TCONS_00069156 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069156
Unique Name	TCONS_00069156
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1198

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_495:151610..157809+

transcript sequence

>TCONS_00069156 ID=TCONS_00069156|Name=TCONS_00069156|organism=Clytia hemisphaerica|type=transcript|length=1198bp
CTAGGCGAGGGAGGATACGGGCAAGTTAAGCAAGCGTCTTACGTGAACTT
TAACTGCCCTATTGATCCTCTCGCTCGACGGCTCCGCTCCTTAGGACACA
ATGACCAAGTTGCTATCAAAGTCATGCCGACTTCACGTGGTATGGCACCC
ATAATAATGGAGCTTAACGCAATGAACTTGTTGAAAGGTTGTCAGAATGT
TGTCCAGATGCTGGATTTCTTTCAAGGAGAAAATCATTGCTACCTAGTAA
TGGAGCTCTGCAAAGAAGACCTGATGACAACCTTAAACGAACGGATGCAC
ACAAAGCCAAACATAAGAGAAATCTTCACACAAACTTTGAATGGCGTTCA
TCAATGCCATTTGAAGAGCATTGCTCACTGgtGATTTGAAATTAGAGAAT
GTTCTTATTGATCACGATGGAGCTGTAAAAATTACAGaCTTTGGTCTTGG
AATGATTCCATCCTCACCCGGTAACGGTTGCCAAAAATTTTGTGGTACAC
CAGAATACATGGCTCCTGAGGTCCTCCGTGGATACGTTGGCTTCGATAAC
ACGCCATACGACCCCTTCAAAGCAGACATGTGGAGCTTgggcGCCATTTT
GTATGCAATGTTGACGGGAAAGTTTCTTCCCATTAATTGGTCGAAAGATT
TATTCGTGTCTGACGAATTGCATGATCTGTTAACCAAATTGTTGAACCAC
GACCCAGCGTCGAGACCATCTACGTCAGAAATTATCAACCATCCTTGGTT
AACACCTTCTCCTTCAGCTATTGAAGCGaaatcCGCAAACAGTGTTAAGA
AAGAACAGAAAGAAGTTGCTAAGACTGTATCACAATATCATCAAGTGAGC
GTTAACAAAGCTTTGGATGAAAAGGCACAAAAAATGAAGAGCCAAAAATC
AGAAGAGCTCGCCTCGCAAGATGTGAGAGTACAAATAAACGAATACCGAC
TTCATACACTgttcatcattgacaataagaCATTCAAACAAGATCACGTG
AATGTCATCAATGTCGCTTCCAATCCTAAATTCCCTAATGGACATCATTT
TCAGCCTGCTGAATTATGGGACTATCCTAACGGTCACCATTTTCCTTGCA
TGGAATTCTGGGAATGAATtaagcaaaaataatttattagtttttttcaa
ttttgtaaatagtatacaatgatggtgttacatcaaaccaaaatcaaa

Run BLAST on NCBI

transcript from alignment at scaffold_495:151610..157809+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069156 ID=TCONS_00069156|Name=TCONS_00069156|organism=Clytia hemisphaerica|type=transcript|length=6200bp|location=Sequence derived from alignment at scaffold_495:151610..157809+ (Clytia hemisphaerica)
CTAGGCGAGGGAGGATACGGGCAAGTTAAGCAAGCGTCTTACGTGAACTT
TAACTGCCCTATTGATCCTCTCGCTCGACGGCTCCGCTCCTTAGGACACA
ATGACCAAGTAAGTTTATGTTGAACTCTGAAGGTTTATGCGAAACTATTC
GTGTTTTAAGCTAAATTACCTATGTTTCAAATCTGTTTGGCTTTGTTGTT
AGACAGTgacttcaaaactttcaaacacatATTGGGGAAAGAAATTTGAA
CATTATTCCTTCCTTTTTTCATTGAAGGTTGCTATCAAAGTCATGCCGAC
TTCACGTGGTATGGCACCCATAATAATGGAGCTTAACGCAATGAACTTGT
TGAAAGGTTGTCAGAATGTTGTAAGTATCTTTTGTTTCAGGATTTACATA
GCGTTAACGATCTCTAATTcgacgctctattattcgatacgctcttttat
tcccttgaaaattgaattagagagtTTCAACCTTTCGTGACGGAATCACC
CGGACAACTACCGCCGCCCTCTGCCGATCTCCCTGGAGAGCTACCCCAGA
ATAGAAATATTATTTCAGTACTTCCTAAGAGGTATACTGAAATCCCAGCA
ACTTAtagtgaaaaattgaagaaacatattttttcatattttttattaaa
agtcgcgctatcaaataaataaattctcaaATGCAAAAATTATTGGACTT
ACCAAAAAAGAGGATTAGAACATCCCTGTGCCACAGATCCGGTGGGACCT
CTACCCACTGGGAAATCAATCCAAAGTTTTGTCTCCGTTGGGagaaaata
ccctaaaatttcagcTCCTCTAGAAAGCTGACTTTGTTTtctagaatttc
tatcccattaTTGGGATTTTGATAGTGATTTTCATTCCcacttttggaaa
aaagttccactgaggctgtgagacaggggtgtattagaTCATCGTTGTCA
CGCATCGACCTAGATATAAGACGATTCACACTTTTTATGTTCCTATAGGT
CCAGATGCTGGATTTCTTTCAAGGAGAAAATCATTGCTACCTAGTAATGG
AGCTCTGCAAAGAAGACCTGATGACAACCTTAAACGAACGGATGCACACA
AAGCCAAACATAAGAGAAATCTTCACACAAACTTTGAATGGCGTTCATCA
ATGCCATTTGAAGAGCATTGCTCACTGGTAAGATCTTCTTTGGATAAAGt
ttaccccggggggggggcattaAGGCAAATtggtgacgggtatgtgcggc
agTTAAGGGTAATACTCTATAGAaatgctctaaaagagtttaaaatttgc
aaaaatgcactgtaagggtatgaatttcaccgattttgattctaaaagcc
attttttcgCCACACATATCGCCAGTTgataaacccactgccccccggGA
GTTTACCATTGCATATTGGCAACCCGTTTAGTAAAATGTTGGGTGtcatt
tagaatcaattttacacccctgtctaaCAGCCCtggtggaaatttttttc
ttcgccAATCGATATAAAACTTTCTATCAAAGATTCCAATTTGGATAAAA
CTTCTAGTGTTGTTTCACTAAAAAACCAGTTGGGACGGCCTTGGATTGCG
ATTCTTTTTACATTGAAATTCAAATGAGGATGAggtcaaagtcaatttcc
caactgggacgaaattttggccaaattttttaATGCGGTTGGGgtcccaa
cgggtctgtgacacatgaCTTTAATATTAATGGTTAATACACAGCTGTCA
ATTGTGAGTATACAATGTGTAGTATCGGAAGTACCACGAATCTGACTGGT
ACAAATATACTTGATGTGGTAGTAGAACGAACCGGTAAAGAATGTTGACC
TTGGGAATAgataaattttacaaattttacaaaaattcatgtttttttgt
ttcagtGATTTGAAATTAGAGAATGTTCTTATTGATCACGATGGAGCTGT
AAAAATTACAGGTACGTTCTGTTCTCCATGGTTTTATTATAGAACTCCGT
CATAATTAGGCACTATGATAAGTCCCACTTATGAAGCgtttatgaatatt
tttttgatagaGGTCTGAAACCTACTGGAGGCTCccagccccgggggggg
gggggactagggNGAAGCgtttatgaatatttttttgatagaGGTCTGAA
ACCTACTGGAGGTTCCCAGcaggcacacgacgttgtttaaacgttaacct
aacgttatatggacgttgtgaatgttagataaacgttgaaacagcgTTGT
GTGCCTGGGTAATTAAAATACTTAGATAATaaacaaatcaaataaatttt
tcagaCAGGAAAAAACACCATACATTTACGAGATATTTCGCTCATTTCTT
TGAGTATTATATTGTCTAAAAGTAGAAAAATTAACAGATTAGTCaaataa
atcaagaaaatcaaaaaataacaaactagAAATTCACTATGCCCTCTTCC
ACAACAACATCACTTAAATAAGTATAATATAAGTATAatcaaaaaatgta
atttttttttctcatttcagaCTTTGGTCTTGGAATGATTCCATCCTCAC
CCGGTAACGGTTGCCAAAAATTTTGTGGTACACCAGAATACATGGCTCCT
GAGGTCCTCCGTGGATACGTTGGCTTCGATAACACGCCATACGACCCCTT
CAAAGCAGACATGTGGAGCTTGTAAGCTAATGCTTTTTCTCTTTGATTTT
AAACTCATCTTTTAACAGCTCTTCTATATCAACCTCTATTTTGTGATGTA
GATCTGACCTGTTTGATGAGCCGATTTATTCCAAGTGGCGTTACTTTTCT
CGGAAAACGAAAAtgagaagggttaaaaaaagattgaattgaaCAAAATT
TAATAATTGCTTTTAATAGACGGTGTATAAGAATTCTTCTCCTTCATTAT
ATTTTTCAGTTCCTCTATTTACCCTGCTTTTNAtgagaagggttaaaaaa
agattgaattgaaCAAAATTTAATAATTGCTTTTAATAGACGGTGTATAA
GAATTCTTCTCCTTCATTATATTTTTCAGTTCCTCTATTTACCCTGCTTT
TGTGCGCTTTTCCGTGGCCACTATTCTATTGCAACTTGCTATTACATTtg
ctttttgattttcattttcaggggcGCCATTTTGTATGCAATGTTGACGG
GAAAGTTTCTTCCCATTAATTGGTCGAAAGATTTATTCGTGTCTGACGGT
ATGTTTACATGACTAGTTCTTTTAAATGGATGTTATCTTTCAGTTTTGAA
TCCTTGGCCCTCTCTGTACATGTTTTGAGTGAATTAACTTTCTGTTTGGT
AAATATTTGAGGCTAACGTAAGAATTTTCTGTTCTCGATTTTCTCAAATG
ATGATAAGTActttaaattgcttaaaaaaagcaGATTATGCTAGGAGACT
TACTGGACGCATAAGTCCATTCTTTTTAAGGAGACGAGAAATGGATAACC
CCGGATTTAAGACTATTAACACTTTTTCAGCCTGTAATGTTAGGTACATA
ATgtaaaaaaacctaaaaaagtgTGTTTTTAGCCATTCTTCCTTGGATTT
TCATCTTGGTTGTAGGTCTAAGATCTCCTATTCGTCATGGAGATCGAGAG
GACTTTTATATCCATTAGTTTGGGGGTGtgattcaatttcatttttattc
tttaGAATTGCATGATCTGTTAACCAAATTGTTGAACCACGACCCAGCGT
CGAGACCATCTACGTCAGAAATTATCAACCATCCTTGGTTAACACCTTCT
CCTTCAGCTATTGAAGCGGTATGACAATTAACTTCTTAACAATAGCCTTT
TCAACTTATGACTTTGTATTCCCAGCTGGCAATCAACGTTGtgtcaacgt
ttatctaacgttcacaacgtccatataacgttagattaacgttaaaacaa
cgttgtgtgtcagctgggttcaGTAAATTTTGGTCATCAACTTTAAGGGA
CCAGGTTTGACTTTAAAGCAAAAGgtttagaaattgaaaatttttccctg
GAACCAAAAGAAATATGTACCCCGAAGCGGCAAGCTCGCAATGTATGGAT
GGATTGAAATAGTCGGACTTCTGAAACCGTCAAAATTGAATTCGACGTAC
TTTTAATTGCATATCTAGTCGGTGTATGATGTTCAAAAGTTATATCACAT
TATATTCACATCATATTATACATTATATCACACAGTGCGAGCTTGCCATC
GAAGCACTGCCTTTCCCAGGTCAAATTAGTCAAATTTTGTCCAAATGTCG
TCTGTACTGTAAAACATAAGGgcaaagtgaaaaatttttaacaatgtacg
ccttttcttttcagaaatcCGCAAACAGTGTTAAGAAAGAACAGAAAGAA
GTTGCTAAGGTAAAAGACTTTGATATTGCAATGCCTtcaatgataaaaaa
taatGCAAAATACACCGGAACACCGGGAGAAAACCTAACTTGTCGCCATA
AAGAAATCCCCAAATATCGTTTATCTATTGTCTACCACGGATTTCTGAAa
gtttcacaaaattttttttatatgttttcacGGTTTTTCGTCATTTTTGT
AGACTGTATCACAATATCATCAAGTGAGCGTTAACAAAGCTTTGGATGAA
AAGGTAAGAAACATAATGTtcttttaacgttcatctaacgtttcatAAAT
GATTGTACGTTAGTTGGATGTTAAGtgaacgttgtttcgacgttcctttg
aacgttgtttcgacgttcctTTGTCAACGTTCCCTTGTTACACTACCCGC
TATTTTATGAAAACCAGTAAATATTGTTTGAAGCTTGGCTTTCTTATTCA
TTTACTTTAATCATTTGTTGACTTAAAAAGTTCTCAAAACTAGCATTTTC
TTGACCATTTTCAAATGTCTTTCCAAATTTGAGCCTTgtataaatgttct
tataaaattattctcGAAAAAGTGTGTATAAGTTAATTCTAAAGAATTAA
TCTTTGGAAGCCTTGCTTCCTTGAAGGAAACTTAGAAATGAAGCTGTAAA
TGTAAATCTGTTAACTTTAGGCACAAAAAATGAAGAGCCAAAAATCAGAA
GAGCTCGCCTCGCAAGATGTGAGAGTACAAATAAACGAATACCGACTTCA
TACACTgttcatcattgacaataagaCATTCAAACAGTAAGTTtagagtt
tttatttttgatgataTGCAAAGTATTTCTAATAACGCAgaatttaaaca
aaatatttcttgaaatttgTGCAAACGACAAAATTCACTCTTTCTTTTGT
CTTAAATGCTATTCAAGCAAATTATAATTCATCCACGATTTCACTGTTTA
GCCCCTCAAATCTGAGTCACGTGTATTTACACTCAAAATTAGCCAATACA
TACCGAATCCCAGAATTAAGGCTATTACTCCTGAacatttgatttaaaaa
ggcaTAAGCAGAATGCTTTAAAGAGTATAATATAACCGACCAGAAATGAT
GTCCAAACGCAACTTTTACGTCATTTTTTTAGAGTTACGTTGGGTAATCG
ATAtcgtttttcgagagctttcgactGATATAAGCGGTTtcgactttgaa
attttgtctaaatttaGGGTTTTGTCAGTGACGTCTATTTTTGGGTCCTG
AAACATTTCCCTAGACCTTAGCGAAAAACCACCCAGGCGACAAACTATAT
AAATGCTTCATTCTTTGAAATATACCAAGTTTGGTTTCGTCTCATAAAAG
ATATCACGGGCTCCTAAGGGTTTGCCCCCTACTAATacgccttttcgacc
gtagtcgtaAGGTCAGGCGCGTACCACTTTTTATCCCACTAATCTCGATC
CAATccatttttgacacatttttctattgtctataggtgggaaaaaggac
tgggacggtatAGTGGGATAAAGTGGACAAAGAATATGCCTGTGCGATAA
TTGgcggctacagtcgaaaaggtgtaatAGGCAATGCGCTGTCAAAGTTT
TTGCATACCTTTTAAAAAcctcttttctttgttttgtttcagAGATCACG
TGAATGTCATCAATGTCGCTTCCAATCCTAAATTCCCTAATGGACATCAT
TTTCAGCCTGCTGAATTATGGGACTATCCTAACGGTCACCATTTTCCTTG
CATGGAATTCTGGGAATGAATtaagcaaaaataatttattagtttttttc
aattttgtaaatagtatacaatgatggtgttacatcaaaccaaaatcaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043106	XLOC_043106	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_495	supercontig	scaffold_495:151610..157809 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0406165	0	0.0483759	0.0382272	0	0	0	5.98862e-05	0	0	0.0477151	0	0.0203695	0	0.0807877	0.0276016	0.457597	0	0	0	0	0	0.154058	0.0629541	0	0	0.199077	0.202828

Blast

[Close]

BLAST of TCONS_00069156 vs. Swiss-Prot (Human)
Match: PLK3 (Serine/threonine-protein kinase PLK3 OS=Homo sapiens GN=PLK3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.216e-19
Identity = 45/144 (31.25%), Postives = 66/144 (45.83%), Query Frame = 2

Query:  365 RALLTGDLKLENVLIDHDGAVKITDFGLGMIPSSPGNGCQKFCGTPEYMAPEVLRGYVGFDNTPYDPFKADMWSLGAILYAMLTGK--------------FLPINWSKDLFVSDELHDLLTKLLNHDPASRPSTSEIINHPWLT 754
            R +L  DLKL N  I  +  +K+ DFGL      P    +  CGTP Y+APEVL          + P +AD+WSLG ++Y +L G                  ++++    +S     LL  +L   P  RPS  +I+ H + T
Sbjct:  179 RGILHRDLKLGNFFITENMELKVGDFGLAARLEPPEQRKKTICGTPNYVAPEVLL------RQGHGP-EADVWSLGCVMYTLLCGSPPFETADLKETYRCIKQVHYTLPASLSLPARQLLAAILRASPRDRPSIDQILRHDFFT 315

HSP 2 Score: 43.5134 bits (101), Expect = 2.216e-19
Identity = 28/95 (29.47%), Postives = 48/95 (50.53%), Query Frame = 1

Query:  112 AIKVMPTSRGMAPIIME--LNAMNLLKGCQN--VVQMLDFFQGENHCYLVMELCKEDLMTTLNERMHT--KPNIREIFTQTLNGVHQCHLKSIAH 378
            A+KV+P SR   P   E  LN + L +  Q+  +V+    F+  ++ Y+ +ELC    +  + +  HT  +P +R    Q L+G+   H + I H
Sbjct:   89 AVKVIPQSRVAKPHQREKILNEIELHRDLQHRHIVRFSHHFEDADNIYIFLELCSRKSLAHIWKARHTLLEPEVRYYLRQILSGLKYLHQRGILH 183

The following BLAST results are available for this feature:

BLAST of TCONS_00069156 vs. Swiss-Prot (Human)

BLAST of TCONS_00069156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PLK3	2.216e-19	31.25	Serine/threonine-protein kinase PLK3 OS=Homo sapie...	[more]

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TCONS_00069156 (transcript) - C. hemisphaerica