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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069155 ID=TCONS_00069155|Name=TCONS_00069155|organism=Clytia hemisphaerica|type=transcript|length=1217bpRun BLAST on NCBI protein sequence of TCONS_00069155-protein >TCONS_00069155-protein ID=TCONS_00069155-protein|Name=TCONS_00069155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp FVLGRSLGEGGYGLVKQASYVNFNCPIDPLARRLRSSGHNDQVAIKVMPTRun BLAST on NCBI transcript from alignment at scaffold_495:149571..157809+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069155 ID=TCONS_00069155|Name=TCONS_00069155|organism=Clytia hemisphaerica|type=transcript|length=8239bp|location=Sequence derived from alignment at scaffold_495:149571..157809+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_495:149571..157809+ >TCONS_00069155 ID=TCONS_00069155|Name=TCONS_00069155|organism=Clytia hemisphaerica|type=CDS|length=12474bp|location=Sequence derived from alignment at scaffold_495:149571..157809+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069155 vs. Swiss-Prot (Human)
Match: TSSK6 (Testis-specific serine/threonine-protein kinase 6 OS=Homo sapiens GN=TSSK6 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.515e-30 Identity = 87/285 (30.53%), Postives = 135/285 (47.37%), Query Frame = 3
Query: 3 FVLGRSLGEGGYGLVKQASYVNFNCPIDPLARRLRSSGHNDQVAIKVMPTSRGMAPIIMEL--NAMNLLKGCQN--VVQMLDFFQGEN-HCYLVMELCKEDLMTTLNERMHTKPNI--REIFTQTLNGVHQCHLKSIAHCDLKLENVLIDHD-GAVKITDFGLGMIPSSPGNGCQKFCGTPEYMAPEVLRGYVGFDNTPYDPFKADMWSLGAILYAMLTGKF---------LP------INWSKDLFVSDELHDLLTKLLNHDPASRPSTSEIINHPWLTPSPSA 788
+ LGR++GEG Y VK A+ S + VAIKV+ R + + +++L+G ++ +V + +F + N Y+VME DL+ + +R P + R++F Q V H + H DLK ENVL+ D VK+TDFG G + +CG+ Y +PEVL G PYDP K D+WS+G +LY M+TG LP + + + L +S+ L+ +LL P++RPS ++ + WL S
Sbjct: 12 YKLGRTIGEGSYSKVKVAT----------------SKKYKGTVAIKVVDRRRAPPDFVNKFLPRELSILRGVRHPHIVHVFEFIEVCNGKLYIVMEAAATDLLQAV-QRNGRIPGVQARDLFAQIAGAVRYLHDHHLVHRDLKCENVLLSPDERRVKLTDFGFGRQAHGYPDLSTTYCGSAAYASPEVLLG------IPYDPKKYDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQKRGVLYPEGLELSERCKALIAELLQFSPSARPSAGQVARNCWLRAGDSG 273 The following BLAST results are available for this feature:
BLAST of TCONS_00069155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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