TCONS_00069122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069122
Unique NameTCONS_00069122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069122 ID=TCONS_00069122|Name=TCONS_00069122|organism=Clytia hemisphaerica|type=transcript|length=795bp
AGATTATGCAATCAAATATTAAGTAGAGCTTGAATTGAGCACTTCTGATA
ATCTTGGTATAAGAAgacaatgaaaaattttttttttcaaatgtattTGA
CTTTTAAGAATATTGTTATAGATCACAAAAATAGCCTCCAATCTTATTTA
CAAATTTCTAGGGTGTCTTTATATCGAATTTAATTGTGACATCTTCATTA
CTTTATTTGGcactttaaaaaattctaaaacatttttcaaatatttgttt
tttcGTCCTTAAAACCTAATCTGGAAAATTCTTCCTTGTCCATTAGACCT
TGTTCCATCCTACATTTCAAATAGTCTTTCGATTCAGCTGAGCAGTTATA
ACTATTAAGTTCATTCTTGCGTAAACATGCCATATATTTGGTCATAAATG
TTTTACAGTCCCCATCGTGATCAAGTGGAAAGCTTCCTTTTTGTGGTGCA
GTTggtctgaaaactttttgtgaagcaTTCATTTATAAAGTCAAATTTAC
TTTGCTAAATAAAGTTATACATGTATAATTAAAGTTATTGCAAGATTTAA
CGAAAAATTATGATACAGTATTTCAGTGAAAGGGTATTGTGTCTACATAT
AATCTTGTCAAATTTTTTGGactaaaaagaaagaacaaaattTCTGACCT
TTAAAAGTGACAGAAGGGCTCAGAATAATTaaatttccacaaaaaaaatc
aataaattgcATCCTTAAAAAGTTCTACAACTTTCATAGCTGTGTAAACC
CAATTTAtgctaggcttttaggggcggttaaAAACTAGGGGGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_493:257977..258771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069122 ID=TCONS_00069122|Name=TCONS_00069122|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_493:257977..258771 (Clytia hemisphaerica)
CCCCCCCCTAGTTTttaaccgcccctaaaagcctagcaTAAATTGGGTTT
ACACAGCTATGAAAGTTGTAGAACTTTTTAAGGATgcaatttattgattt
tttttgtggaaatttAATTATTCTGAGCCCTTCTGTCACTTTTAAAGGTC
AGAaattttgttctttctttttagtCCAAAAAATTTGACAAGATTATATG
TAGACACAATACCCTTTCACTGAAATACTGTATCATAATTTTTCGTTAAA
TCTTGCAATAACTTTAATTATACATGTATAACTTTATTTAGCAAAGTAAA
TTTGACTTTATAAATGAAtgcttcacaaaaagttttcagaccAACTGCAC
CACAAAAAGGAAGCTTTCCACTTGATCACGATGGGGACTGTAAAACATTT
ATGACCAAATATATGGCATGTTTACGCAAGAATGAACTTAATAGTTATAA
CTGCTCAGCTGAATCGAAAGACTATTTGAAATGTAGGATGGAACAAGGTC
TAATGGACAAGGAAGAATTTTCCAGATTAGGTTTTAAGGACgaaaaaaca
aatatttgaaaaatgttttagaattttttaaagtgCCAAATAAAGTAATG
AAGATGTCACAATTAAATTCGATATAAAGACACCCTAGAAATTTGTAAAT
AAGATTGGAGGCTATTTTTGTGATCTATAACAATATTCTTAAAAGTCAaa
tacatttgaaaaaaaaaatttttcattgtcTTCTTATACCAAGATTATCA
GAAGTGCTCAATTCAAGCTCTACTTAATATTTGATTGCATAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043081XLOC_043081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069122-exon-scaffold_493-1491911889:257977..258771TCONS_00069122-exon-scaffold_493-1491911889:257977..258771Clytia hemisphaericaexon
TCONS_00069122-exon-scaffold_493-1510915933:257977..258771TCONS_00069122-exon-scaffold_493-1510915933:257977..258771Clytia hemisphaericaexon
TCONS_00069122-exon-scaffold_493-1575043694:257977..258771TCONS_00069122-exon-scaffold_493-1575043694:257977..258771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:257977..258771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.8428	58.1526	57.7183	60.8275	29.5553	22.3873	27.9433	28.3463	26.6313	18.9581	25.7617	18.7895	18.6023	24.0438	25.2334	21.6191	31.9505	39.3165	19.436	14.9508	31.0824	30.5788	48.1751	43.4826	28.7307	33.7051	17.8483	17.4535	26.2069	26.9061
Blast
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BLAST of TCONS_00069122 vs. Swiss-Prot (Human)
Match: COX19 (Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens GN=COX19 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.238e-20
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = -2 
Query:  255 MNASQKVFRPTAPQKGSFPLDHDGDCKTFMTKYMACLRKNELNSYNCSAESKDYLKCRMEQGLMDKEEFSRLGFKD 482
            MN   K F+P  P KGSFPLDH G+CK+F  K+M CL  N   +  C  ESK+YL+CRME+ LM +E   +LGF D
Sbjct:    5 MNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQEPLEKLGFGD 80
The following BLAST results are available for this feature:
BLAST of TCONS_00069122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COX191.238e-2052.63Cytochrome c oxidase assembly protein COX19 OS=Hom... [more]
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