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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069200 ID=TCONS_00069200|Name=TCONS_00069200|organism=Clytia hemisphaerica|type=transcript|length=515bp
TACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCGATCACAAG
TTTAGCACCTTCAAGCTCGGGATTTTCTGAGcttccaaaatctttgatta
cACAAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCTTCAGGA
GTTGTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATTCcCTCC
ATTTACTATCCCAATACCATCGTCAAGTACTTCATTTGCCTCATCATCGA
CCTCGAGTGTGTCCacatcaacaagtgtcagcacataCAAACCAGTCACT
ACTTCTGTAcaatcaccatcaccatctacAAGCAAACTAGCCCCATCGAC
ATCAATCGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATACGTCA
GTACTTCTGTATTTACACCATCTTCGAGCTCTGTATTTACCTCAAGCAGT
GCaagttcaagtgtgtcaacatcaacaagtgtcagcacataCAAACCAGT
CACTACCTCTGTCCA Run BLAST on NCBI transcript from alignment at scaffold_496:629025..631663+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069200 ID=TCONS_00069200|Name=TCONS_00069200|organism=Clytia hemisphaerica|type=transcript|length=2639bp|location=Sequence derived from alignment at scaffold_496:629025..631663+ (Clytia hemisphaerica)
TACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCGATCACAAG
TTTAGCACCTTCAAGCTCGGTAGGTGTTCTTTGAACATTGGTTTAGAGGA
AAATGCTCTTACTATTgtttttagtttattttcaTAAGACAGACACAAAT
AATTAATATGAAAAAGAACTTTAAGTCAATTAGGCAATGACTTAATATTA
TAAAATCCACTGGCGAGGGGTAGGGTCTTTTTCTTTCAAGTTTGTTAGCA
AAAACGTTGTTTTTCAAATACTATTTGCCTCAAGTGCCATGATTGCTTTT
AAACGAAGGAAAGGTGTTCCGAAATTTGGTCTTCTAAATTACAATAATAA
TTACTTTTTTCTACCAGGGATTTTCTGAGcttccaaaatctttgattacA
CAAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCTTCAGGAGT
TGTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATTCGTAAGTA
GTGCTTATAAAGtttccattgaatatttcttTCATGAAACTATATATCTA
AGTACTTTCAACAGGGATACGTATCCCACCAGTCCCTTCTAACATTTCCA
ATCATGTTTATTAGTAGACTAGAAAATACAACCGTAGCAAAGCCTTCTTA
TCAGAATTTAGTTTTGAGGCTAATGGTAATACTTATCTATGCACTTGAAA
TCTTCGACCCAATAATAGTCTTTGATTTCatatgaatttcatttttctaa
agttttaaaattgcttCTGCCATACAAAGCCGAAATTTCTACgataaatg
aaattttgatctagaaaatTATTAAGTTTGTAATCAAAGATTTTCTGCTA
AAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaattttt
atcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATTTGC
ctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACAAGG
AATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaaaa
atttttttctttatagccTCCATTTACTATCCCAATACCATCGTCAAGTA
CTTCATTTGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTCTACgataaa
tgaaattttgatctagaaaatTATTAAGTTTataatcaaagattttcctG
CTAAAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaatt
tttatcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATT
TGCctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACA
AGGAATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagta
aaaatttttttctttgtagcCTCCATTTACTATCCCAATACCATCGTCAA
GTACTTCATTTGCCTCATCATCGACCTCGAGTGTGTCCacatcaacaagt
gtcagcacataCAAACCAGTCACTACTTCTGTAcaatcaccatcaccatc
tacAAGCAAACTAGCCCCATCGACATCAATCGCAAGCTCATCAAGCCAAG
CTACAAGCAGTACTCCATACGTCAGTACTTCTGTATTTACACCATCTTCG
AGCTCTGTATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaac
aagtgtcagcacataCAAACCAGTCACTACCTCTGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069200-exon-scaffold_496-1491911889:629025..629093 | TCONS_00069200-exon-scaffold_496-1491911889:629025..629093 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1510915933:629025..629093 | TCONS_00069200-exon-scaffold_496-1510915933:629025..629093 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1575043694:629025..629093 | TCONS_00069200-exon-scaffold_496-1575043694:629025..629093 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1491911889:629392..629517 | TCONS_00069200-exon-scaffold_496-1491911889:629392..629517 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1510915933:629392..629517 | TCONS_00069200-exon-scaffold_496-1510915933:629392..629517 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1575043694:629392..629517 | TCONS_00069200-exon-scaffold_496-1575043694:629392..629517 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1491911889:631344..631663 | TCONS_00069200-exon-scaffold_496-1491911889:631344..631663 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1510915933:631344..631663 | TCONS_00069200-exon-scaffold_496-1510915933:631344..631663 | Clytia hemisphaerica | exon |
| TCONS_00069200-exon-scaffold_496-1575043694:631344..631663 | TCONS_00069200-exon-scaffold_496-1575043694:631344..631663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:629025..631663 + |
Blast
The following BLAST results are available for this feature:
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