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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069150 ID=TCONS_00069150|Name=TCONS_00069150|organism=Clytia hemisphaerica|type=transcript|length=1037bp
CTGAAAGTCTAGTCAGTGACCTGGTGACACACTGGACATGTTGACATGCT
gatacttttgataaaattgttttttttacttcaattttGGAGGAGAACTT
CATTTTGAAATCCCATGTTTGGCACTCCTACACAGTAGAAAAAATTGAAG
AGACGAGACATATGACGTAAACACAATGCAAGTAGTAATTATATTCCCAA
GTGATTACGAGAACTCATTCTTAAAACAATGGTAAGTATTTTATTACGTT
TAACAAAGGAAAACACGAAGTCCATTTCTTTAGTGGATATGCATAAAAAT
TATGTAAGTACATCATGaagaaatttttacattttactgTGTGAGAGTTG
TATGAGTGGCTGCTTAAATGATGAcgggaaatttgttgaaagttaACTTG
ACAAGAGCAAAAGTCTGGAAAGGTAttcttttgttgaatttttgcaTTCT
AACTGATTTGTAATGGTTACATTGTTTTACTTCTCATAACAAAGCGAAAT
ATTTAATCTTTATCTAGCTTGCCTCGTCAGTTTGAAGGAAATAATTTGAT
AGACCATTTGACCATAACCAGGGGGTACTAAAATAATTCATCTTGTATAT
CCGATATATCCGTGACCCAACGGGTTTCGTTTGTACTTACTGGAAACAGA
AGAGGATAGTGCAGTTTAGGATTTCTGAGCTTTATTCTCACTGGCATTTT
TTTTCCAGCTGTGCCCTAAAAGGGGGCTCCAACGACCAATCTCTCGCAAT
AATTCCGACACAGAAACATACGAATTTGGATTTGTGAATGTTGGGTCACA
GACACAAATATCAGGTTTAGCGTCAACGGGTTTCTCTATGTTGGGGAAGT
AATCTCCTAGAGTGATCTTTTCTCCAGTTGCATCGAGGGAAATTTGGACG
CCTTCCAGGGGACTTGAACAGTATCTGCAAAcctaaaatttttattatta
caTTAAATATAAACTCCACCCTATAAAAAATAGTAGAACAGGGCTATAGA
ATTATGAGCAGTAAGTTAAATTCAAGCGACATTCTTC Run BLAST on NCBI transcript from alignment at scaffold_495:9839..12029+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069150 ID=TCONS_00069150|Name=TCONS_00069150|organism=Clytia hemisphaerica|type=transcript|length=2191bp|location=Sequence derived from alignment at scaffold_495:9839..12029+ (Clytia hemisphaerica)
CTGAAAGTCTAGTCAGTGACCTGGTGACACACTGGACATGTTGACATGCT
gatacttttgataaaattgttttttttacttcaattttGGAGGAGAACTT
CATTTTGGtaagtaaaatcaaaatttaaatagGTATATGTATTTTTTGAT
ATATAAGGCCCTGACCAGTCAGGGCCTCTTTGGTCTTTTATAACAttacc
gtaggatcgtctaatctcgacatacgtcttgcaatctcgacaccggatct
gtaaaataatcaaaacaaaccttgaatgaaattcttggtaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtccat
cattaaaattttacaactttattacgcttcaagtcacgtgataaaaataa
ttcgcgcgcttagttgacctggtttccatttccttattatttattgcaag
cacacgctctaggcgctaggaggccacgttaaacttctaggcgccgcacc
taagcacacccggtcccttttcaaattcataaggaaactgggttctttta
attattttcggttcacggtaaaaaggtctactaaaaaattcctcgcgttc
aaaatgttgttgtgatttgggcatcttcgttgaaagcatgctaattagtt
ttttagtcattactacatcgttaaagtgttcttttcaaatataagtaata
acagttcacatttctcatattatattaacaatctgtgacgtggatagaga
gagagaacaatttagtgattgattgacaGTCAAGTACACTATCATATTTT
AAACggcaaaaaaatgagtaatctcATCATGTAGTGCCacgctaaacaaa
agaaaaaaaagaaagatcaaaggctTGCAACAAAAAGTACTTAAAACGTT
CAATAACACGTCgtggtgaaaacaaaaatacgaTATTCGTTTAGCGGCTC
TTATAAGGAACACAATGATATATATTTCTGCTACCCCACAACTTGCAGTC
GAAAAATTGggcaaaatattgaaactaTTTCTGCGATGAAGTTTCTCAAA
TTTCCTTATAGAAATCCCATGTTTGGCACTCCTACACAGTAGAAAAAATT
GAAGAGACGAGACATATGACGTAAACACAATGCAAGTAGTAATTATATTC
CCAAGTGATTACGAGAACTCATTCTTAAAACAATGGTAAGTATTTTATTA
CGTTTAACAAAGGAAAACACGAAGTCCATTTCTTTAGTGGATATGCATAA
AAATTATGTAAGTACATCATGaagaaatttttacattttactgTGTGAGA
GTTGTATGAGTGGCTGCTTAAATGATGAcgggaaatttgttgaaagttaA
CTTGACAAGAGCAAAAGTCTGGAAAGGTAttcttttgttgaatttttgca
TTCTAACTGATTTGTAATGGTTACATTGTTTTACTTCTCATAACAAAGCG
AAATATTTAATCTTTATCTAGCTTGCCTCGTCAGTTTGAAGGAAATAATT
TGATAGACCATTTGACCATAACCAGGGGGTACTAAAATAATTCATCTTGT
ATATCCGATATATCCGTGACCCAACGGGTTTCGTTTGTACTTACTGGAAA
CAGAAGAGGATAGTGCAGTTTAGGATTTCTGAGCTTTATTCTCACTGGCA
TTTTTTTTCCAGCTGTGCCCTAAAAGGGGGCTCCAACGACCAATCTCTCG
CAATAATTCCGACACAGAAACATACGAATTTGGATTTGTGAATGTTGGGT
CACAGACACAAATATCAGGTTTAGCGTCAACGGGTTTCTCTATGTTGGGG
AAGTAATCTCCTAGAGTGATCTTTTCTCCAGTTGCATCGAGGGAAATTTG
GACGCCTTCCAGGGGACTTGAACAGTATCTGCAAAcctaaaatttttatt
attacaTTAAATATAAACTCCACCCTATAAAAAATAGTAGAACAGGGCTA
TAGAATTATGAGCAGTAAGTTAAATTCAAGCGACATTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069150-exon-scaffold_495-1491911889:9839..9945 | TCONS_00069150-exon-scaffold_495-1491911889:9839..9945 | Clytia hemisphaerica | exon |
| TCONS_00069150-exon-scaffold_495-1510915933:9839..9945 | TCONS_00069150-exon-scaffold_495-1510915933:9839..9945 | Clytia hemisphaerica | exon |
| TCONS_00069150-exon-scaffold_495-1575043694:9839..9945 | TCONS_00069150-exon-scaffold_495-1575043694:9839..9945 | Clytia hemisphaerica | exon |
| TCONS_00069150-exon-scaffold_495-1491911889:11100..12029 | TCONS_00069150-exon-scaffold_495-1491911889:11100..12029 | Clytia hemisphaerica | exon |
| TCONS_00069150-exon-scaffold_495-1510915933:11100..12029 | TCONS_00069150-exon-scaffold_495-1510915933:11100..12029 | Clytia hemisphaerica | exon |
| TCONS_00069150-exon-scaffold_495-1575043694:11100..12029 | TCONS_00069150-exon-scaffold_495-1575043694:11100..12029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_495 | supercontig | scaffold_495:9839..12029 + |
Blast
The following BLAST results are available for this feature:
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