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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069144 ID=TCONS_00069144|Name=TCONS_00069144|organism=Clytia hemisphaerica|type=transcript|length=427bp
CAAATGACGGGTGTACCGGTAACGGTCTGTGAAATATTGATTATCGGGAA
AATGATTCACATTcgtaaaaacaaaatggcgatgGATTGACCCTCAGGAA
TGGAGAATCAAAGCTTGAATTATATCCTCATAATCCAACCTGAAGACTTT
TCAAAGACCTTCTTCCTTTACAGGATTAGCTGTGCAAACTATCTCAAGAT
ATGAGACTCATGCGTGCCATTGGCGTTGAAGGTGTTGTTGAAGTATCtgg
ttaaaaagaaaggttaagGTAAGAACATTATTTCCCTCTAAAATACCTGA
ATATTTGATTCTTGGGATTCAGAAAttgttcttttcaaaaaagaattttg
atttttcactttttttctcaCTATCCTTTTTCTCACTATCCTTTTTCATT
GTTAGGTAtgcttgtttttgaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_494:135224..139228- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069144 ID=TCONS_00069144|Name=TCONS_00069144|organism=Clytia hemisphaerica|type=transcript|length=4005bp|location=Sequence derived from alignment at scaffold_494:135224..139228- (Clytia hemisphaerica)
CAAATGACGGGTGTACCGGTAACGGTCTGTGAAATATTGATTATCGGGAA
AATGATTCACATTCGTAAAAACAAAATGGCGATGGATTGACCCTCAGGAA
TGGAGAATCAAAGCTTGAATTATATCCTCATAATCCAACCTGAAGACTTT
TCAAAGACCTTCTTCCTTTACAGGATTAGCTGTGCAAACTATCTCAAGGT
AAATTTTGACATAATTTATAAAAATTTGTTTCTTATTGTTGTTCTACAAG
CCTCATATTTGAAAGGTCTGTTATTTCCCTATTCTGCCAAAATGCTAAAA
AGGATTGGAGCCATAAACATCATATTGACATGAGTTATGAATCTTTATAC
CTTCAGCAATGACTAGAATGTTAAGGGAATCTTAAATTGTATGTAATAAA
CATCAAAAGAAGCTTTCTATAAATTATAAACCACTCTTCCCCAGCGGCCA
GGCGGGCGGTGTCAATCGAACTGTTAGATTATCAAACTAATTGAACTTAA
TCGCACCCTATTGAACTATAGCTGTTCGATTACCAAAACCAATCGAACAC
CTATAGAACTGGGAACTCTCGTAAAGTTCAATGAATGCTCGATTTATACG
ATTATAGTTCGATAAAGTTTGATCGCAGTTCGATGAATCCGATTGAGGTT
CGATCAGTTCGATTAAGATCGAAGTTTAAGTTTGAAGTTATGTTGGTTCG
CTTAGTTGGACTTATACCTTGCCGCCCAATTTTATTTTATATATATTCCG
AGGTGGTGTAGCTATTGGACCATCCAACGGACCACCCAATATCTATCCCA
TCGGATGGGACAAGCTGGAGCTTTTCCAAGCTCTTTTACGATTTGGTTGG
TCGTTACAAAGGTACATATTTGCCATGCAAATTACATCACTGTCTGGCTT
GGAATCCTTATTATATTGGACAGCAAGATCAATTTCCACTGCACATTACA
CGGCGCTTGCGTTTTGATTAAACAACCTCGTAATTTTCTGGAAGGTAAAG
AAAGGTAGAATCAATCTGACACAATAGACCTTTTTTCAAAGAGGCCACCC
TGTTGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCAT
AATTATTACAATATGCATGATACAGTAATTATACATGGCTCTATCTATCA
TTGTTTTTATGGCTGGACTACATAATTATTCAATAGGACGTCCTCTTTGA
AAAAAGGTCTGTTATCGAACCACATCAAACTTAAATCAAACTCATCAAAC
ACCAATCGAACCTTATCGAACACCAATCAAACTTCATTGAACAAAGAACA
GTCATCGAACTAAATCGAACTTATCAAGAAATTTTTGTAAAGTTTGATAG
CTGTTCATCAGGTTTGGTAATCGAACAGCTACATCGTTTGATTTTGTTTG
ATAAAGTTCAATGATTATATTTATTACAAAAATCAGTTCGATAGGGTCGG
TTGACACTGCCTGGTCTTCCACTTAACAAAATCATAAATTTTTCCTATTG
ATTACTAATTGGACTGTTTTTAAATCAAACTTGATGAAACTCAAATGAAT
AGGAATCAAAAGGAACTGAATGGAAGCCTCTTCATGATGGTTAGATTTTT
TAAGAAACCAAAAACGACTTTCGTGCAAAATATCTGAGAATATTTGTATC
ATAAATAGAAATATTAAAATATTAATGTTNAAGAAATCAAAAGGAACCGA
ATGGAAGCCTCTTCATGATGGTTAGATTTTTTAAGAAACCAAAAACGACT
TTCGTGCAAAATATCTGAGAATATTTGTATCATAAATAGATATATTAAAA
TATTAATGTTTAGCTTAGAATTTTTTTGCAAAATATCACAAAGATAAGAG
AATATAAAACATAAGAAATTATAAGTTGCTGGGATGTTGGCTATTATAAC
CAGACAGTGTCTATTGAATAACTATAACTTCAAACAAAAATTGAATCATG
GAATATAATGAAATATAATAAGTTATTTTACTGTATTACGCAGGTTATAA
ATAACTGTAGTTGTCTAGCTTTAGAAGCTTACTATTTTCAAACAAACCTA
ATCAAATATAATCAAATATGATCAATCAATCGAATACAAGCGAACTTAAA
TTTGGGGTAGTATTCCATTGATCAAATTAAATTCGACAATTGAAACAGAT
TGAAACCGCAAATCTTGGGAAATAGATATTGCAATTTTTTTGTGTTTGAC
AATGAAATTGTAATTACCTTAAGGGGATTAATTTTCGCGGGGATTATATT
TCGTGAATTTCGCAAGTTTTTCCAAAATTTGCGAAATATAATCCCCGCGA
AAATTTTAAAAACCTAATTTTGGCGAATTTTGTCTAAATAAGTTCCCTTA
ANAAAAATTTTAAAAACCTAATTTTGGCGAATCTTACTATACTAAATGAG
TTTATGAAAAATGTCTGTAACGCTAGCCCAGTAACATATTAAGGTTTCTA
AAATTTGAACGCCGCGGCTGGAAAACCTATCCACNCCGGCGTTTGCGACG
ACGGGAACCGTCTAGTTTTGTCTAAATAAGTTCCCTTAAAGGGAACGACG
CATGGTATATTTATGAAATGCTGATCTAGCATTGGCACAAACATCCATAC
GGAGGAGTATTTAGGAGTGCTGGATCATAACAAAAANTTTCAGAGTATAC
CATGGAAGTACCAGCAACTCCGACCCCTACTATAAGTATAGCGCTATTCC
CTTTAAGGTATTTGATTACGTTTAATTGATTCAATTGGCACCAGGAACTG
GTAATTATAAAATTTATAATAATTTTTTTTTGATCCAATTAGATTTTTTA
GCAGGCAATCGGTTATCAACAATTGATTCTTTAACTGCTCAAATGTAATC
TTGTCTTGGTTTCCAATAGATACAGCAATGGAGTCTTCTGACAGGGAATT
GATCTCAATTCTTTGTAGTTCTTCTTCAGTTTTATTTTTTTTTGATTTTA
ATTTCACCTCCAGCTGTGCGATTGAGTTGAAATAGTCATTTTCGTATGTT
TTTGTATCTTGCTTGTACTTTTCACGTATTATAATATAATCTTTGACAAC
CTGATCCTCTCCAAAAACTTTATTTAAAAGGAGGCTTGTTTTTGATGGCA
TCGGCTTTTTAATGATTTCGACTGCATCTAGTACAAAAATTTATATAGTC
AGATATCAAATGAGTATATTGGATCAATTCCTAATATCACTGTCTTTTTG
AAATAAAAAAAATTTTGAAAGAAAATTTGGCGGATTTGGCGCATTTGGCA
AATTTGACTGAAATCCGCCAAATTAAGTTCNAGATATCAAATGAGTATAT
TGGATCAATTCCTAATATCACTGTCTTTTTGAAATAAAAAAAATTTTGAA
AGAAAATTTGGCAGATTTGGCGGATTTGGCGGATTTGACTGAAATCCGCC
AAATTAAGTTCCCCCCAAAATTTCTTTTTTTCGCCATCCGCCAAATTTTT
TTTTTTTGTCCATCCGCCAAATTAAATTCCCTCTGAAAAAACTTTTTTGG
CCATCCGCCAAATTAAATTCCCTCCAAAATTTCTTCCTTTAAGGTATTAG
AAAAAAACTTACTTTCATTGCTTTTCTTAATTTTTCCTTTACTGCTGGAG
GATTTAGTGGCAAATGTTGCATCTAAAAGCAATTTTATCTACATTAATAA
AAGCTTACAAAAAATGAGACTATATTTATTTATTACTTTTTTATAATTTT
CCAGTACTTAATCAAACCTCATTTATCCATGAAAGTCTCTTTAATAATGG
TTCTTATTATTAGTTATAAAGCCTAGATATGAGACTCATGCGTGCCATTG
GCGTTGAAGGTGTTGTTGAAGTATCTGGTTAAAAAGAAAGGTTAAGGTAA
GAACATTATTTCCCTCTAAAATACCTGAATATTTGATTCTTGGGATTCAG
AAATTGTTCTTTTCAAAAAAGAATTTTGATTTTTCACTTTTTTTCTCACT
ATCCTTTTTCTCACTATCCTTTTTCATTGTTAGGTATGCTTGTTTTTGAA
AAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069144-exon-scaffold_494-1575043694:139031..139228 | TCONS_00069144-exon-scaffold_494-1575043694:139031..139228 | Clytia hemisphaerica | exon |
| TCONS_00069144-exon-scaffold_494-1575043694:135224..135452 | TCONS_00069144-exon-scaffold_494-1575043694:135224..135452 | Clytia hemisphaerica | exon |
| TCONS_00069144-exon-scaffold_494-1510915933:139031..139228 | TCONS_00069144-exon-scaffold_494-1510915933:139031..139228 | Clytia hemisphaerica | exon |
| TCONS_00069144-exon-scaffold_494-1510915933:135224..135452 | TCONS_00069144-exon-scaffold_494-1510915933:135224..135452 | Clytia hemisphaerica | exon |
| TCONS_00069144-exon-scaffold_494-1491911889:139031..139228 | TCONS_00069144-exon-scaffold_494-1491911889:139031..139228 | Clytia hemisphaerica | exon |
| TCONS_00069144-exon-scaffold_494-1491911889:135224..135452 | TCONS_00069144-exon-scaffold_494-1491911889:135224..135452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:135224..139228 - |
Blast
The following BLAST results are available for this feature:
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