTCGA
GCTCTGTATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaaca
agtgtcagcacataCAAACCAGTCACTACCTCTGTCCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTACCTCAAGCAGTGCaagttcaagtgtgt
caacatcaacaagtgtcagcacatacaaaccagtcactacttctgtccaa
tcaccatcatcatctacaagcaaaccagctccatcgACATCGATAGCTAG
CTCATCAAGCCAAGTAAGCTCAAGTACAAGCCAAACAACTTACACTGAAT
CTACATATGCAAGCACTCAATCTCAAGTTGTGAGCACATCAAGCCCATAT
GTCAGTTCCTCGGTATCTACACCTTCATCGAGCTCAGCATTTACCTCAAG
CAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagTACATACAAAC
CAGTTACTACTTCAGTttcatcaccatcaccatctacaagcaaaccagct
ccatcgACATCGATTGCTAGCTCATCAAGTCAAGCTACAAGCAGTACTCC
ATATGTTAGTACTTCTGTATCTACACCATCTTCAAGCTCAGTATTCACCT
CAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagcaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaa
tttcatttttctaaagttttaaaattgcttCTGCCATACAAAGCCGAAAT
TTCTACgataaatgaaattttgatctagaaaatTATTAACTTTATAATCA
AAGAGTTTCCTGCTAAAATTGCACAATGTTTTAGCATCCTAGCTTATCTT
GCATGcctaatttttatcaaaatctacATATAGATGTTATTACACAAACA
AAGCATTAAATTTGCctccaaaataagaaaatcaccTTTTTAAATAAGCT
AACAAATCAACAAGGAATTGTTTGACCTACTTTTAGAAGGAATGGTTatt
aaaaattgagtaaaaatttttttctttatagccTCCATTTACTATCCCAA
TACCATCGTCAAGTACTTCATTTGCCTCNCTAACAAATCAACAAGGAATT
GTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaaaaattt
ttttctttatagccTCCATTTACTATCCCAATTCCATCGTCAAGTACTTC
ATTTGCCTCGTCATCGACCTCGAGTGTGTCCacatcaacaagtgtcagca
catacaaaccagtcactacttctgtccaatcaccatcaccatctacAAGC
ANAACCAGTCACTACTTCCGTccaatcaccatcaccatctacaagcaaac
cagctccatcgACATCAATTGCAAGCTCATCAAGCCAAGCTACGAGCAGT
ACTCCATACGTTAGTTCTTCTGTATCTACACCATCTTCGAGCTCAGTATT
TACCTCGAGCAGTGTAAGTTCAAGTGtatcaacatcaacaagtgtcagca
catacaaaccagtcactacttctgtccaatcaccatcaccatctacaagc
aaaccagctccatcgACATCAATTGCAAGCTCATCAAGCCAAGCTACAAG
CAGTACTCCATACGTTAGTACTTCTGTATCTACACCATCTTCGAGCTCAG
TATTTACCTCGAGCAGTGCAAGTTCAAGTGtatcaacatcaacaagtgtc
agcacatacaaaccagtcactacttctgtccaatcaccgtcaccatctac
aagcaaaccagctccatcgACATCAATTGCAAGCTCATCAAGCCAAGCTA
CAAGCAGTACTCCATACGTTAGTACTTCTGTATCTACACCTTCATCGAGC
TCAGCATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaag
tgtcagcacatacaaaccggtcactacttctgtccaatcaccatcaccat
ctacAAGCAAGCCAGCTCCATCGACATCGATTGCTAGCTCATCAAGCCAA
GTAAGTTCAAGCACAAGCCAAACAACTTACACTGAATCTACATATGCAAG
CACACAATCTCAAGTTGTGAGCACATCAAGCCCATATGTCAGTTCCTCGG
TATCTACACCTTCATCGAGCTCAGCATTTACCTCAAGCAGTGCAAGTTCA
AGTGTGTNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043133	XLOC_043133	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069202-exon-scaffold_496-1491911889:629026..629093	TCONS_00069202-exon-scaffold_496-1491911889:629026..629093	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1510915933:629026..629093	TCONS_00069202-exon-scaffold_496-1510915933:629026..629093	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1575043694:629026..629093	TCONS_00069202-exon-scaffold_496-1575043694:629026..629093	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1491911889:629392..629517	TCONS_00069202-exon-scaffold_496-1491911889:629392..629517	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1510915933:629392..629517	TCONS_00069202-exon-scaffold_496-1510915933:629392..629517	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1575043694:629392..629517	TCONS_00069202-exon-scaffold_496-1575043694:629392..629517	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1491911889:631344..631399	TCONS_00069202-exon-scaffold_496-1491911889:631344..631399	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1510915933:631344..631399	TCONS_00069202-exon-scaffold_496-1510915933:631344..631399	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1575043694:631344..631399	TCONS_00069202-exon-scaffold_496-1575043694:631344..631399	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1491911889:634794..635734	TCONS_00069202-exon-scaffold_496-1491911889:634794..635734	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1510915933:634794..635734	TCONS_00069202-exon-scaffold_496-1510915933:634794..635734	Clytia hemisphaerica	exon
TCONS_00069202-exon-scaffold_496-1575043694:634794..635734	TCONS_00069202-exon-scaffold_496-1575043694:634794..635734	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_496	supercontig	scaffold_496:629026..635734 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18009	0.141191	0.0724815	0	4.21488	3.9156	26.7357	46.1953	70.0258	73.0696	112.996	96.2926	5.97097	4.85871	0.627366	2.8918	9.68558	11.4084	35.0243	48.9603	17.2204	21.6246	5.07876	10.8983	6.2184	8.71198	1.54258	2.04129	1.25027	0.752655

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069202 vs. Swiss-Prot (Human)

BLAST of TCONS_00069202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069202 (transcript) - C. hemisphaerica