|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069124 ID=TCONS_00069124|Name=TCONS_00069124|organism=Clytia hemisphaerica|type=transcript|length=2102bp
GTATAAGCTGCTGATATTAGGAAACCATTTAACATAATATTTGTGTATAT
TTTCAGAGATTTGAAACTGGAAAAGAGAACAAAACTACCATTATAAAATG
TTAGGAATGACTTGGTACAAAGTTTTCATTGCTATTTTGTGTTTTGCATT
TATTGGGCTGAcaatattatttgaaatttcattcaaaatggaCATCAGTA
TCAGTAAAGTCTTGAAAACAAACCCATTTTCTTCAAATAACAACTCAATC
GACTTTGATACTCGATATCTAGATTTGTTTTTGAAGCAGTTGTCACGTGC
TCAACGGTTCGAACGCAATCAAGAATTAAGCGACGCGATCGGGAAAATGG
TCACAAGATTGAGTCGTATCAATAGTGGTTACCAAATACAACACGATCCT
CGTGACAATATAACCGTCATTTTCAATGCAGTGAATGAAATAACCGATCT
GAAAGTTTTGCTAGAGGATATAAAGAATAAGCCAAAGTGGACAGTATCAA
CTCGCATCCAACTCGGATTAACTCGGTCTATGGTAGATAAACATTCTTCA
TTGATTAAAGACATCCAACACATCTTACCCAATTTCAATACTACTATTTT
AGCATCAAAATCATTAGTTCAAAGCTTGAGAGATTTGGTGGCAAAAAGct
ccacacagtttgttttgtTGACCAAAGGGATCCGtagatttgaccaaaat
tttgatatgagaaagtttttgaaaccaCTGGTAAAGAAGACATGCGATGT
TATCTCGGGATCGGTAATCTACCCGGACGGATGGTGGAGTTCCGGATGCT
ACCAATCAAAGCTTATTTGGAGTCAATATAAAAGTGTGTTTGGGTTTGAT
GTATGTTATAAACACCAATTGGTTCGTTGTGATTATTTTGATGGACCCTT
TGCGATGGATAGAAATGTACTGCTCGACTATTTAACATCTAGAGTGACGA
CAAAATGTGCTGATGATCTTGTCTACCCGGAAATTCTATATGTCATgaac
aaccaaaacaaaataatgaaatCACACCCAGCCAGTATTTTTTACAAGAC
TGACTGGGTTGATTTCCATGATTTAACAAGANAACCCAGCCAGTATTTTT
TATATGACTGACTGGGTTGATTTCCATGATTTAACAAGAGCTCATTTACT
AGACTTTGCTATAcgtaatgaaatttcagaattttattTACCTGTCATAA
ACGGTACACAAACACACTTAGAATTTAATTATATTGAATCTAAAGTCAAA
TGCAATCTTAGAGCAACTCAGCTACGGCAAAGAGCTTGTATGAGAGACCT
TCATTTCATGCTAGTTAATACTTATAAATTGTTCGATAAACTAGGCTATC
AATACACGAATGAAGACGGGTCTGGTCTAGCGGCTGCTAAACTTCATGAT
ACTATACCATGGGACCTAGACCAAGACTTTGCTTTTAGAGCTTCAAATTT
AACGCATGTGGTTCAACATGAATCGGAATGGAGAAAATTAGGAATGAGTT
TTAGCCTTGAACTCAATAAACCGTGTGTCAAGAATATGAGTCATGTTAAG
AAAGATAATATAATCATGGGATGCGGGTATATTGGTATTGGAAATAAAAA
CTGGCGAATGGAATTATGGGGGTCGTATATTCTTTTAGGTGATTTttacc
agccttggaaaatacCAGCCCGTGCCGTCGCAAAAGAACAAGAGCCGTTA
CGTTCTAGCCGCATCAAAGGACACGATACGAAAGTTAGACTGGATGACCA
CTGGGCACAAAACAGACCGAATCCAGGCTATTATGTACGAGGTAGATATG
GTGTGGATATGTTAAGACATGCAAATCATTGGCTTTATGGAGGAGCATCT
GGAAGTTATGGGATTTATAAAACAGGACCGAGATTTGTGGCCTGTTCGAA
TCCAGGTTTTCATGGATGTATGGACCAGTATCTTGCTGATGGAAATATTC
AATTCCAAAGACCTTGGGCTTAGGGCTCGATTCCTTAAATCATTTGGTAA
TTTTTGctaggtttttttttaagatgacaTTTTtagtacaatcaaggtca
taatatttgtgaaaaaaagggaaattccccaggaagttttgaaaccacaa
tc Run BLAST on NCBI protein sequence of TCONS_00069124-protein >TCONS_00069124-protein ID=TCONS_00069124-protein|Name=TCONS_00069124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MLGMTWYKVFIAILCFAFIGLTILFEISFKMDISISKVLKTNPFSSNNNS
IDFDTRYLDLFLKQLSRAQRFERNQELSDAIGKMVTRLSRINSGYQIQHD
PRDNITVIFNAVNEITDLKVLLEDIKNKPKWTVSTRIQLGLTRSMVDKHS
SLIKDIQHILPNFNTTILASKSLVQSLRDLVAKSSTQFVLLTKGIRRFDQ
NFDMRKFLKPLVKKTCDVISGSVIYPDGWWSSGCYQSKLIWSQYKSVFGF
DVCYKHQLVRCDYFDGPFAMDRNVLLDYLTSRVTTKCADDLVYPEILYVM
NNQNKIMKSHPASIFYKTDWVDFHDLTRXPSQYFLYD Run BLAST on NCBI transcript from alignment at scaffold_493:360853..362954 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069124 ID=TCONS_00069124|Name=TCONS_00069124|organism=Clytia hemisphaerica|type=transcript|length=2102bp|location=Sequence derived from alignment at scaffold_493:360853..362954 (Clytia hemisphaerica)
gattgtggtttcaaaacttcctggggaatttccctttttttcacaaatat
tatgaccttgattgtactaAAAAtgtcatcttaaaaaaaaacctagCAAA
AATTACCAAATGATTTAAGGAATCGAGCCCTAAGCCCAAGGTCTTTGGAA
TTGAATATTTCCATCAGCAAGATACTGGTCCATACATCCATGAAAACCTG
GATTCGAACAGGCCACAAATCTCGGTCCTGTTTTATAAATCCCATAACTT
CCAGATGCTCCTCCATAAAGCCAATGATTTGCATGTCTTAACATATCCAC
ACCATATCTACCTCGTACATAATAGCCTGGATTCGGTCTGTTTTGTGCCC
AGTGGTCATCCAGTCTAACTTTCGTATCGTGTCCTTTGATGCGGCTAGAA
CGTAACGGCTCTTGTTCTTTTGCGACGGCACGGGCTGgtattttccaagg
ctggtaaAAATCACCTAAAAGAATATACGACCCCCATAATTCCATTCGCC
AGTTTTTATTTCCAATACCAATATACCCGCATCCCATGATTATATTATCT
TTCTTAACATGACTCATATTCTTGACACACGGTTTATTGAGTTCAAGGCT
AAAACTCATTCCTAATTTTCTCCATTCCGATTCATGTTGAACCACATGCG
TTAAATTTGAAGCTCTAAAAGCAAAGTCTTGGTCTAGGTCCCATGGTATA
GTATCATGAAGTTTAGCAGCCGCTAGACCAGACCCGTCTTCATTCGTGTA
TTGATAGCCTAGTTTATCGAACAATTTATAAGTATTAACTAGCATGAAAT
GAAGGTCTCTCATACAAGCTCTTTGCCGTAGCTGAGTTGCTCTAAGATTG
CATTTGACTTTAGATTCAATATAATTAAATTCTAAGTGTGTTTGTGTACC
GTTTATGACAGGTAaataaaattctgaaatttcattacgTATAGCAAAGT
CTAGTAAATGAGCTCTTGTTAAATCATGGAAATCAACCCAGTCAGTCATA
TAAAAAATACTGGCTGGGTTNTCTTGTTAAATCATGGAAATCAACCCAGT
CAGTCTTGTAAAAAATACTGGCTGGGTGTGatttcattattttgttttgg
ttgttcATGACATATAGAATTTCCGGGTAGACAAGATCATCAGCACATTT
TGTCGTCACTCTAGATGTTAAATAGTCGAGCAGTACATTTCTATCCATCG
CAAAGGGTCCATCAAAATAATCACAACGAACCAATTGGTGTTTATAACAT
ACATCAAACCCAAACACACTTTTATATTGACTCCAAATAAGCTTTGATTG
GTAGCATCCGGAACTCCACCATCCGTCCGGGTAGATTACCGATCCCGAGA
TAACATCGCATGTCTTCTTTACCAGtggtttcaaaaactttctcatatca
aaattttggtcaaatctaCGGATCCCTTTGGTCAacaaaacaaactgtgt
ggagCTTTTTGCCACCAAATCTCTCAAGCTTTGAACTAATGATTTTGATG
CTAAAATAGTAGTATTGAAATTGGGTAAGATGTGTTGGATGTCTTTAATC
AATGAAGAATGTTTATCTACCATAGACCGAGTTAATCCGAGTTGGATGCG
AGTTGATACTGTCCACTTTGGCTTATTCTTTATATCCTCTAGCAAAACTT
TCAGATCGGTTATTTCATTCACTGCATTGAAAATGACGGTTATATTGTCA
CGAGGATCGTGTTGTATTTGGTAACCACTATTGATACGACTCAATCTTGT
GACCATTTTCCCGATCGCGTCGCTTAATTCTTGATTGCGTTCGAACCGTT
GAGCACGTGACAACTGCTTCAAAAACAAATCTAGATATCGAGTATCAAAG
TCGATTGAGTTGTTATTTGAAGAAAATGGGTTTGTTTTCAAGACTTTACT
GATACTGATGtccattttgaatgaaatttcaaataatattgTCAGCCCAA
TAAATGCAAAACACAAAATAGCAATGAAAACTTTGTACCAAGTCATTCCT
AACATTTTATAATGGTAGTTTTGTTCTCTTTTCCAGTTTCAAATCTCTGA
AAATATACACAAATATTATGTTAAATGGTTTCCTAATATCAGCAGCTTAT
AC Coding sequence (CDS) from alignment at scaffold_493:360853..362954 >TCONS_00069124 ID=TCONS_00069124|Name=TCONS_00069124|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_493:360853..362954 (Clytia hemisphaerica)
TCAGTCATATAAAAAATACTGGCTGGGTTNTCTTGTTAAATCATGGAAAT
CAACCCAGTCAGTCTTGTAAAAAATACTGGCTGGGTGTGatttcattatt
ttgttttggttgttcATGACATATAGAATTTCCGGGTAGACAAGATCATC
AGCACATTTTGTCGTCACTCTAGATGTTAAATAGTCGAGCAGTACATTTC
TATCCATCGCAAAGGGTCCATCAAAATAATCACAACGAACCAATTGGTGT
TTATAACATACATCAAACCCAAACACACTTTTATATTGACTCCAAATAAG
CTTTGATTGGTAGCATCCGGAACTCCACCATCCGTCCGGGTAGATTACCG
ATCCCGAGATAACATCGCATGTCTTCTTTACCAGtggtttcaaaaacttt
ctcatatcaaaattttggtcaaatctaCGGATCCCTTTGGTCAacaaaac
aaactgtgtggagCTTTTTGCCACCAAATCTCTCAAGCTTTGAACTAATG
ATTTTGATGCTAAAATAGTAGTATTGAAATTGGGTAAGATGTGTTGGATG
TCTTTAATCAATGAAGAATGTTTATCTACCATAGACCGAGTTAATCCGAG
TTGGATGCGAGTTGATACTGTCCACTTTGGCTTATTCTTTATATCCTCTA
GCAAAACTTTCAGATCGGTTATTTCATTCACTGCATTGAAAATGACGGTT
ATATTGTCACGAGGATCGTGTTGTATTTGGTAACCACTATTGATACGACT
CAATCTTGTGACCATTTTCCCGATCGCGTCGCTTAATTCTTGATTGCGTT
CGAACCGTTGAGCACGTGACAACTGCTTCAAAAACAAATCTAGATATCGA
GTATCAAAGTCGATTGAGTTGTTATTTGAAGAAAATGGGTTTGTTTTCAA
GACTTTACTGATACTGATGtccattttgaatgaaatttcaaataatattg
TCAGCCCAATAAATGCAAAACACAAAATAGCAATGAAAACTTTGTACCAA
GTCATTCCTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069124-exon-scaffold_493-1491911889:360853..362954 | TCONS_00069124-exon-scaffold_493-1491911889:360853..362954 | Clytia hemisphaerica | exon |
| TCONS_00069124-exon-scaffold_493-1510915933:360853..362954 | TCONS_00069124-exon-scaffold_493-1510915933:360853..362954 | Clytia hemisphaerica | exon |
| TCONS_00069124-exon-scaffold_493-1575043694:360853..362954 | TCONS_00069124-exon-scaffold_493-1575043694:360853..362954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:360853..362954 . |
Blast
The following BLAST results are available for this feature:
|
