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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069171 ID=TCONS_00069171|Name=TCONS_00069171|organism=Clytia hemisphaerica|type=transcript|length=1958bp
ACACCTCCAGGTATAAGCCTGGACACCTCCAGGTGGAGGCCTGTTTACAT
TCAGGAGGAAATAGAACACCTCCGTGAGGAAGCTATGATATCGTCTGGAG
GAAGCTATGAAGCCCTCTGGAGATAACCAGTACACCTCCTGGGGAAACCA
GAAGGAGCCAGAAGGAAGCACTCGATCATACACCCTGATACATATACATA
CATTTCGTTGTGAACACCTTTTAGAAGATAAAAAGATAGCAATTTCACCA
AATAAAGACATAAAATTATACGACTGGCAAACTCGAGAACCATTGTAGAA
AACAAGTTGTAGAAATGCATTTTTAAAACTTCTATATTAGAAGGTTGACA
ATATATAATGATGGTGCAAGGTAGAAAAATACAAGAGAACGCTTTCGAGT
TAAGTTTTGCTAAATGATAAACTCATGGATGAATAAATTTTGTATGaaat
attaattttctttttttagccaTGTTCATCAGGAATGGGTTAGAAGTGAA
AGCGTCAGCTCCAAACGCAGTCAATGGTTCGATTCGATTGTGCTGATGAA
AAATAACGAACAGGCTCTGGTGACGATTTTCGAAGAAAGAAGGGTCACTA
TTTAAAGGCGGGCACGGGGGGGGGGTGTTGTCACCAAATCTTTTGGGATC
ACATCTGTATTTAAGATGTGTGTACACTTGTAcctgaatttttggaaatt
tatacAGAAAGATGTCCTAAATTTATTGATTTAAAGTTTATGAATTAAAT
CTTTTTTGTACACTGCTGCATCGATATCTTCAAAGGGAAGTTATTTCTTT
TGGACCCATGACTATTAATGAATGGCAGTGTCTGCACTTAAATATTTGAT
ATTAATTGGAGACATTTGTgtacacatttttataagcaatctAGATTTTG
GCCTCAGGGTGGGAGTTGCTTAAAATTCTATCCCAATTTTTGAAGGACTT
TCCATAACCAGTTCTCATATTATCATCAGTTACTGTATCACACTTTCACT
CGTACGTTCAGAGCCTGATGGCTCGGATAAGATGacgaaaaatttgaaga
tatataccatattgtactctgtaccgtgtgataactattacttatcacta
gccataactttcattaaggtgccaccgcagcaaaacgaacaatagagttg
aatttgcgttcaaaaggaatgatcttagccctacagtaatttttgttaag
agtgaacTCTCATcagagacaaaattctttcaaatgctaacaaatgtgtc
acgggagtgatttacagtctacttagagtgacatctgTGCCTtgtcatac
acgttttttataagaacaatttcataagaatacgaggctgaaatttggcc
aaaacctaagaacaaattaagaagaatctgaacctcagatttcagaaatt
actgagaagtacatatatccattttaattaatattgatatttaaggctga
aaagctcatataaatttaagagggtccagccagaatcatatgacttgctg
gtttttcctgtaaaaagcgtatatatctgaagatactgctcttcatatgt
tattttactaattttaacgtttagcaacataactgttcgaataccttgag
tagagtaatatttttaacctatgaagagcgcttaataactacttgtggta
taaaaagggaatttcccagagaagggaatttccttagattcatttaactc
tccagggataagaagctttaggcttcctccggtggcaattataaaaagtt
ctgaaattgcgggataaaaaatatttggatGATTTTAGGGCTAAAGTACT
AAGCTAATTTTTAAAGCTAAttgcttttaaaaaatttgagggCTTTAAGC
ACTTAAGCAAGACTAATTTTGTAATTTCTCCAAGAAAGagataacatttt
tcttttctcattgtCTTTTAACTCTTTTGTGAGATtttctttgtcaaaat
ttgtaaat Run BLAST on NCBI transcript from alignment at scaffold_495:177049..179006- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069171 ID=TCONS_00069171|Name=TCONS_00069171|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at scaffold_495:177049..179006- (Clytia hemisphaerica)
ACACCTCCAGGTATAAGCCTGGACACCTCCAGGTGGAGGCCTGTTTACAT
TCAGGAGGAAATAGAACACCTCCGTGAGGAAGCTATGATATCGTCTGGAG
GAAGCTATGAAGCCCTCTGGAGATAACCAGTACACCTCCTGGGGAAACCA
GAAGGAGCCAGAAGGAAGCACTCGATCATACACCCTGATACATATACATA
CATTTCGTTGTGAACACCTTTTAGAAGATAAAAAGATAGCAATTTCACCA
AATAAAGACATAAAATTATACGACTGGCAAACTCGAGAACCATTGTAGAA
AACAAGTTGTAGAAATGCATTTTTAAAACTTCTATATTAGAAGGTTGACA
ATATATAATGATGGTGCAAGGTAGAAAAATACAAGAGAACGCTTTCGAGT
TAAGTTTTGCTAAATGATAAACTCATGGATGAATAAATTTTGTATGAAAT
ATTAATTTTCTTTTTTTAGCCATGTTCATCAGGAATGGGTTAGAAGTGAA
AGCGTCAGCTCCAAACGCAGTCAATGGTTCGATTCGATTGTGCTGATGAA
AAATAACGAACAGGCTCTGGTGACGATTTTCGAAGAAAGAAGGGTCACTA
TTTAAAGGCGGGCACGGGGGGGGGGTGTTGTCACCAAATCTTTTGGGATC
ACATCTGTATTTAAGATGTGTGTACACTTGTACCTGAATTTTTGGAAATT
TATACAGAAAGATGTCCTAAATTTATTGATTTAAAGTTTATGAATTAAAT
CTTTTTTGTACACTGCTGCATCGATATCTTCAAAGGGAAGTTATTTCTTT
TGGACCCATGACTATTAATGAATGGCAGTGTCTGCACTTAAATATTTGAT
ATTAATTGGAGACATTTGTGTACACATTTTTATAAGCAATCTAGATTTTG
GCCTCAGGGTGGGAGTTGCTTAAAATTCTATCCCAATTTTTGAAGGACTT
TCCATAACCAGTTCTCATATTATCATCAGTTACTGTATCACACTTTCACT
CGTACGTTCAGAGCCTGATGGCTCGGATAAGATGACGAAAAATTTGAAGA
TATATACCATATTGTACTCTGTACCGTGTGATAACTATTACTTATCACTA
GCCATAACTTTCATTAAGGTGCCACCGCAGCAAAACGAACAATAGAGTTG
AATTTGCGTTCAAAAGGAATGATCTTAGCCCTACAGTAATTTTTGTTAAG
AGTGAACTCTCATCAGAGACAAAATTCTTTCAAATGCTAACAAATGTGTC
ACGGGAGTGATTTACAGTCTACTTAGAGTGACATCTGTGCCTTGTCATAC
ACGTTTTTTATAAGAACAATTTCATAAGAATACGAGGCTGAAATTTGGCC
AAAACCTAAGAACAAATTAAGAAGAATCTGAACCTCAGATTTCAGAAATT
ACTGAGAAGTACATATATCCATTTTAATTAATATTGATATTTAAGGCTGA
AAAGCTCATATAAATTTAAGAGGGTCCAGCCAGAATCATATGACTTGCTG
GTTTTTCCTGTAAAAAGCGTATATATCTGAAGATACTGCTCTTCATATGT
TATTTTACTAATTTTAACGTTTAGCAACATAACTGTTCGAATACCTTGAG
TAGAGTAATATTTTTAACCTATGAAGAGCGCTTAATAACTACTTGTGGTA
TAAAAAGGGAATTTCCCAGAGAAGGGAATTTCCTTAGATTCATTTAACTC
TCCAGGGATAAGAAGCTTTAGGCTTCCTCCGGTGGCAATTATAAAAAGTT
CTGAAATTGCGGGATAAAAAATATTTGGATGATTTTAGGGCTAAAGTACT
AAGCTAATTTTTAAAGCTAATTGCTTTTAAAAAATTTGAGGGCTTTAAGC
ACTTAAGCAAGACTAATTTTGTAATTTCTCCAAGAAAGAGATAACATTTT
TCTTTTCTCATTGTCTTTTAACTCTTTTGTGAGATTTTCTTTGTCAAAAT
TTGTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069171-exon-scaffold_495-1575043694:177049..179006 | TCONS_00069171-exon-scaffold_495-1575043694:177049..179006 | Clytia hemisphaerica | exon |
| TCONS_00069171-exon-scaffold_495-1510915933:177049..179006 | TCONS_00069171-exon-scaffold_495-1510915933:177049..179006 | Clytia hemisphaerica | exon |
| TCONS_00069171-exon-scaffold_495-1491911889:177049..179006 | TCONS_00069171-exon-scaffold_495-1491911889:177049..179006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_495 | supercontig | scaffold_495:177049..179006 - |
Blast
The following BLAST results are available for this feature:
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