TCONS_00069162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069162
Unique NameTCONS_00069162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069162 ID=TCONS_00069162|Name=TCONS_00069162|organism=Clytia hemisphaerica|type=transcript|length=2119bp
ACCAGTTCGAGAAGTTCGCTTAGTTCGAGTTTCTAATTTATAAATTAAGC
GTgtaattcaacaaaatcttctAGAAAGAAATTAGAACGAAAAATACGAC
GTAAATGTATTTCTGGGTGTCATAAACAATCATGGCCGCATCTGGAGCTT
ATTGCGATTGTTCGACTGAAGCGTTTGATCAAAAATAagtttttcgaaag
aaaattgataaCCAACTTAACACGTGGATTTGTTTGCAAACGTTGCATTT
CAGTAGTAGAAGGCATACGGTACAGTGATAACAGAAAGATTGTTAGTTTA
GGCGAGTTGAATGATGATATTGTTAACGACATCAAATATTTACGTAAACC
ACTGACATTGCCAGAGCTAATACAATATAATCCAACTACTTGGTTAAGCG
CTAGACCAAAATCTGTACAGGAGTACACCAAATCGACATGCGGACTTCAT
CCAGGAAGTAGCTTGTTAAAGGTAACAAAAGCTGCCTTCCAAATCGAATT
GATGTACGGTGCACGCGACAAACGCCTTGTGTTGCCTTTGTCATTTCTCA
CAAATCTGGTGTCCACTCAGATGACGCATTCAAAAATGTTGTGTTCAATG
TTTGGAAATTTGACACCCGGTGGAGGTTACACCCATATGGCTACATGGGT
CAACAAGGCCACGCAGGCCGTGCCAATCATACCGGATGTTGACCTAACAT
ATGCTGCGGACAACCTTCAAATCATTGGCAAAAATTGGCATCTAGAAGCC
AACTCATCTCAGCCGGTCAGTGTCATCACAAATCACATTTATAACATACT
TCGTGCTGGCACCAATCTTCAGTTTAACGACACATACCATCCGCGGGTCT
GGTTCCCCCAAAAATCGGACGTAAAGGAAATTTCAATGACGCCAGACGAG
GAGAGTGTGTATAGAGCACTGCGTTTGGAATTTATTGAAACAAGATTGAA
ACGATTTaacgaaaacaaagaaacaaacGAATCGGTTGAAAATTGGGCTG
GTCTGATCAAACGCTCACGCACAGTCAAGTACTGCACGGCATGTTATTGT
GAAAATGACAAAGATTTCTTGgTTTGCAGATACTGTTCAAGTCCCCTGGA
AGGCGTCCAAATTTCCCTCGATGCAACTGGAGAAAAGATCACTCTAGGAG
ATTACTTCCCCAACATAGAGAAACCCGTTGACGCTAAACCTGATATTTGT
GTCTGTGACCCAACATTCACAAATCCAAATTCGTATGTTTCTGTGTCGGA
ATTATTGCGAGAGATTGGTCGTTGGAGCCCCCTTTTAGGGCACAGCTGGA
AAAAAAATGCCAGTGAGAATAAAGCTCAGAAATCCTAAACTGCACTATCC
TCTTCTGTTTCCAGTAAGTACAAACGAAACCCGTTGGGTCACGGATATAT
CGGATATACAAGATGAATTATTTTAGTACCCCCTGGTTATGGTCAAATGG
TCTATCAAATTATTTCCTTCAAACTGACGAGGCAAGCTAGATAAAGATTA
AATATTTCGCTTTGTTATGAGAAGTAAAACAATGTAACCATTACAAATCA
GTTAGAAtgcaaaaattcaacaaaagaaTACCTTTCCAGACTTTTGCTCT
TGTCAAGTtaactttcaacaaatttcccgTCATCATTTAAGCAGCCACTC
ATACAACTCTCACAcagtaaaatgtaaaaatttcttCATGATGTACTTAC
ATAATTTTTATGCATATCCACTAAAGAAATGGACTTCGTGTTTTCCTTTG
TTAAACGTAATAAAATACTTACCATTGTTTTAAGAATGAGTTCTCGTAAT
CACTTGGGAATATAATTACTACTTGCATTGTGTTTACGTCATATGTCTCG
TCTCTTCAATTTTTTCTACTGTGTAGGAGTGCCAAACATGGGATTTCTAT
AAGGAAATTTGAGAAACTTCATCGCAGAAAtagtttcaatattttgccCA
ATTTTTCGACTGCAAGTTGTGGGGTAGCAGAAATATATATCATTGTGTTC
CTTATAAGAGCCGCTAAACGAATAtcgtatttttgttttcaccacGACGT
GTTATTGAACGTTTTAAGTACTTTTTGTTGCAagcctttgatctttcttt
tttttcttttgtttagcgt
Run BLAST on NCBI

protein sequence of TCONS_00069162-protein

>TCONS_00069162-protein ID=TCONS_00069162-protein|Name=TCONS_00069162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MYGARDKRLVLPLSFLTNLVSTQMTHSKMLCSMFGNLTPGGGYTHMATWV
NKATQAVPIIPDVDLTYAADNLQIIGKNWHLEANSSQPVSVITNHIYNIL
RAGTNLQFNDTYHPRVWFPQKSDVKEISMTPDEESVYRALRLEFIETRLK
RFNENKETNESVENWAGLIKRSRTVKYCTACYCENDKDFLVCRYCSSPLE
GVQISLDATGEKITLGDYFPNIEKPVDAKPDICVCDPTFTNPNSYVSVSE
LLREIGRWSPLLGHSWKKNASENKAQKS
Run BLAST on NCBI

transcript from alignment at scaffold_495:10877..13313-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069162 ID=TCONS_00069162|Name=TCONS_00069162|organism=Clytia hemisphaerica|type=transcript|length=2437bp|location=Sequence derived from alignment at scaffold_495:10877..13313- (Clytia hemisphaerica)
ACCAGTTCGAGAAGTTCGCTTAGTTCGAGTTTCTAATTTATAAATTAAGC
GTGTAATTCAACAAAATCTTCTAGAAAGAAATTAGAACGAAAAATACGAC
GTAAATGTATTTCTGGGTGTCATAAACAATCATGGCCGCATCTGGAGCTT
ATTGCGATTGTTCGACTGAAGCGTTTGATCAAAAATAAGTTTTTCGAAAG
AAAATTGATAACCAACTTAACACGTGGATTTGTTTGCAAACGTTGCATTT
CAGTAGTAGAAGGCATACGGTACAGTGATAACAGAAAGATTGTTAGTTTA
GGCGAGTTGAATGATGATATTGTTAACGACATCAAATATTTACGTAAACC
ACTGACATTGCCAGAGCTAATACAATATAATCCAACTACTTGGTTAAGCG
CTAGACCAAAATCTGTACAGGAGTACACCAAATCGACATGCGGACTTCAT
CCAGGAAGTAGCTTGTTAAAGGTAACAAAAGCTGCCTTCCAAATCGAATT
GATGTACGGTGCACGCGACAAACGCCTTGTGTTGCCTTTGTCATTTCTCA
CAAATCTGGTGTCCACTCAGATGACGCATTCAAAAATGTTGTGTTCAATG
TTTGGAAATTTGACACCCGGTGGAGGTTACACCCATATGGCTACATGGGT
CAACAAGGCCACGCAGGCCGTGCCAATCATACCGGATGTTGACCTAACAT
ATGCTGCGGACAACCTTCAAATCATTGGCAAAAATTGGCATCTAGAAGCC
AACTCATCTCAGCCGGTCAGTGTCATCACAAATCACATTTATAACATACT
TCGTGCTGGCACCAATCTTCAGTTTAACGACACATACCATCCGCGGGTCT
GGTTCCCCCAAAAATCGGACGTAAAGGAAATTTCAATGACGCCAGACGAG
GAGAGTGTGTATAGAGCACTGCGTTTGGAATTTATTGAAACAAGATTGAA
ACGATTTAACGAAAACAAAGAAACAAACGAATCGGTTGAAAATTGGGCTG
GTCTGATCAAACGCTCACGCACAGTCAAGTACTGCACGGCATGTTATTGT
GAAAATGACAAAGATTTCTTGGTTTGTAATAATTTTCTCTGTATATTATT
TTAGTTTGTAAATTGTGTAAGATTACTGTAATCAGATTAACTTTAGGAAG
TTAATTTTACAAGCCTAAAATTTTGGGAAATTTGGTGTAACTTTTTTTAT
TAGGTGTCGTGNAACTTTAGAAAGTTAATTTTACAAGCCTAAAATTTTGG
GAAATTGGGTGTAACTTTTTTCATTAGGTGTCGTGAAGAATGTCGCTTGA
ATTTAACTTACTGCTCATAATTCTATAGCCCTGTTCTACTATTTTTTATA
GGGTGGAGTTTATATTTAATGTAATAATAAAAATTTTAGGTTTGCAGATA
CTGTTCAAGTCCCCTGGAAGGCGTCCAAATTTCCCTCGATGCAACTGGAG
AAAAGATCACTCTAGGAGATTACTTCCCCAACATAGAGAAACCCGTTGAC
GCTAAACCTGATATTTGTGTCTGTGACCCAACATTCACAAATCCAAATTC
GTATGTTTCTGTGTCGGAATTATTGCGAGAGATTGGTCGTTGGAGCCCCC
TTTTAGGGCACAGCTGGAAAAAAAATGCCAGTGAGAATAAAGCTCAGAAA
TCCTAAACTGCACTATCCTCTTCTGTTTCCAGTAAGTACAAACGAAACCC
GTTGGGTCACGGATATATCGGATATACAAGATGAATTATTTTAGTACCCC
CTGGTTATGGTCAAATGGTCTATCAAATTATTTCCTTCAAACTGACGAGG
CAAGCTAGATAAAGATTAAATATTTCGCTTTGTTATGAGAAGTAAAACAA
TGTAACCATTACAAATCAGTTAGAATGCAAAAATTCAACAAAAGAATACC
TTTCCAGACTTTTGCTCTTGTCAAGTTAACTTTCAACAAATTTCCCGTCA
TCATTTAAGCAGCCACTCATACAACTCTCACACAGTAAAATGTAAAAATT
TCTTCATGATGTACTTACATAATTTTTATGCATATCCACTAAAGAAATGG
ACTTCGTGTTTTCCTTTGTTAAACGTAATAAAATACTTACCATTGTTTTA
AGAATGAGTTCTCGTAATCACTTGGGAATATAATTACTACTTGCATTGTG
TTTACGTCATATGTCTCGTCTCTTCAATTTTTTCTACTGTGTAGGAGTGC
CAAACATGGGATTTCTATAAGGAAATTTGAGAAACTTCATCGCAGAAATA
GTTTCAATATTTTGCCCAATTTTTCGACTGCAAGTTGTGGGGTAGCAGAA
ATATATATCATTGTGTTCCTTATAAGAGCCGCTAAACGAATATCGTATTT
TTGTTTTCACCACGACGTGTTATTGAACGTTTTAAGTACTTTTTGTTGCA
AGCCTTTGATCTTTCTTTTTTTTCTTTTGTTTAGCGT

Coding sequence (CDS) from alignment at scaffold_495:10877..13313-

>TCONS_00069162 ID=TCONS_00069162|Name=TCONS_00069162|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_495:10877..13313- (Clytia hemisphaerica)
GTTTGCAGATACTGTTCAAGTCCCCTGGAAGGCGTCCAAATTTCCCTCGA
TGCAACTGGAGAAAAGATCACTCTAGGAGATTACTTCCCCAACATAGAGA
AACCCGTTGACGCTAAACCTGATATTTGTGTCTGTGACCCAACATTCACA
AATCCAAATTCGTATGTTTCTGTGTCGGAATTATTGCGAGAGATTGGTCG
TTGGAGCCCCCTTTTAGGGCACAGCTGGAAAAAAAATGCCAGTGAGAATA
AAGCTCAGAAATCCTAAATGTACGGTGCACGCGACAAACGCCTTGTGTTG
CCTTTGTCATTTCTCACAAATCTGGTGTCCACTCAGATGACGCATTCAAA
AATGTTGTGTTCAATGTTTGGAAATTTGACACCCGGTGGAGGTTACACCC
ATATGGCTACATGGGTCAACAAGGCCACGCAGGCCGTGCCAATCATACCG
GATGTTGACCTAACATATGCTGCGGACAACCTTCAAATCATTGGCAAAAA
TTGGCATCTAGAAGCCAACTCATCTCAGCCGGTCAGTGTCATCACAAATC
ACATTTATAACATACTTCGTGCTGGCACCAATCTTCAGTTTAACGACACA
TACCATCCGCGGGTCTGGTTCCCCCAAAAATCGGACGTAAAGGAAATTTC
AATGACGCCAGACGAGGAGAGTGTGTATAGAGCACTGCGTTTGGAATTTA
TTGAAACAAGATTGAAACGATTTAACGAAAACAAAGAAACAAACGAATCG
GTTGAAAATTGGGCTGGTCTGATCAAACGCTCACGCACAGTCAAGTACTG
CACGGCATGTTATTGTGAAAATGACAAAGATTTCTTGGTTTGCAGATACT
GTTCAAGTCCCCTGGAAGGCGTCCAAATTTCCCTCGATGCAACTGGAGAA
AAGATCACTCTAGGAGATTACTTCCCCAACATAGAGAAACCCGTTGACGC
TAAACCTGATATTTGTGTCTGTGACCCAACATTCACAAATCCAAATTCGT
ATGTTTCTGTGTCGGAATTATTGCGAGAGATTGGTCGTTGGAGCCCCCTT
TTAGGGCACAGCTGGAAAAAAAATGCCAGTGAGAATAAAGCTCAGAAATC
CTAAATGTACGGTGCACGCGACAAACGCCTTGTGTTGCCTTTGTCATTTC
TCACAAATCTGGTGTCCACTCAGATGACGCATTCAAAAATGTTGTGTTCA
ATGTTTGGAAATTTGACACCCGGTGGAGGTTACACCCATATGGCTACATG
GGTCAACAAGGCCACGCAGGCCGTGCCAATCATACCGGATGTTGACCTAA
CATATGCTGCGGACAACCTTCAAATCATTGGCAAAAATTGGCATCTAGAA
GCCAACTCATCTCAGCCGGTCAGTGTCATCACAAATCACATTTATAACAT
ACTTCGTGCTGGCACCAATCTTCAGTTTAACGACACATACCATCCGCGGG
TCTGGTTCCCCCAAAAATCGGACGTAAAGGAAATTTCAATGACGCCAGAC
GAGGAGAGTGTGTATAGAGCACTGCGTTTGGAATTTATTGAAACAAGATT
GAAACGATTTAACGAAAACAAAGAAACAAACGAATCGGTTGAAAATTGGG
CTGGTCTGATCAAACGCTCACGCACAGTCAAGTACTGCACGGCATGTTAT
TGTGAAAATGACAAAGATTTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043111XLOC_043111Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069162-proteinTCONS_00069162-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069162-exon-scaffold_495-1575043694:12243..13313TCONS_00069162-exon-scaffold_495-1575043694:12243..13313Clytia hemisphaericaexon
TCONS_00069162-exon-scaffold_495-1575043694:10877..11924TCONS_00069162-exon-scaffold_495-1575043694:10877..11924Clytia hemisphaericaexon
TCONS_00069162-exon-scaffold_495-1510915933:12243..13313TCONS_00069162-exon-scaffold_495-1510915933:12243..13313Clytia hemisphaericaexon
TCONS_00069162-exon-scaffold_495-1510915933:10877..11924TCONS_00069162-exon-scaffold_495-1510915933:10877..11924Clytia hemisphaericaexon
TCONS_00069162-exon-scaffold_495-1491911889:12243..13313TCONS_00069162-exon-scaffold_495-1491911889:12243..13313Clytia hemisphaericaexon
TCONS_00069162-exon-scaffold_495-1491911889:10877..11924TCONS_00069162-exon-scaffold_495-1491911889:10877..11924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_495supercontigscaffold_495:10877..13313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0754431	0.0498501	0.0536304	0.117608	0.60135	0.352054	0.413629	0.326558	0.236169	0.373972	0.18872	0.175817	0.35038	0.154504	0.0492132	0.0987593	0.0492292	0.0622146	0.121973	0.0211705	0.0851928	0.129503	0	0.0212909	1.18091	0.69151	0.0920386	0.119188	0.0355776	0.113792
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top