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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069172 ID=TCONS_00069172|Name=TCONS_00069172|organism=Clytia hemisphaerica|type=transcript|length=2820bp ACTTATTCTTTAACTAttaaactttctttttctaGATTTGTGCAGTTTCC CAGATTTCTCAAAAGGATCTGCAGTTGCAACGATTACTAACTGACATCTA TATACCAAACCCAAAAAGCAAACTTATTCGAGGAAGAAACCAATTCAATC AGTTAACTGTTAAAACATGGTCGTGGTACGTTCCCTGAAAGATATTTTGG CACTCAAAATCAAAGCACGTCATGACTCGCCGTGTGACCAATTCAGTCGT CTCTTCATGACCAAGATGTTCCTCATTGCAGCCGTTATAATGGGTTTCGA TTATTTTTCCGATCGTATTTCATGTATTCATCCGAAGAAAACGGATCTAA CGAAAGAGTTTATACATGCTGCATGCTGGATATCAGGCTTCTATGTCTAC AAAGAAATGAGGGACCGTCCCAGAGAGAGCGGTTATTATGGAATCCCATA CAAAATTGACCACGATGGTATAGACACTCAAACACAACAACTTTGTCTTA CCAACAATGTTAAAGTATTTCGTCCAGAATGTCAATCCATGACTCGAATC TATTATCTCCAGTATCAGTGGATGCCATTTTATATTGGTGCACTGGGTGT CCTGTATTATCTCCCTTATATACTGTTCAGGATTATCAACGTAGATTTGA TCAGTTTGAAATCCGTCTTAAAATCAGTCACCAGTGATGCAGACCATATC GTTCGAAATTACTTCAACTATAAAATCAATTCGATCAGTAAATTACGAAT GCGAGTGGTCCTGAATTTATTCGTCAAATGTCTTTACATTGTTGTCAATT tgtttggtttttatttcactGATTATTTACTGCATGGTAATTATAGAAGT TATGGGACGGAATATGTGCGATGGGCACGTTCAGATTCGGCTCGAAGTCA TTTGCCCATCAAGTTTAGAAAAGGACCTAAGCCAGGTAACCATCTTCTCC CAACCATGGGTTATTGTGAAGTCGAAGAAGCCTCCAAAGACCAGTTAACA GTTCACCATAACAGCTATGTATTCCTATGTGAAATCTCCACAAATATCCT ATACCAATACGTCTTGGTAGTCCTCTGGTTCCTCTTCATCATCAGCATAT GTATCTCCATCATTGGTCTACTTAGCGCTTTATTCGGACATTTGTTTAAG CTAACCTGTTATAGTCGAAGCTCACCAAAGAAGACCATCTATCGCGTCAT CACTCTCAGAGAAGCTGAATATctgaattttatcaaaactaagAATATGG TCATGTATGGTGAAGTGCTTAGGAAGCTGAAACAACAACGATCTGATTTG CAAGGGAAGATTATTGATGGGTTTGAAACAAccaTGTTCATCAGGAATGG GTTAGAAGTGAAAGCGTCAGCTCCAAACGCAGTCAATGGTTCGATTCGAT TGTGCTGATGAAAAATAACGAACAGGCTCTGGTGACGATTTTCGAAGAAA GAAGGGTCACTATTTAAAGGCGGGCACGGGGGGGGGGTGTTGTCACCAAA TCTTTTGGGATCACATCTGTATTTAAGATGTGTGTACACTTGTAcctgaa tttttggaaatttatacAGAAAGATGTCCTAAATTTATTGATTTAAAGTT TATGAATTAAATCTTTTTTGTACACTGCTGCATCGATATCTTCAAAGGGA AGTTATTTCTTTTGGACCCATGACTATTAATGAATGGCAGTGTCTGCACT TAAATATTTGATATTAATTGGAGACATTTGTgtacacatttttataagca atctAGATTTTGGCCTCAGGGTGGGAGTTGCTTAAAATTCTATCCCAATT TTTGAAGGACTTTCCATAACCAGTTCTCATATTATCATCAGTTACTGTAT CACACTTTCACTCGTACGTTCAGAGCCTGATGGCTCGGATAAGATGacga aaaatttgaagatatataccatattgtactctgtaccgtgtgataactat tacttatcactagccataactttcattaaggtgccaccgcagcaaaacga acaatagagttgaatttgcgttcaaaaggaatgatcttagccctacagta atttttgttaagagtgaacTCTCATcagagacaaaattctttcaaatgct aacaaatgtgtcacgggagtgatttacagtctacttagagtgacatctgT GCCTtgtcatacacgttttttataagaacaatttcataagaatacgaggc tgaaatttggccaaaacctaagaacaaattaagaagaatctgaacctcag atttcagaaattactgagaagtacatatatccattttaattaatattgat atttaaggctgaaaagctcatataaatttaagagggtccagccagaatca tatgacttgctggtttttcctgtaaaaagcgtatatatctgaagatactg ctcttcatatgttattttactaattttaacgtttagcaacataactgttc gaataccttgagtagagtaatatttttaacctatgaagagcgcttaataa ctacttgtggtataaaaagggaatttcccagagaagggaatttccttaga ttcatttaactctccagggataagaagctttaggcttcctccggtggcaa ttataaaaagttctgaaattgcgggataaaaaatatttggatGATTTTAG GGCTAAAGTACTAAGCTAATTTTTAAAGCTAAttgcttttaaaaaatttg agggCTTTAAGCACTTAAGCAAGACTAATTTTGTAATTTCTCCAAGAAAG agataacatttttcttttctcattgtCTTTTAACTCTTTTGTGAGATttt ctttgtcaaaatttgtaaat Run BLAST on NCBI transcript from alignment at scaffold_495:177049..183991- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069172 ID=TCONS_00069172|Name=TCONS_00069172|organism=Clytia hemisphaerica|type=transcript|length=6943bp|location=Sequence derived from alignment at scaffold_495:177049..183991- (Clytia hemisphaerica) ACTTATTCTTTAACTATTAAACTTTCTTTTTCTAGATTTGTGCAGTTTCC
CAGATTTCTCAAAAGGATCTGCAGTTGCAACGATTACTAACTGACATCTA
TATACCAAACCCAAAAAGCAAACTTATTCGAGGAAGAAACCAATTCAATC
AGTTAACTGTTAAAACATGGTCGTGGTACGTTCCCTGAAAGATATTTTGG
CACTCAAAATCAAAGCACGTCATGACTCGCCGTGTGACCAATTCAGTCGT
CTCTTCATGACCAAGATGTTCCTCATTGCAGCCGTTATAATGGGTTTCGA
TTATTTTTCCGATCGTATTTCATGTATTCATCCGAAGAAAACGGATCTAA
CGAAAGAGTTTATACATGCTGCATGCTGGATATCAGGCTTCTATGTGTAA
GTTTTATTGATGTTGATGTTTCGTTCAAGCCTGATACAATTTTTTTAGTA
AGAGCATTCAAAATTTTTTGAGCCTTCGGATGTTTTTAACTATTTGAGTA
TTAAGCCTAAAAATGCTCTTAACATGATCTTAATTTCACCATTTTGTGAG
TATGTTGGTCCATTCTCCTTGGAAATTGAGTTTCTTAGAGTTCTCGTACT
CGTCTAACTTAGGCCCGGCACGAAAAACATTATAATTCGCCGGTCTAAAT
ATTCGATTCGCTGCCTCAAGTATATATTCACGCCAATTAATACACTACAC
TGGGCTTGCTAAGACTTTGCCGTTCTACATCATAGAACGCTTTGATAACG
ATTCGCTAGTCTATCAAAAACAAAACAAAACCCCTGTATACTAAGACTTT
TTATTGTTTACAATATGCTTTTCAATATTTTCTCTTCAGCTACAAAGAAA
TGAGGGACCGTCCCAGAGAGAGCGGTTATTATGGAATCCCATACAAAATT
GACCACGATGGTATAGACACTCAAACACAACAACTTTGTCTTACCAACAA
TGTTAAAGTATTTCGTCCAGAATGTCAATCCATGACTCGAATCTATTATC
TCCAGTATCAGTGGATGCCATTTTATATTGGTGCACTGGGTGTCCTGTAT
TATCTCCCTTATATACTGTTCAGGTGTGTAATATTTTACATGGTCGAATA
TTTGAAACTATGTACCTCTTTTTATCGTCAATTACAAATCTTAAAGGACA
CACCATATGACGTATCTTCTACCAAACAAAAGAAAAAGAAAAACTCCCTC
ACCCTCCACAAATTTTCTCCCGCCGTGCACAAATTTTCTCCCAAACTATT
TTGAGTGTATATTTGCTGATCTGAACGTCACCTCACAAGAAAGCAATCTC
TGTTGGAATCTACTCCTCTTTAATACAAAATGAAGCCATTCTTTTGGTTA
GAAGTGACGTAAAACTTGAATTTAACCAATAGAATGGTTTCATTTAGCTT
CGGAGCGGAACGGAACCGTAGCGTGTCAACGTAGTCTAAGACCATGTTCA
CACATTACTGTTCCGTTTCGCTCCGGTATGATTTTTGTTATGGATCGAAT
GTGTTCACATTGGTTTCGGAACGTTTCGAAGTAAGAAAACGAAGCAGTTT
CGTTCCGATGAATAGAGTGGAGTGAAACCGTTTTGCTTTGTAACGTCTCC
TTTTTTGACGTTTCGAACTTTGACGTTCACACTTGTTTCGGAACTGTTTC
GTTTCGGAACGGAACGGAACCGTAACGTCTGAACATGGTCTAAATCATTC
CATTCTTTTCTTTCTTTATTTTACAGGATTATCAACGTAGATTTGATCAG
TTTGAAATCCGTCTTAAAATCAGTCACCAGTGATGCAGACCATATCGTTC
GAAATTACTTCAACTATAAAATCAATTCGATCAGTAAATTACGAATGCGA
GTGGTCCTGAATTTATTCGTCAAATGTCTTTACATTGTTGTCAATTTGTT
TGGTTTTTATTTCACTGATTATTTACTGCATGGTAATTATAGAAGTTATG
GGACGGAATATGTGCGATGGGCACGTTCAGATTCGGCTCGAAGTCATTTG
CCCATCAAGTTTAGAAAAGGACCTAAGCCAGGTAAAGAATATTCTTCTTA
TATTGAATTGTATTTCTATACCGCATAGAATGAAAAAATTTATTTGTCAA
GTAGATTTACCGGGTTTTTAATAGTCTACTTTGTTTATTTGTTCCGTAAC
CTTTCCTGGTTCTTATTGATTTTTTTACATTTCCTGATTCGTTCCTTCCT
TCCTTCCTTCCTTCATTTATTCATTTCTGTATTTATTCTTTCCTTCATTC
ATTTATTCCTTCATTTATTCATTCATTAAAAAACAAACATTTTAACGAAA
GTAACCTCATTCTTCACCCTCTCTTCCCAGGTAACCATCTTCTCCCAACC
ATGGGTTATTGTGAAGTCGAAGAAGCCTCCAAAGACCAGTTAACAGTTCA
CCATAACAGCTATGTATTCCTATGTGAAATCTCCACAAATATCCTATACC
AATACGTCTTGGTAGTCCTCTGGTTCCTCTTCATCATCAGCATATGTATC
TCCATCATTGGTCTACTTAGCGCTTTATTCGGACATTTGTTTAAGCTAAC
CTGTTATAGTCGAAGCTCACCAAAGAAGACCATCTATCGCGTCATCACTC
TCAGAGAAGCTGAATATCTGAATTTTATCAAAACTAAGAATATGGTCATG
TATGGTGAAGTGCTTAGGAAGCTGAAACAACAACGATCTGATTTGCAAGG
GAAGATTATTGATGGGTTTGAAACAAGTAATGGATTTGTTTAATAGAATT
TTCTAAGAAGGGACTCGACGGAAAATAAACAAGAGTAGAGCAGTAGAAAA
ATGAAGAGATTGGGAATAGAAGAATTCTGTAGTAATTGACGAGCCAACCA
CGCACACACACACACTTTGATAATAGGAAGTTGAAGGTATATGCGAGGAA
GAAATTAGGACACTTCCAGGAGTAAGCAAGAACACCACCAGGTGGGATCA
AGGACACCTCCAGGTATAAGCCTGGACACCTCCAGGTGGAGGCCTGTTTA
CATTCAGGAGGAAATAGAACACCTCCGTGAGGAAGCTATGATATCGTCTG
GAGGAAGCTATGAAGCCCTCTGGAGATAACCAGTACACCTCCTGGGGAAA
CCAGAAGGAGCCAGAAGGAAGCACTCGATCATACACCCTGATACATATAC
ATACATTTCGTTGTGAACACCTTTTAGAAGATAAAAAGATAGCAATTTCA
CCAAATAAAGACATAAAATTATACGACTGGCAAACTCGAGAACCATTGTA
GAAAACAAGTTGTAGAAATGCATTTTTAAAACTTCTATATTAGAAGGTTG
ACAATATATAATGATGGTGCAAGGTAGAAAAATACAAGAGAACGCTTTCG
AGTTAAGTTTTGCTAAATGATAAACTCATGGATGAATAAATTTTGTATGA
AATATTAATTTTCTTTTTTTAGCCATGTTCATCAGGAATGGGTTAGAAGT
GAAAGCGTCAGCTCCAAACGCAGTCAATGGTTCGATTCGATTGTGCTGAT
GAAAAATAACGTACAGGCTCTGGTGACGCTTTTCGAAGAAAGAAGGGTCA
CTATTTAAAGGCGGGCACGGGGGGATGTTGCCACCAAATCTTTTGGGATC
ACATCTGTATTTAAGATGTGTGTACACTTGTACCTGAATTTTTGGAAATT
TATACAGAAAGATGTCCTAAATTTATTGATTTAAAGTTTATGAATTAAAT
CTTTTTTGTACACTGCTGCATCGATATCTTCAAAGGGAAGTTATTTCTTT
TGGACCCATGACTATTAATGAATGGCAGTGTCTGCACTTAAATATTTGAT
ATTAATTGGAGACATTTGTGTACACATTTTTATAAGCAATCTAGATTTTG
GCCTCAGGGTGGGAGTTGCTTAAAATTCTATCCCAATTTTTGAAGGACTT
TCCATAACCAGTTCTCATATTATCATCAGTTACTGTATCACACTTTCACT
CGTACGTTCAGAGCCTGATGGCTCGGATAAGATGACGAAAAATTTGAAGA
TATATACCATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGACACCTCCAGGTATA
AGCCTGGACACCTCCAGGTGGAGGCCTGTTTACATTCAGGAGGAAATAGA
ACACCTCCGTGAGGAAGCTATGATATCGTCTGGAGGAAGCTATGAAGCCC
TCTGGAGATAACCAGTACACCTCCTGGGGAAACCAGAAGGAGCCAGAAGG
AAGCACTCGATCATACACCCTGATACATATACATACATTTCGTTGTGAAC
ACCTTTTAGAAGATAAAAAGATAGCAATTTCACCAAATAAAGACATAAAA
TTATACGACTGGCAAACTCGAGAACCATTGTAGAAAACAAGTTGTAGAAA
TGCATTTTTAAAACTTCTATATTAGAAGGTTGACAATATATAATGATGGT
GCAAGGTAGAAAAATACAAGAGAACGCTTTCGAGTTAAGTTTTGCTAAAT
GATAAACTCATGGATGAATAAATTTTGTATGAAATATTAATTTTCTTTTT
TTAGCCATGTTCATCAGGAATGGGTTAGAAGTGAAAGCGTCAGCTCCAAA
CGCAGTCAATGGTTCGATTCGATTGTGCTGATGAAAAATAACGAACAGGC
TCTGGTGACGATTTTCGAAGAAAGAAGGGTCACTATTTAAAGGCGGGCAC
GGGGGGGGGGTGTTGTCACCAAATCTTTTGGGATCACATCTGTATTTAAG
ATGTGTGTACACTTGTACCTGAATTTTTGGAAATTTATACAGAAAGATGT
CCTAAATTTATTGATTTAAAGTTTATGAATTAAATCTTTTTTGTACACTG
CTGCATCGATATCTTCAAAGGGAAGTTATTTCTTTTGGACCCATGACTAT
TAATGAATGGCAGTGTCTGCACTTAAATATTTGATATTAATTGGAGACAT
TTGTGTACACATTTTTATAAGCAATCTAGATTTTGGCCTCAGGGTGGGAG
TTGCTTAAAATTCTATCCCAATTTTTGAAGGACTTTCCATAACCAGTTCT
CATATTATCATCAGTTACTGTATCACACTTTCACTCGTACGTTCAGAGCC
TGATGGCTCGGATAAGATGACGAAAAATTTGAAGATATATACCATATTGT
ACTCTGTACCGTGTGATAACTATTACTTATCACTAGCCATAACTTTCATT
AAGGTGCCACCGCAGCAAAACGAACAATAGAGTTGAATTTGCGTTCAAAA
GGAATGATCTTAGCCCTACAGTAATTTTTGTTAAGAGTGAACTCTCATCA
GAGACAAAATTCTTTCAAATGCTAACAAATGTGTCACGGGAGTGATTTAC
AGTCTACTTAGAGTGACATCTGTGCCTTGTCATACACGTTTTTTATAAGA
ACAATTTCATAAGAATACGAGGCTGAAATTTGGCCAAAACCTAAGAACAA
ATTAAGAAGAATCTGAACCTCAGATTTCAGAAATTACTGAGAAGTACATA
TATCCATTTTAATTAATATTGATATTTAAGGCTGAAAAGCTCATATAAAT
TTAAGAGGGTCCAGCCAGAATCATATGACTTGCTGGTTTTTCCTGTAAAA
AGCGTATATATCTGAAGATACTGCTCTTCATATGTTATTTTACTAATTTT
AACGTTTAGCAACATAACTGTTCGAATACCTTGAGTAGAGTAATATTTTT
AACCTATGAAGAGCGCTTAATAACTACTTGTGGTATAAAAAGGGAATTTC
CCAGAGAAGGGAATTTCCTTAGATTCATTTAACTCTCCAGGGATAAGAAG
CTTTAGGCTTCCTCCGGTGGCAATTATAAAAAGTTCTGAAATTGCGGGAT
AAAAAATATTTGGATGATTTTAGGGCTAAAGTACTAAGCTAATTTTTAAA
GCTAATTGCTTTTAAAAAATTTGAGGGCTTTAAGCACTTAAGCAAGACTA
ATTTTGTAATTTCTCCAAGAAAGAGATAACATTTTTCTTTTCTCATTGTC
TTTTAACTCTTTTGTGAGATTTTCTTTGTCAAAATTTGTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069172-exon-scaffold_495-1575043694:183596..183991 | TCONS_00069172-exon-scaffold_495-1575043694:183596..183991 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1575043694:182919..183152 | TCONS_00069172-exon-scaffold_495-1575043694:182919..183152 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1575043694:181961..182265 | TCONS_00069172-exon-scaffold_495-1575043694:181961..182265 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1575043694:181266..181661 | TCONS_00069172-exon-scaffold_495-1575043694:181266..181661 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1575043694:177049..178537 | TCONS_00069172-exon-scaffold_495-1575043694:177049..178537 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1510915933:183596..183991 | TCONS_00069172-exon-scaffold_495-1510915933:183596..183991 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1510915933:182919..183152 | TCONS_00069172-exon-scaffold_495-1510915933:182919..183152 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1510915933:181961..182265 | TCONS_00069172-exon-scaffold_495-1510915933:181961..182265 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1510915933:181266..181661 | TCONS_00069172-exon-scaffold_495-1510915933:181266..181661 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1510915933:177049..178537 | TCONS_00069172-exon-scaffold_495-1510915933:177049..178537 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1491911889:183596..183991 | TCONS_00069172-exon-scaffold_495-1491911889:183596..183991 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1491911889:182919..183152 | TCONS_00069172-exon-scaffold_495-1491911889:182919..183152 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1491911889:181961..182265 | TCONS_00069172-exon-scaffold_495-1491911889:181961..182265 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1491911889:181266..181661 | TCONS_00069172-exon-scaffold_495-1491911889:181266..181661 | Clytia hemisphaerica | exon |
TCONS_00069172-exon-scaffold_495-1491911889:177049..178537 | TCONS_00069172-exon-scaffold_495-1491911889:177049..178537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_495 | supercontig | scaffold_495:177049..183991 - |
Blast
The following BLAST results are available for this feature:
|